Clone Sequence Records
BS17484.3prime Sequence
860 bp (801 high quality bases) assembled on 2007-05-15
> BS17484.3prime
ATGGTCTAGAAAGCTTTTAATCCCCCAATCCAATGCCCAACTCGCTGTTC
GTATCTTCGCTGTTTGCCTGCACAACTCCATAGGAAGGATTCTCGATTAG
CCGGGAACTTTGCTTGTCGCCATTACGACGACGTCGCTGCATTTCCCGGA
GCACCAACAGGGGAATCATTACCAGAGCCAGGCAGAGTAAAATTGCCAGG
ACAAACATGGACCAATGGAATGCCAGGTGTTTGCCAGTGGTCGGACTTAT
TAGGGATTCAAAGCCCGCACAGGTGTCTGGTGCCACGCATTCCTGCCCAG
AAAGGCATCCTTTCGAGCAAATCGGTTCGCATTCGGTGCTGCTGTCGGGC
AAAAATCGGTAACGAGGTAGGCAGGCGCACTTCTCCGGCGCAACGCACTC
GGCATTAATGCACTGCTCCTGGCACTGGGGACGACATGAGTTCGGTTCAC
TGGAGTTGGTAACCACATGGCCGGGATCGCATTCACAGTGTCCCGGAGAG
GAGCATCGCCCATTCTCGCATCTCGGACGGCAGGAGGGTACACACTCGTA
CGGCACCTTGGTGTCTTCGTAGCCAGCGAAGCAGGCACAGCTGTTGGGCT
CTACGCACGTTCCATTCCTGCATCCTGGCTGGCACTCCGGATCACAGATG
GACGTTGATCCCGGCCTCAGCTTGTATCCCTCGTAGCAGCGACACACTCC
CGATCCCAAGCAATGGCTGTTCACGCACTTCTGTGGGCAGTGCGGCTCAC
AGGTCCCAGTGGCCCATCGTTTGATAAAGCCCAGATCACATTGACAGATC
TCTGGGGCGATGCAAAATCCATGAACACATCCCTGGCTGCAGATGGGCTC
GCAGACATTC
BS17484.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18146-PB | 2106 | CG18146-RB | 1263..2106 | 860..17 | 4220 | 100 | Minus |
| CG18146-PA | 1947 | CG18146-RA | 1104..1947 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC2-RC | 2819 | CG18146-RC | 1347..2190 | 860..17 | 4220 | 100 | Minus |
| NimC2-RA | 2343 | CG18146-RA | 1188..2031 | 860..17 | 4220 | 100 | Minus |
| NimC2-RB | 2502 | CG18146-RB | 1347..2190 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:27:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13981797..13982640 | 860..17 | 4220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:27:59 has no hits.
BS17484.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:10 Download gff for
BS17484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18146-PA | 1104..1947 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:30 Download gff for
BS17484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC2-RB | 1347..2198 | 10..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:23:43 Download gff for
BS17484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC2-RB | 1347..2198 | 10..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:23:43 Download gff for
BS17484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13981797..13982648 | 10..860 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:30 Download gff for
BS17484.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13981797..13982648 | 10..860 | 99 | | Minus |
BS17484.complete Sequence
1979 bp assembled on 2010-07-01
GenBank Submission: KX802131
> BS17484.complete
GAAGTTATCAGTCGACATGCTTCTTCTCTTCTTGGTTTTACTGAGCGGCC
TTCAGGTGCAGGGCTGTGTCAAACAAGCTCACGAGTGTGTGCCGCTGTGC
AATGATTGTGGAGCCTCGGGAAAATGCCTTTTGCCCAATGTGTGTTTGTG
TGGAAAGGGTTATGTAAGTCGTAAGGATCACGGTCACTGTGAGCCGGAGT
GCAGTGAGTCCTGCGTGAACGGAAAATGTGTGGCACCGGATGAGTGTGAA
TGCCTTGCTGGCCATCGTTTCGTGAATGGCTCTCAAACGGCATGTGAGCC
AATTTGTGTGGAGGACTGTGCCAATGGTCGTTGTCTGGAGACGGGAAAAT
GCCTGTGCAACAATGGCTATCAGCGGGATGAAAAGCTTAAGAAATGTGTG
CCCATCTGCCAGGATGCCTGCTATCATGGCGACTGTGTGGCGCCCAACGA
GTGTCGCTGTCATCCCGGTCATGAGCAGCGCTTGGGAGTGCCGTGGATTT
GCGATCCGATCTGCTCGAGCGGCTGCGCCAATGGCTATTGCCAGGGTGCC
GAGGTGTGCGCCTGCAAGATGGGCTATGCCCACAAGGATAACACCCTTGC
CTCAGGCTGTGAGCCTGTGTGCAATCCACCCTGCACGAATGGCACTTGCA
TCTCACCCGGCCACTGCGCCTGCTCCGAAGGTCACGTATTTGCCGAGGGA
TCGCGTCACGAGTGTGTTCCCAGCTGCCGTTCCGGTTGCGAGAATGGATA
TTGTAGTTCTCCTGGCCGCTGTGAGTGCCACGAGGGATTCGAGAAGACAT
CGCCGCACCGCTGTTCACCCACATGCCGACCGGGCTGTGGCCAGAACTCC
CGCTGCGCCGCTCCAGACACCTGTGCCTGCGATGTCGGCTACGTCTTTGT
CAACGGCAGCACCACCGAATGCGAGCCCTTCTGTCCCAGGAACTGCCGGA
ATGGAATCTGCAGTAGTCCAGGTGTCTGCACATGCTTGGAAGGTTTTCAG
GCCCTTCTCTCGTTCTACTGCATACCAGTTTGCTCGAAAACCTGCATTCA
TGGCAGTTGTGTGGCGCCCAACGAGTGTCGCTGCTTCACCGGCTACCGAC
CAAATCCCAGTCTGGGAGCGAATGTCTGCGAGCCCATCTGCAGCCAGGGA
TGTGTTCATGGATTTTGCATCGCCCCAGAGATCTGTCAATGTGATCTGGG
CTTTATCAAACGATGGGCCACTGGGACCTGTGAGCCGCACTGCCCACAGA
AGTGCGTGAACAGCCATTGCTTGGGATCGGGAGTGTGTCGCTGCTACGAG
GGATACAAGCTGAGGCCGGGATCAACGTCCATCTGTGATCCGGAGTGCCA
GCCAGGATGCAGGAATGGAACGTGCGTAGAGCCCAACAGCTGTGCCTGCT
TCGCTGGCTACGAAGACACCAAGGTGCCGTACGAGTGTGTACCCTCCTGC
CGTCCGAGATGCGAGAATGGGCGATGCTCCTCTCCGGGACACTGTGAATG
CGATCCCGGCCATGTGGTTACCAACTCCAGTGAACCGAACTCATGTCGTC
CCCAGTGCCAGGAGCAGTGCATTAATGCCGAGTGCGTTGCGCCGGAGAAG
TGCGCCTGCCTACCTCGTTACCGATTTTTGCCCGACAGCAGCACCGAATG
CGAACCGATTTGCTCGAAAGGATGCCTTTCTGGGCAGGAATGCGTGGCAC
CAGACACCTGTGCGGGCTTTGAATCCCTAATAAGTCCGACCACTGGCAAA
CACCTGGCATTCCATTGGTCCATGTTTGTCCTGGCAATTTTACTCTGCCT
GGCTCTGGTAATGATTCCCCTGTTGGTGCTCCGGGAAATGCAGCGACGTC
GTCGTAATGGCGACAAGCAAAGTTCCCGGCTAATCGAGAATCCTTCCTAT
GGAGTTGTGCAGGCAAACAGCGAAGATACGAACAGCGAGTTGGGCATTGG
ATTGGGGGATTAAAAGCTTTCTAGACCAT
BS17484.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC2-RA | 1947 | CG18146-PA | 1..1947 | 17..1963 | 9735 | 100 | Plus |
| NimC2-RC | 2106 | CG18146-PC | 224..2106 | 81..1963 | 9415 | 100 | Plus |
| NimC2-RB | 2106 | CG18146-PB | 224..2106 | 81..1963 | 9415 | 100 | Plus |
| NimC2-RC | 2106 | CG18146-PC | 1..65 | 17..81 | 325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC2-RA | 2343 | CG18146-RA | 85..2031 | 17..1963 | 9735 | 100 | Plus |
| NimC2-RC | 2819 | CG18146-RC | 308..2190 | 81..1963 | 9415 | 100 | Plus |
| NimC2-RB | 2502 | CG18146-RB | 308..2190 | 81..1963 | 9415 | 100 | Plus |
| NimC2-RC | 2819 | CG18146-RC | 85..149 | 17..81 | 325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13981675..13982640 | 998..1963 | 4830 | 100 | Plus |
| 2L | 23513712 | 2L | 13980616..13981535 | 82..1001 | 4600 | 100 | Plus |
| 2L | 23513712 | 2L | 13980210..13980274 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:59:38 has no hits.
BS17484.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-01 09:34:38 Download gff for
BS17484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimC2-RA | 51..1995 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:28:11 Download gff for
BS17484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC2-RA | 85..2029 | 17..1961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:53 Download gff for
BS17484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC2-RA | 85..2029 | 17..1961 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:53 Download gff for
BS17484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13980210..13980274 | 17..81 | 100 | -> | Plus |
| 2L | 13980616..13981534 | 82..1000 | 100 | -> | Plus |
| 2L | 13981678..13982638 | 1001..1961 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:28:11 Download gff for
BS17484.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13980210..13980274 | 17..81 | 100 | -> | Plus |
| arm_2L | 13980616..13981534 | 82..1000 | 100 | -> | Plus |
| arm_2L | 13981678..13982638 | 1001..1961 | 100 | | Plus |
BS17484.pep Sequence
Translation from 16 to 1962
> BS17484.pep
MLLLFLVLLSGLQVQGCVKQAHECVPLCNDCGASGKCLLPNVCLCGKGYV
SRKDHGHCEPECSESCVNGKCVAPDECECLAGHRFVNGSQTACEPICVED
CANGRCLETGKCLCNNGYQRDEKLKKCVPICQDACYHGDCVAPNECRCHP
GHEQRLGVPWICDPICSSGCANGYCQGAEVCACKMGYAHKDNTLASGCEP
VCNPPCTNGTCISPGHCACSEGHVFAEGSRHECVPSCRSGCENGYCSSPG
RCECHEGFEKTSPHRCSPTCRPGCGQNSRCAAPDTCACDVGYVFVNGSTT
ECEPFCPRNCRNGICSSPGVCTCLEGFQALLSFYCIPVCSKTCIHGSCVA
PNECRCFTGYRPNPSLGANVCEPICSQGCVHGFCIAPEICQCDLGFIKRW
ATGTCEPHCPQKCVNSHCLGSGVCRCYEGYKLRPGSTSICDPECQPGCRN
GTCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGRCSSPGHCECDPGHV
VTNSSEPNSCRPQCQEQCINAECVAPEKCACLPRYRFLPDSSTECEPICS
KGCLSGQECVAPDTCAGFESLISPTTGKHLAFHWSMFVLAILLCLALVMI
PLLVLREMQRRRRNGDKQSSRLIENPSYGVVQANSEDTNSELGIGLGD*
BS17484.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC2-PA | 648 | CG18146-PA | 1..648 | 1..648 | 3785 | 100 | Plus |
| NimC2-PC | 701 | CG18146-PC | 1..701 | 1..648 | 3714 | 92.3 | Plus |
| NimC2-PB | 701 | CG18146-PB | 1..701 | 1..648 | 3714 | 92.3 | Plus |
| eater-PC | 1074 | CG6124-PC | 286..809 | 16..566 | 1248 | 41 | Plus |
| eater-PC | 1074 | CG6124-PC | 119..677 | 19..566 | 1200 | 38.9 | Plus |
| eater-PC | 1074 | CG6124-PC | 192..710 | 20..566 | 1195 | 39.3 | Plus |
| eater-PC | 1074 | CG6124-PC | 88..611 | 21..566 | 1180 | 39.5 | Plus |
| eater-PC | 1074 | CG6124-PC | 424..1055 | 22..617 | 1158 | 35.7 | Plus |
| eater-PC | 1074 | CG6124-PC | 41..545 | 45..566 | 1047 | 37.6 | Plus |
| NimC1-PC | 622 | CG8942-PC | 39..523 | 118..559 | 719 | 33.5 | Plus |
| eater-PC | 1074 | CG6124-PC | 31..380 | 209..566 | 683 | 36 | Plus |
