Clone Sequence Records
BS17502.complete Sequence
587 bp assembled on 2010-02-09
GenBank Submission: KX804614
> BS17502.complete
GAAGTTATCAGTCGACATGTCGGATTCGCCCCATGAGGAGCACCGCTTGT
GCGGTCTGGGGAATCACACGCTGAGGTCCCCGTACCGCGTAATCAGAAAT
CCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTCGGAGCTGCGGTCTCA
GCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCGGCTGA
AGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCT
ATTCTCTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGT
GTCCACAACACAATCCTCGGAGGAGCAAGAATCAACCACTAGCGCAGCGC
CGGCGGCGGCGGCTCAAAGAGCAGGAAGCCAGTTGGTTGAGTCCAATTCT
TCCGACGATACACTTTTCTCCGATGACTACGATCCCAGCTCGAATCTGAG
TTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACCAATTCCGA
AAAGGCGCCAGTTTGTGCATCTAAATCGTGAAGCTATGGCCATTTATCTG
GCGGGAACTACTGGGGGATAAAAGCTTTCTAGACCAT
BS17502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(3)K81-RA | 555 | CG14251-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
HipHop-RB | 666 | CG6874-PB | 519..607 | 421..509 | 205 | 82 | Plus |
HipHop-RA | 666 | CG6874-PA | 519..607 | 421..509 | 205 | 82 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(3)K81-RA | 711 | CG14251-RA | 105..659 | 17..571 | 2775 | 100 | Plus |
HipHop-RB | 1183 | CG6874-RB | 655..743 | 421..509 | 205 | 82 | Plus |
HipHop-RA | 1124 | CG6874-RA | 596..684 | 421..509 | 205 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26875956..26876510 | 17..571 | 2775 | 100 | Plus |
3L | 28110227 | 3L | 18821825..18821913 | 421..509 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:11:24 has no hits.
BS17502.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:30 Download gff for
BS17502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:19 Download gff for
BS17502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 1..553 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:41 Download gff for
BS17502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 105..657 | 17..569 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:30 Download gff for
BS17502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:52 Download gff for
BS17502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 105..657 | 17..569 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:52 Download gff for
BS17502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26875956..26876508 | 17..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:41 Download gff for
BS17502.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22701678..22702230 | 17..569 | 100 | | Plus |
BS17502.3prime Sequence
585 bp (585 high quality bases) assembled on 2007-05-15
> BS17502.3prime
ATGGTCTAGAAAGCTTTTATCCCCCAGTAGTTCCCGCCAGATAAATGGCC
ATAGCTTCACGATTTAGATGCACAAACTGGCGCCTTTTCGGAATTGGTTG
GACATTCGGTAGCCGCGTTCCATTCACGGCATTCAAACTCAGATTCGAGC
TGGGATCGTAGTCATCGGAGAAAAGTGTATCGTCGGAAGAATTGGACTCA
ACCAACTGGCTTCCTGCTCTTTGAGCCGCCGCCGCCGGCGCTGCGCTAGT
GGTTGATTCTTGCTCCTCCGAGGATTGTGTTGTGGACACACTAGCCGCGG
ACTCATGAGATTTCTCACTACTGCTCCTCGAGAGAATAGCACTGGCTGCC
TGTCTATTTGCCAGGTGTCTCTTCGCATTGTTGTTCTTCAGCCGGTAGAG
CTGGATCAGTTGCGTGTAGCACGAGAGGCACAGTGGCTGAGACCGCAGCT
CCGAGTTTATCAGCTGGCCAAACTTCAGCAGGTGCGGATTTCTGATTACG
CGGTACGGGGACCTCAGCGTGTGATTCCCCAGACCGCACAAGCGGTGCTC
CTCATGGGGCGAATCCGACATGTCGACTGATAACT
BS17502.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14251-PA | 555 | ms(3)K81-RA | 1..555 | 571..17 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(3)K81-RA | 711 | CG14251-RA | 105..659 | 571..17 | 2775 | 100 | Minus |
HipHop-RB | 1183 | CG6874-RB | 655..743 | 167..79 | 205 | 82 | Minus |
HipHop-RA | 1124 | CG6874-RA | 596..684 | 167..79 | 205 | 82 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26875956..26876510 | 571..17 | 2775 | 100 | Minus |
3L | 28110227 | 3L | 18821825..18821913 | 167..79 | 205 | 82 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:54:57 has no hits.
BS17502.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:30 Download gff for
BS17502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14251-PA | 1..555 | 17..571 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:50 Download gff for
BS17502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 95..664 | 10..583 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:30 Download gff for
BS17502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 95..664 | 10..583 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:30 Download gff for
BS17502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26875946..26876515 | 10..583 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:50 Download gff for
BS17502.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22701668..22702237 | 10..583 | 98 | | Minus |
BS17502.5prime Sequence
585 bp (585 high quality bases) assembled on 2007-05-15
> BS17502.5prime
GAAGTTATCAGTCGACATGTCGGATTCGCCCCATGAGGAGCACCGCTTGT
GCGGTCTGGGGAATCACACGCTGAGGTCCCCGTACCGCGTAATCAGAAAT
CCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTCGGAGCTGCGGTCTCA
GCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCGGCTGA
AGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCT
ATTCTCTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGT
GTCCACAACACAATCCTCGGAGGAGCAAGAATCAACCACTAGCGCAGCGC
CGGCGGCGGCGGCTCAAAGAGCAGGAAGCCAGTTGGTTGAGTCCAATTCT
TCCGACGATACACTTTTCTCCGATGACTACGATCCCAGCTCGAATCTGAG
TTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACCAATTCCGA
AAAGGCGCCAGTTTGTGCATCTAAATCGTGAAGCTATGGCCATTTATCTG
GCGGGAACTACTGGGGGATAAAAGCTTTCTAGACC
BS17502.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14251-PA | 555 | ms(3)K81-RA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(3)K81-RA | 711 | CG14251-RA | 105..659 | 17..571 | 2775 | 100 | Plus |
HipHop-RB | 1183 | CG6874-RB | 655..743 | 421..509 | 205 | 82 | Plus |
HipHop-RA | 1124 | CG6874-RA | 596..684 | 421..509 | 205 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26875956..26876510 | 17..571 | 2775 | 100 | Plus |
3L | 28110227 | 3L | 18821825..18821913 | 421..509 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:38:38 has no hits.
BS17502.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:37 Download gff for
BS17502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14251-PA | 1..555 | 17..571 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:26 Download gff for
BS17502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 95..664 | 5..578 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:36:49 Download gff for
BS17502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ms(3)K81-RA | 95..664 | 5..578 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:36:49 Download gff for
BS17502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26875946..26876515 | 5..578 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:26 Download gff for
BS17502.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22701668..22702237 | 5..578 | 98 | | Plus |
BS17502.pep Sequence
Translation from 16 to 570
> BS17502.pep
MSDSPHEEHRLCGLGNHTLRSPYRVIRNPHLLKFGQLINSELRSQPLCLS
CYTQLIQLYRLKNNNAKRHLANRQAASAILSRSSSEKSHESAASVSTTQS
SEEQESTTSAAPAAAAQRAGSQLVESNSSDDTLFSDDYDPSSNLSLNAVN
GTRLPNVQPIPKRRQFVHLNREAMAIYLAGTTGG*
BS17502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ms(3)K81-PA | 184 | CG14251-PA | 1..184 | 1..184 | 933 | 100 | Plus |
HipHop-PB | 221 | CG6874-PB | 11..221 | 8..184 | 396 | 45.8 | Plus |
HipHop-PA | 221 | CG6874-PA | 11..221 | 8..184 | 396 | 45.8 | Plus |