Clone BS17501 Report

Search the DGRC for BS17501

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptCG13856-RA
Protein status:BS17501.pep: full length peptide match
Sequenced Size:602

Clone Sequence Records

BS17501.complete Sequence

602 bp assembled on 2010-02-09

GenBank Submission: KX804643

> BS17501.complete
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATTAGAAGCTTTCTAGACC
AT

BS17501.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 570 CG13856-PA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 943 CG13856-RA 331..900 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22404447..22405016 17..586 2850 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:12:52 has no hits.

BS17501.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:12 Download gff for BS17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:39 Download gff for BS17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..900 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:18 Download gff for BS17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..900 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:12 Download gff for BS17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..909 17..597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:19 Download gff for BS17501.complete
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..900 17..586 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:19 Download gff for BS17501.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22404447..22405016 17..586 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:18 Download gff for BS17501.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18230169..18230738 17..586 100   Plus

BS17501.3prime Sequence

600 bp (600 high quality bases) assembled on 2007-05-15

> BS17501.3prime
ATGGTCTAGAAAGCTTCTAATAAATAATGTTTTTGTTATAATAAAAGTTG
GACTTCAGGTTAAGGGCCGTCAGACCGGACTTTTTATCAGCATGGGCAAC
CTGCAGTCGATGTGGGCGCCCATTGAAGTAGTAATCCTTGAGGTGTTGCA
CTCGAAGTACTTTGCTCGGATTCCGATGATCCAGATTGGGGCTAGATGTC
GTCGTCGTCGGTGGGCGAACCGTTGTGGTCTTTCTCGTTGTGCTCTCCGA
CTCGTGAAGGATGGGATTGATTTTCATCGGCTGATAATCCAAGCCGATGC
CAGGTATGTGGCGGAAGGGCAGTGGGGGTACGGGTATGTAATATATTTTC
GAATCCTTTTTCGTTTTTTTCGTCTTACTGCCGTTCTTGTTGTACTTGCG
CAGATTCAGCGGCTTCGATGTGACCACGTAGTCCATATACAAGTTGTCCA
GCGAGGGTGACTGCACCACAATCCGGTTGGCCAATCTCGTGGGAGGCGCT
TCTGCCCGTGGACCATAGGAATAGGGTCGAGATGCCACCAAATTGGCCAA
GATGATTAGCGATGCCAGTGGAAGCAACGGCGACATGTCGACTGATAACT

BS17501.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 570 CG13856-RA 1..570 586..17 2850 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 943 CG13856-RA 331..900 586..17 2850 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22404447..22405016 586..17 2850 100 Minus
Blast to na_te.dros performed on 2015-02-04 20:54:26 has no hits.

BS17501.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:21 Download gff for BS17501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-PA 1..570 17..586 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:30 Download gff for BS17501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..909 6..586 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:38 Download gff for BS17501.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..909 6..586 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:38 Download gff for BS17501.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22404442..22405025 6..595 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:30 Download gff for BS17501.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18230164..18230747 6..595 98   Minus

BS17501.5prime Sequence

600 bp (600 high quality bases) assembled on 2007-05-15

> BS17501.5prime
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATTAGAAGCTTTCTAGACC

BS17501.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 570 CG13856-RA 1..570 17..586 2850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-RA 943 CG13856-RA 331..900 17..586 2850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22404447..22405016 17..586 2850 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:26:25 has no hits.

BS17501.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:28 Download gff for BS17501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-PA 1..570 17..586 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:37 Download gff for BS17501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..909 17..597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:16 Download gff for BS17501.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13856-RA 331..909 17..597 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:16 Download gff for BS17501.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22404442..22405025 8..597 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:37 Download gff for BS17501.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18230164..18230747 8..597 98   Plus

BS17501.pep Sequence

Translation from 16 to 585

> BS17501.pep
MSPLLPLASLIILANLVASRPYSYGPRAEAPPTRLANRIVVQSPSLDNLY
MDYVVTSKPLNLRKYNKNGSKTKKTKKDSKIYYIPVPPLPFRHIPGIGLD
YQPMKINPILHESESTTRKTTTVRPPTTTTSSPNLDHRNPSKVLRVQHLK
DYYFNGRPHRLQVAHADKKSGLTALNLKSNFYYNKNIIY*

BS17501.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG13856-PA 189 CG13856-PA 1..189 1..189 992 100 Plus