Clone BS17502 Report

Search the DGRC for BS17502

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:2
Vector:pDNR-Dual
Associated Gene/Transcriptms(3)K81-RA
Protein status:BS17502.pep: full length peptide match
Sequenced Size:587

Clone Sequence Records

BS17502.complete Sequence

587 bp assembled on 2010-02-09

GenBank Submission: KX804614

> BS17502.complete
GAAGTTATCAGTCGACATGTCGGATTCGCCCCATGAGGAGCACCGCTTGT
GCGGTCTGGGGAATCACACGCTGAGGTCCCCGTACCGCGTAATCAGAAAT
CCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTCGGAGCTGCGGTCTCA
GCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCGGCTGA
AGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCT
ATTCTCTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGT
GTCCACAACACAATCCTCGGAGGAGCAAGAATCAACCACTAGCGCAGCGC
CGGCGGCGGCGGCTCAAAGAGCAGGAAGCCAGTTGGTTGAGTCCAATTCT
TCCGACGATACACTTTTCTCCGATGACTACGATCCCAGCTCGAATCTGAG
TTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACCAATTCCGA
AAAGGCGCCAGTTTGTGCATCTAAATCGTGAAGCTATGGCCATTTATCTG
GCGGGAACTACTGGGGGATAAAAGCTTTCTAGACCAT

BS17502.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
ms(3)K81-RA 555 CG14251-PA 1..555 17..571 2775 100 Plus
HipHop-RB 666 CG6874-PB 519..607 421..509 205 82 Plus
HipHop-RA 666 CG6874-PA 519..607 421..509 205 82 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
ms(3)K81-RA 711 CG14251-RA 105..659 17..571 2775 100 Plus
HipHop-RB 1183 CG6874-RB 655..743 421..509 205 82 Plus
HipHop-RA 1124 CG6874-RA 596..684 421..509 205 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26875956..26876510 17..571 2775 100 Plus
3L 28110227 3L 18821825..18821913 421..509 205 82 Plus
Blast to na_te.dros performed on 2014-11-28 03:11:24 has no hits.

BS17502.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:30 Download gff for BS17502.complete
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:19 Download gff for BS17502.complete
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 1..553 17..569 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:41 Download gff for BS17502.complete
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 105..657 17..569 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:30 Download gff for BS17502.complete
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:52 Download gff for BS17502.complete
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 105..657 17..569 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:52 Download gff for BS17502.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26875956..26876508 17..569 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:41 Download gff for BS17502.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22701678..22702230 17..569 100   Plus

BS17502.3prime Sequence

585 bp (585 high quality bases) assembled on 2007-05-15

> BS17502.3prime
ATGGTCTAGAAAGCTTTTATCCCCCAGTAGTTCCCGCCAGATAAATGGCC
ATAGCTTCACGATTTAGATGCACAAACTGGCGCCTTTTCGGAATTGGTTG
GACATTCGGTAGCCGCGTTCCATTCACGGCATTCAAACTCAGATTCGAGC
TGGGATCGTAGTCATCGGAGAAAAGTGTATCGTCGGAAGAATTGGACTCA
ACCAACTGGCTTCCTGCTCTTTGAGCCGCCGCCGCCGGCGCTGCGCTAGT
GGTTGATTCTTGCTCCTCCGAGGATTGTGTTGTGGACACACTAGCCGCGG
ACTCATGAGATTTCTCACTACTGCTCCTCGAGAGAATAGCACTGGCTGCC
TGTCTATTTGCCAGGTGTCTCTTCGCATTGTTGTTCTTCAGCCGGTAGAG
CTGGATCAGTTGCGTGTAGCACGAGAGGCACAGTGGCTGAGACCGCAGCT
CCGAGTTTATCAGCTGGCCAAACTTCAGCAGGTGCGGATTTCTGATTACG
CGGTACGGGGACCTCAGCGTGTGATTCCCCAGACCGCACAAGCGGTGCTC
CTCATGGGGCGAATCCGACATGTCGACTGATAACT

BS17502.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14251-PA 555 ms(3)K81-RA 1..555 571..17 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
ms(3)K81-RA 711 CG14251-RA 105..659 571..17 2775 100 Minus
HipHop-RB 1183 CG6874-RB 655..743 167..79 205 82 Minus
HipHop-RA 1124 CG6874-RA 596..684 167..79 205 82 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26875956..26876510 571..17 2775 100 Minus
3L 28110227 3L 18821825..18821913 167..79 205 82 Minus
Blast to na_te.dros performed on 2015-02-13 11:54:57 has no hits.

BS17502.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:30 Download gff for BS17502.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14251-PA 1..555 17..571 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:50 Download gff for BS17502.3prime
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 95..664 10..583 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:30 Download gff for BS17502.3prime
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 95..664 10..583 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:30 Download gff for BS17502.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26875946..26876515 10..583 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:50 Download gff for BS17502.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22701668..22702237 10..583 98   Minus

BS17502.5prime Sequence

585 bp (585 high quality bases) assembled on 2007-05-15

> BS17502.5prime
GAAGTTATCAGTCGACATGTCGGATTCGCCCCATGAGGAGCACCGCTTGT
GCGGTCTGGGGAATCACACGCTGAGGTCCCCGTACCGCGTAATCAGAAAT
CCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTCGGAGCTGCGGTCTCA
GCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCGGCTGA
AGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCT
ATTCTCTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGT
GTCCACAACACAATCCTCGGAGGAGCAAGAATCAACCACTAGCGCAGCGC
CGGCGGCGGCGGCTCAAAGAGCAGGAAGCCAGTTGGTTGAGTCCAATTCT
TCCGACGATACACTTTTCTCCGATGACTACGATCCCAGCTCGAATCTGAG
TTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACCAATTCCGA
AAAGGCGCCAGTTTGTGCATCTAAATCGTGAAGCTATGGCCATTTATCTG
GCGGGAACTACTGGGGGATAAAAGCTTTCTAGACC

BS17502.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG14251-PA 555 ms(3)K81-RA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
ms(3)K81-RA 711 CG14251-RA 105..659 17..571 2775 100 Plus
HipHop-RB 1183 CG6874-RB 655..743 421..509 205 82 Plus
HipHop-RA 1124 CG6874-RA 596..684 421..509 205 82 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26875956..26876510 17..571 2775 100 Plus
3L 28110227 3L 18821825..18821913 421..509 205 82 Plus
Blast to na_te.dros performed on 2015-02-10 17:38:38 has no hits.

BS17502.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:37 Download gff for BS17502.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14251-PA 1..555 17..571 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:26 Download gff for BS17502.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 95..664 5..578 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:49 Download gff for BS17502.5prime
Subject Subject Range Query Range Percent Splice Strand
ms(3)K81-RA 95..664 5..578 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:49 Download gff for BS17502.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26875946..26876515 5..578 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:26 Download gff for BS17502.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22701668..22702237 5..578 98   Plus

BS17502.pep Sequence

Translation from 16 to 570

> BS17502.pep
MSDSPHEEHRLCGLGNHTLRSPYRVIRNPHLLKFGQLINSELRSQPLCLS
CYTQLIQLYRLKNNNAKRHLANRQAASAILSRSSSEKSHESAASVSTTQS
SEEQESTTSAAPAAAAQRAGSQLVESNSSDDTLFSDDYDPSSNLSLNAVN
GTRLPNVQPIPKRRQFVHLNREAMAIYLAGTTGG*

BS17502.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
ms(3)K81-PA 184 CG14251-PA 1..184 1..184 933 100 Plus
HipHop-PB 221 CG6874-PB 11..221 8..184 396 45.8 Plus
HipHop-PA 221 CG6874-PA 11..221 8..184 396 45.8 Plus