Clone BS17505 Report

Search the DGRC for BS17505

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG14362-RA
Protein status:BS17505.pep: full length peptide match
Sequenced Size:653

Clone Sequence Records

BS17505.complete Sequence

653 bp assembled on 2010-02-09

GenBank Submission: KX804045

> BS17505.complete
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGTAAAAGCTTTCTAGAC
CAT

BS17505.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 621 CG14362-PA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 688 CG14362-RA 6..626 17..637 3105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13855039..13855308 371..102 1350 100 Minus
3R 32079331 3R 13854661..13854926 637..372 1330 100 Minus
3R 32079331 3R 13855365..13855449 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:47 has no hits.

BS17505.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:19 Download gff for BS17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:08 Download gff for BS17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..619 17..635 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:25 Download gff for BS17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 6..624 17..635 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:20 Download gff for BS17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:38 Download gff for BS17505.complete
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 6..624 17..635 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:38 Download gff for BS17505.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13854663..13854926 372..635 100 <- Minus
3R 13855039..13855308 102..371 100 <- Minus
3R 13855365..13855449 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:25 Download gff for BS17505.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9680385..9680648 372..635 100 <- Minus
arm_3R 9680761..9681030 102..371 100 <- Minus
arm_3R 9681087..9681171 17..101 100   Minus

BS17505.3prime Sequence

651 bp (651 high quality bases) assembled on 2007-05-15

> BS17505.3prime
ATGGTCTAGAAAGCTTTTACAAATCATCTGTGGTTCGACCATGGTATTCG
GGTATCCAGGTGACCATCATTTCGGTCATGTCGAAGACTGCGAATGCTTT
GCAGAAGTCTTGGAACATTATTTGGTTCGAGTCCGTATGATCCATTTCCT
TCATTATGGTATTCACAATGCGCATTATCTGCACGTGATCCAATAGATTT
GAGAACAGCTTGTGGACAACTACAACCAAGTCATACTTTGTAATACGACC
GTCCTTGTTGTTATCGTACATGTTGAAAATTAACCTTAATTTCTTGTCCA
TCATCACATTTTTTAGCTCATTGGAGGTTTTAAGAGAATGGGCCTGAAAG
GTGCTCAGAAACAGAGCGAAATCCACAAAGGTAATTGTCACTTTATTCCC
GAACATGGAGTTCAATATGGTGGGCAGCAAGGGGTTTAGTTGCAGTAGTC
CTGAATAGAAATTGTACTTGTGCAGATGACTTGGGGGATCTTTGCCTCCT
CCTGAAAACTGGTGGAATCGAATATACAGATACTTGATCTGACTACGACT
TAGTGCTGTATTCATCCTGAGGGTGTTCATAATCTCTTGTGGAACTGAGG
GATACGAGGAGAACTTCCTCAAACACAGACATCCCATGTCGACTGATAAC
T

BS17505.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-PA 621 CG14362-RA 1..621 637..17 3105 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:37:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 688 CG14362-RA 6..626 637..17 3105 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:37:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13855039..13855308 283..552 1350 100 Plus
3R 32079331 3R 13854661..13854926 17..282 1330 100 Plus
3R 32079331 3R 13855365..13855449 553..637 425 100 Plus
Blast to na_te.dros performed on 2015-02-12 16:37:32 has no hits.

BS17505.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:50 Download gff for BS17505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-PA 1..621 17..637 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:29 Download gff for BS17505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..630 14..639 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:24 Download gff for BS17505.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..630 14..639 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:24 Download gff for BS17505.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 13854657..13854926 14..282 99 <- Plus
3R 13855039..13855308 283..552 100 <- Plus
3R 13855365..13855453 553..645 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:29 Download gff for BS17505.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9680379..9680648 14..282 99 <- Plus
arm_3R 9680761..9681030 283..552 100 <- Plus
arm_3R 9681087..9681175 553..645 95   Plus

BS17505.5prime Sequence

651 bp (651 high quality bases) assembled on 2007-05-15

> BS17505.5prime
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGTAAAAGCTTTCTAGAC
C

BS17505.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-PA 621 CG14362-RA 1..621 17..637 3105 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-RA 688 CG14362-RA 6..626 17..637 3105 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13855039..13855308 371..102 1350 100 Minus
3R 32079331 3R 13854661..13854926 637..372 1330 100 Minus
3R 32079331 3R 13855365..13855449 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:36:49 has no hits.

BS17505.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:43 Download gff for BS17505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-PA 1..621 17..637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:30 Download gff for BS17505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..630 15..640 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:02 Download gff for BS17505.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14362-RA 1..630 15..640 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:02 Download gff for BS17505.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 13854657..13854926 372..640 99 <- Minus
3R 13855039..13855308 102..371 100 <- Minus
3R 13855365..13855453 9..101 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:30 Download gff for BS17505.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9680379..9680648 372..640 99 <- Minus
arm_3R 9680761..9681030 102..371 100 <- Minus
arm_3R 9681087..9681175 9..101 95   Minus

BS17505.pep Sequence

Translation from 16 to 636

> BS17505.pep
MGCLCLRKFSSYPSVPQEIMNTLRMNTALSRSQIKYLYIRFHQFSGGGKD
PPSHLHKYNFYSGLLQLNPLLPTILNSMFGNKVTITFVDFALFLSTFQAH
SLKTSNELKNVMMDKKLRLIFNMYDNNKDGRITKYDLVVVVHKLFSNLLD
HVQIMRIVNTIMKEMDHTDSNQIMFQDFCKAFAVFDMTEMMVTWIPEYHG
RTTDDL*

BS17505.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG14362-PA 206 CG14362-PA 1..206 1..206 1086 100 Plus
elm-PB 189 CG2185-PB 17..183 23..191 147 26.9 Plus
elm-PA 189 CG2185-PA 17..183 23..191 147 26.9 Plus