Clone BS17504 Report

Search the DGRC for BS17504

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG11110-RA
Protein status:BS17504.pep: full length peptide match
Sequenced Size:548

Clone Sequence Records

BS17504.complete Sequence

548 bp assembled on 2010-02-09

GenBank Submission: KX801108

> BS17504.complete
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACTAGAAGCTTTCTAGACCAT

BS17504.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 516 CG11110-PA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 752 CG11110-RA 95..612 16..533 2590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20641995..20642418 110..533 2120 100 Plus
2R 25286936 2R 20641836..20641931 16..111 480 100 Plus
Blast to na_te.dros performed 2014-11-28 03:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1860..1910 495..544 108 70.6 Plus

BS17504.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:18 Download gff for BS17504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:07 Download gff for BS17504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 36..551 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:21 Download gff for BS17504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 96..611 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:18 Download gff for BS17504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 27..551 3..532 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:34 Download gff for BS17504.complete
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 96..611 17..532 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:34 Download gff for BS17504.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20641837..20641930 17..110 100 -> Plus
2R 20641996..20642417 111..532 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:21 Download gff for BS17504.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529342..16529435 17..110 100 -> Plus
arm_2R 16529501..16529922 111..532 100   Plus

BS17504.3prime Sequence

546 bp (546 high quality bases) assembled on 2007-05-15

> BS17504.3prime
ATGGTCTAGAAAGCTTCTAGTTGTAGTAGTTGCTGGAGTTCTTGGAGGCC
TGTATGGGTCTCCGTCGCCGCGGCAGTTCGTTCTCCAGTATTCGCCAGCG
TTCCGGTGGCCACACGATGGCCACTGCCCGCGCGGACATCAGGCCCAGGG
CGACGGGTCCAAAGGTATTGCTGTCCATGGAGTGGCCTGTGTGATCGCCC
TCCACCCAACAATGTCCTTCGGGTACGCGAACGATCTCGTGCTTGTAGCC
CAGCGTGGACACGACGTCGCCCTGCAGCCCCACCACGCGCTTGATAATCT
TCTGGGCGGGATCCTTGGGTGAAATGAGCGATATTATGTCGCCGCGCTCC
ACCTGACTGTTGTGGGTGCCCCAGCGCAGCAGGAACACATAGTCCTTTTC
ATCCGGCACGGGATTGAGAGCGGGCTGCATGGAGATGCCATCCACCCTGG
CCACATAACCAACGCAGTCCAGGAAAGTGACGCCAAGTGGCAGAGCGTAC
AGCAAGGACTTGCCAAAGAACCGAAATGCCATGTCGACTGATAACT

BS17504.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-PA 516 CG11110-RA 1..516 532..17 2580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 752 CG11110-RA 95..612 533..16 2590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20641995..20642418 439..16 2120 100 Minus
2R 25286936 2R 20641836..20641931 533..438 480 100 Minus
Blast to na_te.dros performed 2015-02-12 10:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1860..1910 54..5 108 70.6 Minus

BS17504.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:41 Download gff for BS17504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-PA 1..516 17..532 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:52:00 Download gff for BS17504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..614 12..546 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:24:33 Download gff for BS17504.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..614 12..546 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:24:33 Download gff for BS17504.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20641828..20641930 439..546 95 -> Minus
2R 20641996..20642420 12..438 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:52:00 Download gff for BS17504.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529333..16529435 439..546 95 -> Minus
arm_2R 16529501..16529925 12..438 99   Minus

BS17504.5prime Sequence

546 bp (546 high quality bases) assembled on 2007-05-15

> BS17504.5prime
GAAGTTATCAGTCGACATGGCATTTCGGTTCTTTGGCAAGTCCTTGCTGT
ACGCTCTGCCACTTGGCGTCACTTTCCTGGACTGCGTTGGTTATGTGGCC
AGGGTGGATGGCATCTCCATGCAGCCCGCTCTCAATCCCGTGCCGGATGA
AAAGGACTATGTGTTCCTGCTGCGCTGGGGCACCCACAACAGTCAGGTGG
AGCGCGGCGACATAATATCGCTCATTTCACCCAAGGATCCCGCCCAGAAG
ATTATCAAGCGCGTGGTGGGGCTGCAGGGCGACGTCGTGTCCACGCTGGG
CTACAAGCACGAGATCGTTCGCGTACCCGAAGGACATTGTTGGGTGGAGG
GCGATCACACAGGCCACTCCATGGACAGCAATACCTTTGGACCCGTCGCC
CTGGGCCTGATGTCCGCGCGGGCAGTGGCCATCGTGTGGCCACCGGAACG
CTGGCGAATACTGGAGAACGAACTGCCGCGGCGACGGAGACCCATACAGG
CCTCCAAGAACTCCAGCAACTACTACAACTAGAAGCTTTCTAGACC

BS17504.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-PA 516 CG11110-RA 1..516 17..532 2580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-RA 752 CG11110-RA 95..612 16..533 2590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20641995..20642418 110..533 2120 100 Plus
2R 25286936 2R 20641836..20641931 16..111 480 100 Plus
Blast to na_te.dros performed 2015-02-10 20:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
hobo 2959 hobo DMHFL1 2959bp Derived from M69216 (g157606) (Rel. 41, Last updated, Version 3). 1860..1910 495..544 108 70.6 Plus

BS17504.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:35 Download gff for BS17504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-PA 1..516 17..532 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:50 Download gff for BS17504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..614 3..537 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:30 Download gff for BS17504.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11110-RA 87..614 3..537 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:30 Download gff for BS17504.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20641828..20641930 3..110 95 -> Plus
2R 20641996..20642420 111..537 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:50 Download gff for BS17504.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16529333..16529435 3..110 95 -> Plus
arm_2R 16529501..16529925 111..537 99   Plus

BS17504.pep Sequence

Translation from 16 to 531

> BS17504.pep
MAFRFFGKSLLYALPLGVTFLDCVGYVARVDGISMQPALNPVPDEKDYVF
LLRWGTHNSQVERGDIISLISPKDPAQKIIKRVVGLQGDVVSTLGYKHEI
VRVPEGHCWVEGDHTGHSMDSNTFGPVALGLMSARAVAIVWPPERWRILE
NELPRRRRPIQASKNSSNYYN*

BS17504.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG11110-PA 171 CG11110-PA 1..171 1..171 910 100 Plus
CG9240-PA 166 CG9240-PA 9..159 4..142 169 33.1 Plus
CG9240-PB 128 CG9240-PB 1..121 35..142 157 34.9 Plus