Clone Sequence Records
BS17504.complete Sequence
548 bp assembled on 2010-02-09
GenBank Submission: KX801108
> BS17504.complete
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACTAGAAGCTTTCTAGACCAT
BS17504.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 516 | CG11110-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 752 | CG11110-RA | 95..612 | 16..533 | 2590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20641995..20642418 | 110..533 | 2120 | 100 | Plus |
2R | 25286936 | 2R | 20641836..20641931 | 16..111 | 480 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 03:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1860..1910 | 495..544 | 108 | 70.6 | Plus |
BS17504.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:18 Download gff for
BS17504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:07 Download gff for
BS17504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 36..551 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:21 Download gff for
BS17504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 96..611 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:18 Download gff for
BS17504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 27..551 | 3..532 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:34 Download gff for
BS17504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 96..611 | 17..532 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:34 Download gff for
BS17504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20641837..20641930 | 17..110 | 100 | -> | Plus |
2R | 20641996..20642417 | 111..532 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:21 Download gff for
BS17504.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16529342..16529435 | 17..110 | 100 | -> | Plus |
arm_2R | 16529501..16529922 | 111..532 | 100 | | Plus |
BS17504.3prime Sequence
546 bp (546 high quality bases) assembled on 2007-05-15
> BS17504.3prime
ATGGTCTAGAAAGCTTCTAGTTGTAGTAGTTGCTGGAGTTCTTGGAGGCC
TGTATGGGTCTCCGTCGCCGCGGCAGTTCGTTCTCCAGTATTCGCCAGCG
TTCCGGTGGCCACACGATGGCCACTGCCCGCGCGGACATCAGGCCCAGGG
CGACGGGTCCAAAGGTATTGCTGTCCATGGAGTGGCCTGTGTGATCGCCC
TCCACCCAACAATGTCCTTCGGGTACGCGAACGATCTCGTGCTTGTAGCC
CAGCGTGGACACGACGTCGCCCTGCAGCCCCACCACGCGCTTGATAATCT
TCTGGGCGGGATCCTTGGGTGAAATGAGCGATATTATGTCGCCGCGCTCC
ACCTGACTGTTGTGGGTGCCCCAGCGCAGCAGGAACACATAGTCCTTTTC
ATCCGGCACGGGATTGAGAGCGGGCTGCATGGAGATGCCATCCACCCTGG
CCACATAACCAACGCAGTCCAGGAAAGTGACGCCAAGTGGCAGAGCGTAC
AGCAAGGACTTGCCAAAGAACCGAAATGCCATGTCGACTGATAACT
BS17504.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-PA | 516 | CG11110-RA | 1..516 | 532..17 | 2580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 752 | CG11110-RA | 95..612 | 533..16 | 2590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20641995..20642418 | 439..16 | 2120 | 100 | Minus |
2R | 25286936 | 2R | 20641836..20641931 | 533..438 | 480 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 10:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1860..1910 | 54..5 | 108 | 70.6 | Minus |
BS17504.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:41 Download gff for
BS17504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-PA | 1..516 | 17..532 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:00 Download gff for
BS17504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..614 | 12..546 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:33 Download gff for
BS17504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..614 | 12..546 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:33 Download gff for
BS17504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20641828..20641930 | 439..546 | 95 | -> | Minus |
2R | 20641996..20642420 | 12..438 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:00 Download gff for
BS17504.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16529333..16529435 | 439..546 | 95 | -> | Minus |
arm_2R | 16529501..16529925 | 12..438 | 99 | | Minus |
BS17504.5prime Sequence
546 bp (546 high quality bases) assembled on 2007-05-15
> BS17504.5prime
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACTAGAAGCTTTCTAGACC
BS17504.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-PA | 516 | CG11110-RA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-RA | 752 | CG11110-RA | 95..612 | 16..533 | 2590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20641995..20642418 | 110..533 | 2120 | 100 | Plus |
2R | 25286936 | 2R | 20641836..20641931 | 16..111 | 480 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 20:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hobo | 2959 | hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). | 1860..1910 | 495..544 | 108 | 70.6 | Plus |
BS17504.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:35 Download gff for
BS17504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-PA | 1..516 | 17..532 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:50 Download gff for
BS17504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..614 | 3..537 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:30 Download gff for
BS17504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11110-RA | 87..614 | 3..537 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:30 Download gff for
BS17504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20641828..20641930 | 3..110 | 95 | -> | Plus |
2R | 20641996..20642420 | 111..537 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:50 Download gff for
BS17504.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16529333..16529435 | 3..110 | 95 | -> | Plus |
arm_2R | 16529501..16529925 | 111..537 | 99 | | Plus |
BS17504.pep Sequence
Translation from 16 to 531
> BS17504.pep
MAFRFFGKSLLYALPLGVTFLDCVGYVARVDGISMQPALNPVPDEKDYVF
LLRWGTHNSQVERGDIISLISPKDPAQKIIKRVVGLQGDVVSTLGYKHEI
VRVPEGHCWVEGDHTGHSMDSNTFGPVALGLMSARAVAIVWPPERWRILE
NELPRRRRPIQASKNSSNYYN*
BS17504.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11110-PA | 171 | CG11110-PA | 1..171 | 1..171 | 910 | 100 | Plus |
CG9240-PA | 166 | CG9240-PA | 9..159 | 4..142 | 169 | 33.1 | Plus |
CG9240-PB | 128 | CG9240-PB | 1..121 | 35..142 | 157 | 34.9 | Plus |