Clone BS17508 Report

Search the DGRC for BS17508

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptBobA-RA
Protein status:BS17508.pep: full length peptide match
Sequenced Size:269

Clone Sequence Records

BS17508.complete Sequence

269 bp assembled on 2010-02-09

GenBank Submission: KX802092

> BS17508.complete
GAAGTTATCAGTCGACATGTTCACCGAAACCGCTCTTGTTTCCAACTTCA
ATGGAGTGACAGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAG
AAGCTGCTGAAGACCATCAAGAAGGTCTTCAAGAACTCCAAGCCTTCGAA
GGAGATTCCGATCCCCAACATCATCTACTCTTGCAATACTGAGGAGGAGC
ACCAGAATTGGCTCAACGAACAACTGGAGGCCATGGCAATCCATCTTCAC
TGAAAGCTTTCTAGACCAT

BS17508.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
BobA-RA 237 CG12487-PA 1..237 17..253 1185 100 Plus
CG13465-RA 237 CG13465-PA 1..237 17..253 1140 98.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
BobA-RA 627 CG12487-RA 58..294 17..253 1185 100 Plus
CG13465-RA 602 CG13465-RA 40..276 17..253 1140 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14945832..14946068 253..17 1185 100 Minus
3L 28110227 3L 14944056..14944292 253..17 1140 98.7 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:51 has no hits.

BS17508.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:21 Download gff for BS17508.complete
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 1..237 17..253 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:09 Download gff for BS17508.complete
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 50..280 22..252 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:27 Download gff for BS17508.complete
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 63..293 22..252 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:21 Download gff for BS17508.complete
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 45..286 17..262 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:39 Download gff for BS17508.complete
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 63..293 22..252 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:39 Download gff for BS17508.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14945833..14946063 22..252 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:27 Download gff for BS17508.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14938933..14939163 22..252 100   Minus

BS17508.3prime Sequence

267 bp (267 high quality bases) assembled on 2007-05-15

> BS17508.3prime
ATGGTCTAGAAAGCTTTCAGTGAAGATGGATTGCCATGGCCTCCAGTTGT
TCGTTGAGCCAATTCTGGTGCTCCTCCTCAGTATTGCAAGAGTAGATGAT
GTTGGGGATCGGAATCTCCTTCGAAGGCTTGGAGTTCTTGAAGACCTTCT
TGATGGTCTTCAGCAGCTTCTTCAGGTTGGTGGAGGCGCCGGTAAGAGAT
TTCTTCTCTGTCACTCCATTGAAGTTGGAAACAAGAGCGGTTTCGGTGAA
CATGTCGACTGATAACT

BS17508.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG12487-PA 237 BobA-RA 1..237 253..17 1185 100 Minus
CG13465-PA 237 CG13465-RA 8..237 246..17 1125 99.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
BobA-RA 627 CG12487-RA 58..294 253..17 1185 100 Minus
CG13465-RA 602 CG13465-RA 40..276 253..17 1140 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14945832..14946068 17..253 1185 100 Plus
3L 28110227 3L 14944056..14944292 17..253 1140 98.7 Plus
Blast to na_te.dros performed on 2015-02-12 10:51:16 has no hits.

BS17508.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:34 Download gff for BS17508.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12487-PA 1..237 17..253 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:28 Download gff for BS17508.3prime
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 58..299 8..253 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:40 Download gff for BS17508.3prime
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 58..299 8..253 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:40 Download gff for BS17508.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14945824..14946068 8..253 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:28 Download gff for BS17508.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14938924..14939168 8..253 98   Plus

BS17508.5prime Sequence

267 bp (267 high quality bases) assembled on 2007-05-15

> BS17508.5prime
GAAGTTATCAGTCGACATGTTCACCGAAACCGCTCTTGTTTCCAACTTCA
ATGGAGTGACAGAGAAGAAATCTCTTACCGGCGCCTCCACCAACCTGAAG
AAGCTGCTGAAGACCATCAAGAAGGTCTTCAAGAACTCCAAGCCTTCGAA
GGAGATTCCGATCCCCAACATCATCTACTCTTGCAATACTGAGGAGGAGC
ACCAGAATTGGCTCAACGAACAACTGGAGGCCATGGCAATCCATCTTCAC
TGAAAGCTTTCTAGACC

BS17508.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12487-PA 237 BobA-RA 1..237 17..253 1185 100 Plus
CG13465-PA 237 CG13465-RA 8..237 24..253 1125 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:37:46
Subject Length Description Subject Range Query Range Score Percent Strand
BobA-RA 627 CG12487-RA 58..294 17..253 1185 100 Plus
CG13465-RA 602 CG13465-RA 40..276 17..253 1140 98.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14945832..14946068 253..17 1185 100 Minus
3L 28110227 3L 14944056..14944292 253..17 1140 98.7 Minus
Blast to na_te.dros performed on 2015-02-13 06:37:45 has no hits.

BS17508.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:41 Download gff for BS17508.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12487-PA 1..237 17..253 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:19:37 Download gff for BS17508.5prime
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 58..299 17..262 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:16:03 Download gff for BS17508.5prime
Subject Subject Range Query Range Percent Splice Strand
BobA-RA 58..299 17..262 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:16:03 Download gff for BS17508.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14945824..14946068 17..262 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:19:37 Download gff for BS17508.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14938924..14939168 17..262 98   Minus

BS17508.pep Sequence

Translation from 16 to 252

> BS17508.pep
MFTETALVSNFNGVTEKKSLTGASTNLKKLLKTIKKVFKNSKPSKEIPIP
NIIYSCNTEEEHQNWLNEQLEAMAIHLH*

BS17508.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
BobA-PA 78 CG12487-PA 1..78 1..78 403 100 Plus
CG13465-PA 78 CG13465-PA 1..78 1..78 394 97.4 Plus