Clone Sequence Records
BS17506.complete Sequence
329 bp assembled on 2010-02-09
GenBank Submission: KX801956
> BS17506.complete
GAAGTTATCAGTCGACATGCCGGTTTCCCCTGGAGAGGGGGAAGTCAATG
GCGGCGGAGATGTGGCCAAGAACGACTCCAACTCGCAGCAATCGGTGGAT
GGAATCGATGCGTTCGCCGCCTGCCAGAAGCCGCGTCCGGACACCAGTTC
CATGCCGGTTCGCCAGTACCTCGACCAGACGGTGGCCCCCATTTTGCTGC
ACGGACTGCAGGCTTTGGCCCGGGATCGCCCCAGTGATCCGATCAGCTAC
CTGGCCACCTATCTGCTGAAGAACAAGAACCGCTGCGATGAGGTCAAGAC
AGAAGAAAACTAGAAGCTTTCTAGACCAT
BS17506.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 297 | CG11591-PB | 1..297 | 17..313 | 1485 | 100 | Plus |
Dpy-30L2-RA | 297 | CG11591-PA | 1..297 | 17..313 | 1485 | 100 | Plus |
Dpy-30L1-RA | 405 | CG6444-PA | 238..345 | 164..271 | 180 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 506 | CG11591-RB | 45..341 | 17..313 | 1485 | 100 | Plus |
Dpy-30L2-RA | 550 | CG11591-RA | 89..385 | 17..313 | 1485 | 100 | Plus |
Dpy-30L1-RA | 655 | CG6444-RA | 403..510 | 164..271 | 180 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4047153..4047449 | 313..17 | 1485 | 100 | Minus |
2L | 23513712 | 2L | 10733055..10733162 | 164..271 | 180 | 77.8 | Plus |
Blast to na_te.dros performed 2014-11-28 03:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 3467..3504 | 288..325 | 109 | 76.3 | Plus |
BS17506.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:11 Download gff for
BS17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-RA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:31 Download gff for
BS17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-RA | 89..385 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:04 Download gff for
BS17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 89..385 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:11 Download gff for
BS17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-RA | 84..393 | 9..320 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:11 Download gff for
BS17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 89..385 | 17..313 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:11 Download gff for
BS17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4047153..4047449 | 17..313 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:04 Download gff for
BS17506.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4047153..4047449 | 17..313 | 100 | | Minus |
BS17506.5prime Sequence
327 bp (327 high quality bases) assembled on 2007-05-15
> BS17506.5prime
GAAGTTATCAGTCGACATGCCGGTTTCCCCTGGAGAGGGGGAAGTCAATG
GCGGCGGAGATGTGGCCAAGAACGACTCCAACTCGCAGCAATCGGTGGAT
GGAATCGATGCGTTCGCCGCCTGCCAGAAGCCGCGTCCGGACACCAGTTC
CATGCCGGTTCGCCAGTACCTCGACCAGACGGTGGCCCCCATTTTGCTGC
ACGGACTGCAGGCTTTGGCCCGGGATCGCCCCAGTGATCCGATCAGCTAC
CTGGCCACCTATCTGCTGAAGAACAAGAACCGCTGCGATGAGGTCAAGAC
AGAAGAAAACTAGAAGCTTTCTAGACC
BS17506.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11591-PA | 297 | CG11591-RA | 1..297 | 17..313 | 1485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 506 | CG11591-RB | 45..341 | 17..313 | 1485 | 100 | Plus |
Dpy-30L2-RA | 550 | CG11591-RA | 89..385 | 17..313 | 1485 | 100 | Plus |
Dpy-30L1-RA | 655 | CG6444-RA | 403..510 | 164..271 | 195 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4047153..4047449 | 313..17 | 1485 | 100 | Minus |
2L | 23513712 | 2L | 10733055..10733162 | 164..271 | 180 | 77.8 | Plus |
Blast to na_te.dros performed 2015-02-12 16:16:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 3467..3504 | 288..325 | 109 | 76.3 | Plus |
BS17506.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:47 Download gff for
BS17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-PA | 1..297 | 17..313 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:17:55 Download gff for
BS17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..393 | 9..320 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:32:46 Download gff for
BS17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..393 | 9..320 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:32:46 Download gff for
BS17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4047145..4047460 | 8..320 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:17:55 Download gff for
BS17506.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4047145..4047460 | 8..320 | 97 | | Minus |
BS17506.3prime Sequence
327 bp (327 high quality bases) assembled on 2007-05-15
> BS17506.3prime
ATGGTCTAGAAAGCTTCTAGTTTTCTTCTGTCTTGACCTCATCGCAGCGG
TTCTTGTTCTTCAGCAGATAGGTGGCCAGGTAGCTGATCGGATCACTGGG
GCGATCCCGGGCCAAAGCCTGCAGTCCGTGCAGCAAAATGGGGGCCACCG
TCTGGTCGAGGTACTGGCGAACCGGCATGGAACTGGTGTCCGGACGCGGC
TTCTGGCAGGCGGCGAACGCATCGATTCCATCCACCGATTGCTGCGAGTT
GGAGTCGTTCTTGGCCACATCTCCGCCGCCATTGACTTCCCCCTCTCCAG
GGGAAACCGGCATGTCGACTGATAACT
BS17506.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11591-PA | 297 | CG11591-RA | 1..297 | 313..17 | 1485 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-RB | 506 | CG11591-RB | 45..341 | 313..17 | 1485 | 100 | Minus |
Dpy-30L2-RA | 550 | CG11591-RA | 89..385 | 313..17 | 1485 | 100 | Minus |
Dpy-30L1-RA | 655 | CG6444-RA | 403..510 | 166..59 | 195 | 79.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4047153..4047449 | 17..313 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 10733055..10733162 | 166..59 | 180 | 77.8 | Minus |
Blast to na_te.dros performed 2015-02-12 05:32:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy | 7469 | gypsy DMGYPF1A 7469bp Derived from M12927 (g157583) (Rel. 44, Last updated, Version 6). | 3467..3504 | 42..5 | 109 | 76.3 | Minus |
BS17506.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:55 Download gff for
BS17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11591-PA | 1..297 | 17..313 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:43:27 Download gff for
BS17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..393 | 10..321 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:39:20 Download gff for
BS17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpy-30L2-RA | 84..393 | 10..321 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:39:20 Download gff for
BS17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4047145..4047460 | 10..322 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:43:27 Download gff for
BS17506.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4047145..4047460 | 10..322 | 97 | | Plus |
BS17506.pep Sequence
Translation from 16 to 312
> BS17506.pep
MPVSPGEGEVNGGGDVAKNDSNSQQSVDGIDAFAACQKPRPDTSSMPVRQ
YLDQTVAPILLHGLQALARDRPSDPISYLATYLLKNKNRCDEVKTEEN*
BS17506.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpy-30L2-PB | 98 | CG11591-PB | 1..98 | 1..98 | 512 | 100 | Plus |
Dpy-30L2-PA | 98 | CG11591-PA | 1..98 | 1..98 | 512 | 100 | Plus |
Dpy-30L1-PA | 134 | CG6444-PA | 64..122 | 34..92 | 226 | 67.8 | Plus |