Clone Sequence Records
BS17509.complete Sequence
581 bp assembled on 2010-02-09
GenBank Submission: KX805288
> BS17509.complete
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACTAAAAGCTTTCTAGACCAT
BS17509.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 549 | CG42299-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG42300-RA | 546 | CG42300-PA | 1..546 | 17..565 | 2590 | 98.5 | Plus |
cerv-RD | 693 | CG15645-PD | 203..672 | 111..562 | 890 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 679 | CG42299-RA | 21..569 | 17..565 | 2745 | 100 | Plus |
CG42300-RA | 726 | CG42300-RA | 71..616 | 17..565 | 2590 | 98.5 | Plus |
cerv-RD | 1141 | CG15645-RD | 485..954 | 111..562 | 890 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15575057..15575552 | 565..70 | 2480 | 100 | Minus |
X | 23542271 | X | 15555363..15555855 | 565..70 | 2340 | 98.6 | Minus |
X | 23542271 | X | 15577173..15577642 | 562..111 | 890 | 79.8 | Minus |
3L | 28110227 | 3L | 17479760..17480054 | 268..562 | 605 | 80.3 | Plus |
X | 23542271 | X | 15575609..15575663 | 71..17 | 275 | 100 | Minus |
3L | 28110227 | 3L | 17479577..17479712 | 112..247 | 275 | 80.1 | Plus |
X | 23542271 | X | 15555921..15555975 | 71..17 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:55 has no hits.
BS17509.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:22 Download gff for
BS17509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:11 Download gff for
BS17509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..567 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:29 Download gff for
BS17509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..567 | 17..563 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:22 Download gff for
BS17509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..569 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:41 Download gff for
BS17509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..567 | 17..563 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:41 Download gff for
BS17509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15575059..15575550 | 72..563 | 100 | <- | Minus |
X | 15575609..15575663 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:29 Download gff for
BS17509.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15469092..15469583 | 72..563 | 100 | <- | Minus |
arm_X | 15469642..15469696 | 17..71 | 100 | | Minus |
BS17509.3prime Sequence
579 bp (579 high quality bases) assembled on 2007-05-15
> BS17509.3prime
ATGGTCTAGAAAGCTTTTAGTCCTCATCCGAGGAAGTTTCATTCTTGATC
TTGTCGGACTTGCGCTTTTGCAACTCCTGCTCCACGTCGGGGTCCTTGAC
CAGGTGCTCTAACTTGATGTCGGACAAGTTGGGACAGTCGCGCACCGGGC
ATAGGATGCCAATGTTGTCCTTGATGATCATTAAAACCGTTTCGCGGTCG
TAGATATGACCGCACCTTTTGTTGCGCACGGGGTGCTTTATCAGGAGCTT
GGACCAGGGATCGTGGAACGGGACGACCTCGACGCCGAAGTCTTCCATGA
TAAGGTCCTCATCAAGGCCGGCGATATTCTTTTGAGCTTCTGATTCCACC
GCATTCATGTAGTTCGTGTCCTCAAGTGAGTTATTGACATCGATGCGCAT
CTGCTCCACAGCTTCGGGGCGCTCCTTGCAGACTTCCTCGGACTTCTCGA
TGGTGTTGCTAGAGTTTTTGGTTAGCAACTTCTCCCCGTCATCGCTGGAA
TTGGACACGACTTCTGCCATTTCCCTGAAGAGCTTTTGGTGGGATTTCGG
GTCCATTTTGATCATGTCGACTGATAACT
BS17509.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32584-PB | 549 | CG32584-RB | 1..549 | 565..17 | 2745 | 100 | Minus |
CG32584-PA | 366 | CG32584-RA | 1..311 | 565..255 | 1555 | 100 | Minus |
CG15645-PB | 534 | CG15645-RB | 44..138 | 471..377 | 325 | 93.6 | Minus |
CG15645-PA | 693 | CG15645-RA | 203..297 | 471..377 | 325 | 93.6 | Minus |
CG13732-PA | 702 | CG13732-RA | 399..521 | 314..192 | 290 | 89.4 | Minus |
CG32584-PA | 366 | CG32584-RA | 311..366 | 236..181 | 255 | 98.2 | Minus |
CG15645-PB | 534 | CG15645-RB | 290..341 | 243..192 | 160 | 92.3 | Minus |
CG15645-PA | 693 | CG15645-RA | 449..500 | 243..192 | 160 | 92.3 | Minus |
CG13732-PA | 702 | CG13732-RA | 216..302 | 470..384 | 160 | 87.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 679 | CG42299-RA | 21..569 | 565..17 | 2745 | 100 | Minus |
CG42300-RA | 726 | CG42300-RA | 71..616 | 565..17 | 2615 | 98.5 | Minus |
cerv-RD | 1141 | CG15645-RD | 485..954 | 471..20 | 920 | 80.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:42:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15575057..15575552 | 17..512 | 2480 | 100 | Plus |
X | 23542271 | X | 15555363..15555855 | 17..512 | 2340 | 98.6 | Plus |
X | 23542271 | X | 15577173..15577642 | 20..471 | 890 | 79.8 | Plus |
3L | 28110227 | 3L | 17479760..17480054 | 314..20 | 605 | 80.3 | Minus |
X | 23542271 | X | 15575609..15575663 | 511..565 | 275 | 100 | Plus |
3L | 28110227 | 3L | 17479577..17479712 | 470..335 | 275 | 80.1 | Minus |
X | 23542271 | X | 15555921..15555975 | 511..565 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:42:47 has no hits.
BS17509.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:47 Download gff for
BS17509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32584-PB | 1..549 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:27 Download gff for
BS17509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..569 | 17..565 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:45 Download gff for
BS17509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..569 | 17..565 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:45 Download gff for
BS17509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15575051..15575550 | 14..510 | 99 | <- | Plus |
X | 15575609..15575663 | 511..565 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:27 Download gff for
BS17509.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15469084..15469583 | 14..510 | 99 | <- | Plus |
arm_X | 15469642..15469696 | 511..565 | 100 | | Plus |
BS17509.5prime Sequence
579 bp (579 high quality bases) assembled on 2007-05-15
> BS17509.5prime
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACTAAAAGCTTTCTAGACC
BS17509.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32584-PB | 549 | CG32584-RB | 1..549 | 17..565 | 2745 | 100 | Plus |
CG32584-PA | 366 | CG32584-RA | 1..311 | 17..327 | 1555 | 100 | Plus |
CG15645-PB | 534 | CG15645-RB | 44..138 | 111..205 | 325 | 93.6 | Plus |
CG15645-PA | 693 | CG15645-RA | 203..297 | 111..205 | 325 | 93.6 | Plus |
CG13732-PA | 702 | CG13732-RA | 399..521 | 268..390 | 290 | 89.4 | Plus |
CG32584-PA | 366 | CG32584-RA | 311..366 | 346..401 | 255 | 98.2 | Plus |
CG15645-PB | 534 | CG15645-RB | 290..341 | 339..390 | 160 | 92.3 | Plus |
CG15645-PA | 693 | CG15645-RA | 449..500 | 339..390 | 160 | 92.3 | Plus |
CG13732-PA | 702 | CG13732-RA | 216..302 | 112..198 | 160 | 87.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-RA | 679 | CG42299-RA | 21..569 | 17..565 | 2745 | 100 | Plus |
CG42300-RA | 726 | CG42300-RA | 71..616 | 17..565 | 2615 | 98.5 | Plus |
cerv-RD | 1141 | CG15645-RD | 485..954 | 111..562 | 920 | 80.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15575057..15575552 | 565..70 | 2480 | 100 | Minus |
X | 23542271 | X | 15555363..15555855 | 565..70 | 2340 | 98.6 | Minus |
X | 23542271 | X | 15577173..15577642 | 562..111 | 890 | 79.8 | Minus |
3L | 28110227 | 3L | 17479760..17480054 | 268..562 | 605 | 80.3 | Plus |
X | 23542271 | X | 15575609..15575663 | 71..17 | 275 | 100 | Minus |
3L | 28110227 | 3L | 17479577..17479712 | 112..247 | 275 | 80.1 | Plus |
X | 23542271 | X | 15555921..15555975 | 71..17 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:26:36 has no hits.
BS17509.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:49 Download gff for
BS17509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32584-PB | 1..549 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:39 Download gff for
BS17509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..569 | 17..565 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:12 Download gff for
BS17509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42299-RA | 21..569 | 17..565 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:12 Download gff for
BS17509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15575051..15575550 | 72..568 | 99 | <- | Minus |
X | 15575609..15575663 | 17..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:39 Download gff for
BS17509.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15469084..15469583 | 72..568 | 99 | <- | Minus |
arm_X | 15469642..15469696 | 17..71 | 100 | | Minus |
BS17509.pep Sequence
Translation from 16 to 564
> BS17509.pep
MIKMDPKSHQKLFREMAEVVSNSSDDGEKLLTKNSSNTIEKSEEVCKERP
EAVEQMRIDVNNSLEDTNYMNAVESEAQKNIAGLDEDLIMEDFGVEVVPF
HDPWSKLLIKHPVRNKRCGHIYDRETVLMIIKDNIGILCPVRDCPNLSDI
KLEHLVKDPDVEQELQKRKSDKIKNETSSDED*
BS17509.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42299-PA | 182 | CG32584-PA | 1..182 | 1..182 | 945 | 100 | Plus |
CG42300-PA | 181 | CG42300-PA | 1..181 | 1..182 | 919 | 98.4 | Plus |
cerv-PD | 230 | CG15645-PD | 17..224 | 9..182 | 496 | 54.8 | Plus |
cerv-PA | 230 | CG15645-PA | 17..224 | 9..182 | 496 | 54.8 | Plus |
cerv-PC | 177 | CG15645-PC | 16..171 | 33..182 | 472 | 62.8 | Plus |