Clone BS17509 Report

Search the DGRC for BS17509

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG42299-RA
Protein status:BS17509.pep: full length peptide match
Sequenced Size:581

Clone Sequence Records

BS17509.complete Sequence

581 bp assembled on 2010-02-09

GenBank Submission: KX805288

> BS17509.complete
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACTAAAAGCTTTCTAGACCAT

BS17509.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 549 CG42299-PA 1..549 17..565 2745 100 Plus
CG42300-RA 546 CG42300-PA 1..546 17..565 2590 98.5 Plus
cerv-RD 693 CG15645-PD 203..672 111..562 890 79.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 679 CG42299-RA 21..569 17..565 2745 100 Plus
CG42300-RA 726 CG42300-RA 71..616 17..565 2590 98.5 Plus
cerv-RD 1141 CG15645-RD 485..954 111..562 890 79.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15575057..15575552 565..70 2480 100 Minus
X 23542271 X 15555363..15555855 565..70 2340 98.6 Minus
X 23542271 X 15577173..15577642 562..111 890 79.8 Minus
3L 28110227 3L 17479760..17480054 268..562 605 80.3 Plus
X 23542271 X 15575609..15575663 71..17 275 100 Minus
3L 28110227 3L 17479577..17479712 112..247 275 80.1 Plus
X 23542271 X 15555921..15555975 71..17 260 98.2 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:55 has no hits.

BS17509.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:22 Download gff for BS17509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:11 Download gff for BS17509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..567 17..563 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:29 Download gff for BS17509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..567 17..563 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:22 Download gff for BS17509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..569 17..565 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:41 Download gff for BS17509.complete
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..567 17..563 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:41 Download gff for BS17509.complete
Subject Subject Range Query Range Percent Splice Strand
X 15575059..15575550 72..563 100 <- Minus
X 15575609..15575663 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:29 Download gff for BS17509.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15469092..15469583 72..563 100 <- Minus
arm_X 15469642..15469696 17..71 100   Minus

BS17509.3prime Sequence

579 bp (579 high quality bases) assembled on 2007-05-15

> BS17509.3prime
ATGGTCTAGAAAGCTTTTAGTCCTCATCCGAGGAAGTTTCATTCTTGATC
TTGTCGGACTTGCGCTTTTGCAACTCCTGCTCCACGTCGGGGTCCTTGAC
CAGGTGCTCTAACTTGATGTCGGACAAGTTGGGACAGTCGCGCACCGGGC
ATAGGATGCCAATGTTGTCCTTGATGATCATTAAAACCGTTTCGCGGTCG
TAGATATGACCGCACCTTTTGTTGCGCACGGGGTGCTTTATCAGGAGCTT
GGACCAGGGATCGTGGAACGGGACGACCTCGACGCCGAAGTCTTCCATGA
TAAGGTCCTCATCAAGGCCGGCGATATTCTTTTGAGCTTCTGATTCCACC
GCATTCATGTAGTTCGTGTCCTCAAGTGAGTTATTGACATCGATGCGCAT
CTGCTCCACAGCTTCGGGGCGCTCCTTGCAGACTTCCTCGGACTTCTCGA
TGGTGTTGCTAGAGTTTTTGGTTAGCAACTTCTCCCCGTCATCGCTGGAA
TTGGACACGACTTCTGCCATTTCCCTGAAGAGCTTTTGGTGGGATTTCGG
GTCCATTTTGATCATGTCGACTGATAACT

BS17509.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG32584-PB 549 CG32584-RB 1..549 565..17 2745 100 Minus
CG32584-PA 366 CG32584-RA 1..311 565..255 1555 100 Minus
CG15645-PB 534 CG15645-RB 44..138 471..377 325 93.6 Minus
CG15645-PA 693 CG15645-RA 203..297 471..377 325 93.6 Minus
CG13732-PA 702 CG13732-RA 399..521 314..192 290 89.4 Minus
CG32584-PA 366 CG32584-RA 311..366 236..181 255 98.2 Minus
CG15645-PB 534 CG15645-RB 290..341 243..192 160 92.3 Minus
CG15645-PA 693 CG15645-RA 449..500 243..192 160 92.3 Minus
CG13732-PA 702 CG13732-RA 216..302 470..384 160 87.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 679 CG42299-RA 21..569 565..17 2745 100 Minus
CG42300-RA 726 CG42300-RA 71..616 565..17 2615 98.5 Minus
cerv-RD 1141 CG15645-RD 485..954 471..20 920 80.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15575057..15575552 17..512 2480 100 Plus
X 23542271 X 15555363..15555855 17..512 2340 98.6 Plus
X 23542271 X 15577173..15577642 20..471 890 79.8 Plus
3L 28110227 3L 17479760..17480054 314..20 605 80.3 Minus
X 23542271 X 15575609..15575663 511..565 275 100 Plus
3L 28110227 3L 17479577..17479712 470..335 275 80.1 Minus
X 23542271 X 15555921..15555975 511..565 260 98.2 Plus
Blast to na_te.dros performed on 2015-02-11 02:42:47 has no hits.

BS17509.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:47 Download gff for BS17509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32584-PB 1..549 17..565 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:27 Download gff for BS17509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..569 17..565 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:19:45 Download gff for BS17509.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..569 17..565 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:19:45 Download gff for BS17509.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15575051..15575550 14..510 99 <- Plus
X 15575609..15575663 511..565 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:27 Download gff for BS17509.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15469084..15469583 14..510 99 <- Plus
arm_X 15469642..15469696 511..565 100   Plus

BS17509.5prime Sequence

579 bp (579 high quality bases) assembled on 2007-05-15

> BS17509.5prime
GAAGTTATCAGTCGACATGATCAAAATGGACCCGAAATCCCACCAAAAGC
TCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGAG
AAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGT
CTGCAAGGAGCGCCCCGAAGCTGTGGAGCAGATGCGCATCGATGTCAATA
ACTCACTTGAGGACACGAACTACATGAATGCGGTGGAATCAGAAGCTCAA
AAGAATATCGCCGGCCTTGATGAGGACCTTATCATGGAAGACTTCGGCGT
CGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCCTGATAAAGCACC
CCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTTTA
ATGATCATCAAGGACAACATTGGCATCCTATGCCCGGTGCGCGACTGTCC
CAACTTGTCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGG
AGCAGGAGTTGCAAAAGCGCAAGTCCGACAAGATCAAGAATGAAACTTCC
TCGGATGAGGACTAAAAGCTTTCTAGACC

BS17509.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG32584-PB 549 CG32584-RB 1..549 17..565 2745 100 Plus
CG32584-PA 366 CG32584-RA 1..311 17..327 1555 100 Plus
CG15645-PB 534 CG15645-RB 44..138 111..205 325 93.6 Plus
CG15645-PA 693 CG15645-RA 203..297 111..205 325 93.6 Plus
CG13732-PA 702 CG13732-RA 399..521 268..390 290 89.4 Plus
CG32584-PA 366 CG32584-RA 311..366 346..401 255 98.2 Plus
CG15645-PB 534 CG15645-RB 290..341 339..390 160 92.3 Plus
CG15645-PA 693 CG15645-RA 449..500 339..390 160 92.3 Plus
CG13732-PA 702 CG13732-RA 216..302 112..198 160 87.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:26:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-RA 679 CG42299-RA 21..569 17..565 2745 100 Plus
CG42300-RA 726 CG42300-RA 71..616 17..565 2615 98.5 Plus
cerv-RD 1141 CG15645-RD 485..954 111..562 920 80.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:26:34
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15575057..15575552 565..70 2480 100 Minus
X 23542271 X 15555363..15555855 565..70 2340 98.6 Minus
X 23542271 X 15577173..15577642 562..111 890 79.8 Minus
3L 28110227 3L 17479760..17480054 268..562 605 80.3 Plus
X 23542271 X 15575609..15575663 71..17 275 100 Minus
3L 28110227 3L 17479577..17479712 112..247 275 80.1 Plus
X 23542271 X 15555921..15555975 71..17 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-13 15:26:36 has no hits.

BS17509.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:49 Download gff for BS17509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32584-PB 1..549 17..565 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:39 Download gff for BS17509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..569 17..565 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:47:12 Download gff for BS17509.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42299-RA 21..569 17..565 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:47:12 Download gff for BS17509.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15575051..15575550 72..568 99 <- Minus
X 15575609..15575663 17..71 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:39 Download gff for BS17509.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15469084..15469583 72..568 99 <- Minus
arm_X 15469642..15469696 17..71 100   Minus

BS17509.pep Sequence

Translation from 16 to 564

> BS17509.pep
MIKMDPKSHQKLFREMAEVVSNSSDDGEKLLTKNSSNTIEKSEEVCKERP
EAVEQMRIDVNNSLEDTNYMNAVESEAQKNIAGLDEDLIMEDFGVEVVPF
HDPWSKLLIKHPVRNKRCGHIYDRETVLMIIKDNIGILCPVRDCPNLSDI
KLEHLVKDPDVEQELQKRKSDKIKNETSSDED*

BS17509.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG42299-PA 182 CG32584-PA 1..182 1..182 945 100 Plus
CG42300-PA 181 CG42300-PA 1..181 1..182 919 98.4 Plus
cerv-PD 230 CG15645-PD 17..224 9..182 496 54.8 Plus
cerv-PA 230 CG15645-PA 17..224 9..182 496 54.8 Plus
cerv-PC 177 CG15645-PC 16..171 33..182 472 62.8 Plus