Clone Sequence Records
BS17501.complete Sequence
602 bp assembled on 2010-02-09
GenBank Submission: KX804643
> BS17501.complete
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATTAGAAGCTTTCTAGACC
AT
BS17501.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 570 | CG13856-PA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 943 | CG13856-RA | 331..900 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22404447..22405016 | 17..586 | 2850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:12:52 has no hits.
BS17501.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:12 Download gff for
BS17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:39 Download gff for
BS17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..900 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:18 Download gff for
BS17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..900 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:12 Download gff for
BS17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..909 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:19 Download gff for
BS17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..900 | 17..586 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:19 Download gff for
BS17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22404447..22405016 | 17..586 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:18 Download gff for
BS17501.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18230169..18230738 | 17..586 | 100 | | Plus |
BS17501.3prime Sequence
600 bp (600 high quality bases) assembled on 2007-05-15
> BS17501.3prime
ATGGTCTAGAAAGCTTCTAATAAATAATGTTTTTGTTATAATAAAAGTTG
GACTTCAGGTTAAGGGCCGTCAGACCGGACTTTTTATCAGCATGGGCAAC
CTGCAGTCGATGTGGGCGCCCATTGAAGTAGTAATCCTTGAGGTGTTGCA
CTCGAAGTACTTTGCTCGGATTCCGATGATCCAGATTGGGGCTAGATGTC
GTCGTCGTCGGTGGGCGAACCGTTGTGGTCTTTCTCGTTGTGCTCTCCGA
CTCGTGAAGGATGGGATTGATTTTCATCGGCTGATAATCCAAGCCGATGC
CAGGTATGTGGCGGAAGGGCAGTGGGGGTACGGGTATGTAATATATTTTC
GAATCCTTTTTCGTTTTTTTCGTCTTACTGCCGTTCTTGTTGTACTTGCG
CAGATTCAGCGGCTTCGATGTGACCACGTAGTCCATATACAAGTTGTCCA
GCGAGGGTGACTGCACCACAATCCGGTTGGCCAATCTCGTGGGAGGCGCT
TCTGCCCGTGGACCATAGGAATAGGGTCGAGATGCCACCAAATTGGCCAA
GATGATTAGCGATGCCAGTGGAAGCAACGGCGACATGTCGACTGATAACT
BS17501.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-PA | 570 | CG13856-RA | 1..570 | 586..17 | 2850 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:54:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 943 | CG13856-RA | 331..900 | 586..17 | 2850 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22404447..22405016 | 586..17 | 2850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:54:26 has no hits.
BS17501.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:21 Download gff for
BS17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-PA | 1..570 | 17..586 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:30 Download gff for
BS17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..909 | 6..586 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:38 Download gff for
BS17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..909 | 6..586 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:38 Download gff for
BS17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22404442..22405025 | 6..595 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:30 Download gff for
BS17501.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18230164..18230747 | 6..595 | 98 | | Minus |
BS17501.5prime Sequence
600 bp (600 high quality bases) assembled on 2007-05-15
> BS17501.5prime
GAAGTTATCAGTCGACATGTCGCCGTTGCTTCCACTGGCATCGCTAATCA
TCTTGGCCAATTTGGTGGCATCTCGACCCTATTCCTATGGTCCACGGGCA
GAAGCGCCTCCCACGAGATTGGCCAACCGGATTGTGGTGCAGTCACCCTC
GCTGGACAACTTGTATATGGACTACGTGGTCACATCGAAGCCGCTGAATC
TGCGCAAGTACAACAAGAACGGCAGTAAGACGAAAAAAACGAAAAAGGAT
TCGAAAATATATTACATACCCGTACCCCCACTGCCCTTCCGCCACATACC
TGGCATCGGCTTGGATTATCAGCCGATGAAAATCAATCCCATCCTTCACG
AGTCGGAGAGCACAACGAGAAAGACCACAACGGTTCGCCCACCGACGACG
ACGACATCTAGCCCCAATCTGGATCATCGGAATCCGAGCAAAGTACTTCG
AGTGCAACACCTCAAGGATTACTACTTCAATGGGCGCCCACATCGACTGC
AGGTTGCCCATGCTGATAAAAAGTCCGGTCTGACGGCCCTTAACCTGAAG
TCCAACTTTTATTATAACAAAAACATTATTTATTAGAAGCTTTCTAGACC
BS17501.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-PA | 570 | CG13856-RA | 1..570 | 17..586 | 2850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-RA | 943 | CG13856-RA | 331..900 | 17..586 | 2850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22404447..22405016 | 17..586 | 2850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:26:25 has no hits.
BS17501.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:28 Download gff for
BS17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-PA | 1..570 | 17..586 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:37 Download gff for
BS17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..909 | 17..597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:46:16 Download gff for
BS17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13856-RA | 331..909 | 17..597 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:46:16 Download gff for
BS17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22404442..22405025 | 8..597 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:37 Download gff for
BS17501.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18230164..18230747 | 8..597 | 98 | | Plus |
BS17501.pep Sequence
Translation from 16 to 585
> BS17501.pep
MSPLLPLASLIILANLVASRPYSYGPRAEAPPTRLANRIVVQSPSLDNLY
MDYVVTSKPLNLRKYNKNGSKTKKTKKDSKIYYIPVPPLPFRHIPGIGLD
YQPMKINPILHESESTTRKTTTVRPPTTTTSSPNLDHRNPSKVLRVQHLK
DYYFNGRPHRLQVAHADKKSGLTALNLKSNFYYNKNIIY*
BS17501.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13856-PA | 189 | CG13856-PA | 1..189 | 1..189 | 992 | 100 | Plus |