Clone Sequence Records
BS17508.complete Sequence
269 bp assembled on 2010-02-09
GenBank Submission: KX802092
> BS17508.complete
GAAGTTATCAGTCGACATGTTCACCGAAACCGCTCTTGTTTCCAACTTCA
ATGGAGTGACAGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAG
AAGCTGCTGAAGACCATCAAGAAGGTCTTCAAGAACTCCAAGCCTTCGAA
GGAGATTCCGATCCCCAACATCATCTACTCTTGCAATACTGAGGAGGAGC
ACCAGAATTGGCTCAACGAACAACTGGAGGCCATGGCAATCCATCTTCAC
TGAAAGCTTTCTAGACCAT
BS17508.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 237 | CG12487-PA | 1..237 | 17..253 | 1185 | 100 | Plus |
CG13465-RA | 237 | CG13465-PA | 1..237 | 17..253 | 1140 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 627 | CG12487-RA | 58..294 | 17..253 | 1185 | 100 | Plus |
CG13465-RA | 602 | CG13465-RA | 40..276 | 17..253 | 1140 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14945832..14946068 | 253..17 | 1185 | 100 | Minus |
3L | 28110227 | 3L | 14944056..14944292 | 253..17 | 1140 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:51 has no hits.
BS17508.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:21 Download gff for
BS17508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 1..237 | 17..253 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:09 Download gff for
BS17508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 50..280 | 22..252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:27 Download gff for
BS17508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 63..293 | 22..252 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:21 Download gff for
BS17508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 45..286 | 17..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:39 Download gff for
BS17508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 63..293 | 22..252 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:39 Download gff for
BS17508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14945833..14946063 | 22..252 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:27 Download gff for
BS17508.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14938933..14939163 | 22..252 | 100 | | Minus |
BS17508.3prime Sequence
267 bp (267 high quality bases) assembled on 2007-05-15
> BS17508.3prime
ATGGTCTAGAAAGCTTTCAGTGAAGATGGATTGCCATGGCCTCCAGTTGT
TCGTTGAGCCAATTCTGGTGCTCCTCCTCAGTATTGCAAGAGTAGATGAT
GTTGGGGATCGGAATCTCCTTCGAAGGCTTGGAGTTCTTGAAGACCTTCT
TGATGGTCTTCAGCAGCTTCTTCAGGTTGGTGGAGGCGCCGGTAAGAGAT
TTCTTCTCTGTCACTCCATTGAAGTTGGAAACAAGAGCGGTTTCGGTGAA
CATGTCGACTGATAACT
BS17508.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12487-PA | 237 | BobA-RA | 1..237 | 253..17 | 1185 | 100 | Minus |
CG13465-PA | 237 | CG13465-RA | 8..237 | 246..17 | 1125 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 627 | CG12487-RA | 58..294 | 253..17 | 1185 | 100 | Minus |
CG13465-RA | 602 | CG13465-RA | 40..276 | 253..17 | 1140 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14945832..14946068 | 17..253 | 1185 | 100 | Plus |
3L | 28110227 | 3L | 14944056..14944292 | 17..253 | 1140 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:51:16 has no hits.
BS17508.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:34 Download gff for
BS17508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12487-PA | 1..237 | 17..253 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:28 Download gff for
BS17508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..299 | 8..253 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:40 Download gff for
BS17508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..299 | 8..253 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:40 Download gff for
BS17508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14945824..14946068 | 8..253 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:28 Download gff for
BS17508.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14938924..14939168 | 8..253 | 98 | | Plus |
BS17508.5prime Sequence
267 bp (267 high quality bases) assembled on 2007-05-15
> BS17508.5prime
GAAGTTATCAGTCGACATGTTCACCGAAACCGCTCTTGTTTCCAACTTCA
ATGGAGTGACAGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAG
AAGCTGCTGAAGACCATCAAGAAGGTCTTCAAGAACTCCAAGCCTTCGAA
GGAGATTCCGATCCCCAACATCATCTACTCTTGCAATACTGAGGAGGAGC
ACCAGAATTGGCTCAACGAACAACTGGAGGCCATGGCAATCCATCTTCAC
TGAAAGCTTTCTAGACC
BS17508.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12487-PA | 237 | BobA-RA | 1..237 | 17..253 | 1185 | 100 | Plus |
CG13465-PA | 237 | CG13465-RA | 8..237 | 24..253 | 1125 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:37:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-RA | 627 | CG12487-RA | 58..294 | 17..253 | 1185 | 100 | Plus |
CG13465-RA | 602 | CG13465-RA | 40..276 | 17..253 | 1140 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14945832..14946068 | 253..17 | 1185 | 100 | Minus |
3L | 28110227 | 3L | 14944056..14944292 | 253..17 | 1140 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:37:45 has no hits.
BS17508.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:41 Download gff for
BS17508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12487-PA | 1..237 | 17..253 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:19:37 Download gff for
BS17508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..299 | 17..262 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:03 Download gff for
BS17508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
BobA-RA | 58..299 | 17..262 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:03 Download gff for
BS17508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14945824..14946068 | 17..262 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:19:37 Download gff for
BS17508.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14938924..14939168 | 17..262 | 98 | | Minus |
BS17508.pep Sequence
Translation from 16 to 252
> BS17508.pep
MFTETALVSNFNGVTEKKSLTGASTNLKKLLKTIKKVFKNSKPSKEIPIP
NIIYSCNTEEEHQNWLNEQLEAMAIHLH*
BS17508.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BobA-PA | 78 | CG12487-PA | 1..78 | 1..78 | 403 | 100 | Plus |
CG13465-PA | 78 | CG13465-PA | 1..78 | 1..78 | 394 | 97.4 | Plus |