Clone Sequence Records
BS17505.complete Sequence
653 bp assembled on 2010-02-09
GenBank Submission: KX804045
> BS17505.complete
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGTAAAAGCTTTCTAGAC
CAT
BS17505.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 621 | CG14362-PA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 688 | CG14362-RA | 6..626 | 17..637 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13855039..13855308 | 371..102 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 13854661..13854926 | 637..372 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 13855365..13855449 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:47 has no hits.
BS17505.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:19 Download gff for
BS17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:08 Download gff for
BS17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..619 | 17..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:25 Download gff for
BS17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 6..624 | 17..635 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:20 Download gff for
BS17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:38 Download gff for
BS17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 6..624 | 17..635 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:38 Download gff for
BS17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13854663..13854926 | 372..635 | 100 | <- | Minus |
3R | 13855039..13855308 | 102..371 | 100 | <- | Minus |
3R | 13855365..13855449 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:25 Download gff for
BS17505.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9680385..9680648 | 372..635 | 100 | <- | Minus |
arm_3R | 9680761..9681030 | 102..371 | 100 | <- | Minus |
arm_3R | 9681087..9681171 | 17..101 | 100 | | Minus |
BS17505.3prime Sequence
651 bp (651 high quality bases) assembled on 2007-05-15
> BS17505.3prime
ATGGTCTAGAAAGCTTTTACAAATCATCTGTGGTTCGACCATGGTATTCG
GGTATCCAGGTGACCATCATTTCGGTCATGTCGAAGACTGCGAATGCTTT
GCAGAAGTCTTGGAACATTATTTGGTTCGAGTCCGTATGATCCATTTCCT
TCATTATGGTATTCACAATGCGCATTATCTGCACGTGATCCAATAGATTT
GAGAACAGCTTGTGGACAACTACAACCAAGTCATACTTTGTAATACGACC
GTCCTTGTTGTTATCGTACATGTTGAAAATTAACCTTAATTTCTTGTCCA
TCATCACATTTTTTAGCTCATTGGAGGTTTTAAGAGAATGGGCCTGAAAG
GTGCTCAGAAACAGAGCGAAATCCACAAAGGTAATTGTCACTTTATTCCC
GAACATGGAGTTCAATATGGTGGGCAGCAAGGGGTTTAGTTGCAGTAGTC
CTGAATAGAAATTGTACTTGTGCAGATGACTTGGGGGATCTTTGCCTCCT
CCTGAAAACTGGTGGAATCGAATATACAGATACTTGATCTGACTACGACT
TAGTGCTGTATTCATCCTGAGGGTGTTCATAATCTCTTGTGGAACTGAGG
GATACGAGGAGAACTTCCTCAAACACAGACATCCCATGTCGACTGATAAC
T
BS17505.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-PA | 621 | CG14362-RA | 1..621 | 637..17 | 3105 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:37:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 688 | CG14362-RA | 6..626 | 637..17 | 3105 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:37:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13855039..13855308 | 283..552 | 1350 | 100 | Plus |
3R | 32079331 | 3R | 13854661..13854926 | 17..282 | 1330 | 100 | Plus |
3R | 32079331 | 3R | 13855365..13855449 | 553..637 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:37:32 has no hits.
BS17505.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:50 Download gff for
BS17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-PA | 1..621 | 17..637 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:29 Download gff for
BS17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..630 | 14..639 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:51:24 Download gff for
BS17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..630 | 14..639 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:51:24 Download gff for
BS17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13854657..13854926 | 14..282 | 99 | <- | Plus |
3R | 13855039..13855308 | 283..552 | 100 | <- | Plus |
3R | 13855365..13855453 | 553..645 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:29 Download gff for
BS17505.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9680379..9680648 | 14..282 | 99 | <- | Plus |
arm_3R | 9680761..9681030 | 283..552 | 100 | <- | Plus |
arm_3R | 9681087..9681175 | 553..645 | 95 | | Plus |
BS17505.5prime Sequence
651 bp (651 high quality bases) assembled on 2007-05-15
> BS17505.5prime
GAAGTTATCAGTCGACATGGGATGTCTGTGTTTGAGGAAGTTCTCCTCGT
ATCCCTCAGTTCCACAAGAGATTATGAACACCCTCAGGATGAATACAGCA
CTAAGTCGTAGTCAGATCAAGTATCTGTATATTCGATTCCACCAGTTTTC
AGGAGGAGGCAAAGATCCCCCAAGTCATCTGCACAAGTACAATTTCTATT
CAGGACTACTGCAACTAAACCCCTTGCTGCCCACCATATTGAACTCCATG
TTCGGGAATAAAGTGACAATTACCTTTGTGGATTTCGCTCTGTTTCTGAG
CACCTTTCAGGCCCATTCTCTTAAAACCTCCAATGAGCTAAAAAATGTGA
TGATGGACAAGAAATTAAGGTTAATTTTCAACATGTACGATAACAACAAG
GACGGTCGTATTACAAAGTATGACTTGGTTGTAGTTGTCCACAAGCTGTT
CTCAAATCTATTGGATCACGTGCAGATAATGCGCATTGTGAATACCATAA
TGAAGGAAATGGATCATACGGACTCGAACCAAATAATGTTCCAAGACTTC
TGCAAAGCATTCGCAGTCTTCGACATGACCGAAATGATGGTCACCTGGAT
ACCCGAATACCATGGTCGAACCACAGATGATTTGTAAAAGCTTTCTAGAC
C
BS17505.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-PA | 621 | CG14362-RA | 1..621 | 17..637 | 3105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-RA | 688 | CG14362-RA | 6..626 | 17..637 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 13855039..13855308 | 371..102 | 1350 | 100 | Minus |
3R | 32079331 | 3R | 13854661..13854926 | 637..372 | 1330 | 100 | Minus |
3R | 32079331 | 3R | 13855365..13855449 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:36:49 has no hits.
BS17505.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:43 Download gff for
BS17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-PA | 1..621 | 17..637 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:30 Download gff for
BS17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..630 | 15..640 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:12:02 Download gff for
BS17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14362-RA | 1..630 | 15..640 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:12:02 Download gff for
BS17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 13854657..13854926 | 372..640 | 99 | <- | Minus |
3R | 13855039..13855308 | 102..371 | 100 | <- | Minus |
3R | 13855365..13855453 | 9..101 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:30 Download gff for
BS17505.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9680379..9680648 | 372..640 | 99 | <- | Minus |
arm_3R | 9680761..9681030 | 102..371 | 100 | <- | Minus |
arm_3R | 9681087..9681175 | 9..101 | 95 | | Minus |
BS17505.pep Sequence
Translation from 16 to 636
> BS17505.pep
MGCLCLRKFSSYPSVPQEIMNTLRMNTALSRSQIKYLYIRFHQFSGGGKD
PPSHLHKYNFYSGLLQLNPLLPTILNSMFGNKVTITFVDFALFLSTFQAH
SLKTSNELKNVMMDKKLRLIFNMYDNNKDGRITKYDLVVVVHKLFSNLLD
HVQIMRIVNTIMKEMDHTDSNQIMFQDFCKAFAVFDMTEMMVTWIPEYHG
RTTDDL*
BS17505.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14362-PA | 206 | CG14362-PA | 1..206 | 1..206 | 1086 | 100 | Plus |
elm-PB | 189 | CG2185-PB | 17..183 | 23..191 | 147 | 26.9 | Plus |
elm-PA | 189 | CG2185-PA | 17..183 | 23..191 | 147 | 26.9 | Plus |