Clone Sequence Records
BS17512.3prime Sequence
458 bp (458 high quality bases) assembled on 2007-05-15
> BS17512.3prime
ATGGTCTAGAAAGCTTCTAGGGCTCCATTCCACCAGATTCGGCATCGATC
TTGTGATCGGTATAGATGGGTTGCAATATCTCACGGGCAGCTTCGTGATC
AGCTTTTCCCAGGGCCTGTGATCTTCCATACAGCTTGATGTACTTCTTTT
CCTTGTCGTGAACCAAGTAACCACCTCCAAGACCCTGGGTGCACAAGCCC
ATCGACTCAGCCTCCTTTTTCAACTCATCGTATACATCAAGATGGTACTT
GGCCTTGGAAAGGCTACGAATCACCTGCTTGGCGCTACCCATTTCCCCAT
GGATATAAACGTGGGCCATCATGTACTTTGATTTTCCACTTTCCACCTTG
GCAACAGGAAAAGCGACTAGACTTCGCATTGGCTTCTCACAATAAAGTCG
AGCCGCTTGCATCATTGGCCGCCAAACGGGTTTAAGAAATTTTCCAGCAA
ACTCCATG
BS17512.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-PA | 441 | CG18662-RA | 1..441 | 457..17 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 646 | CG18662-RA | 73..517 | 458..14 | 2225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8981077..8981303 | 240..14 | 1135 | 100 | Minus |
2L | 23513712 | 2L | 8980853..8981023 | 407..237 | 840 | 99.4 | Minus |
2L | 23513712 | 2L | 8980731..8980783 | 458..406 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:56:13 has no hits.
BS17512.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:59 Download gff for
BS17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-PA | 1..441 | 17..457 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:28 Download gff for
BS17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 73..525 | 7..458 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:13 Download gff for
BS17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 73..525 | 7..458 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:13 Download gff for
BS17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8980855..8981019 | 241..405 | 100 | -> | Minus |
2L | 8981077..8981311 | 7..240 | 98 | | Minus |
2L | 8980731..8980783 | 406..458 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:28 Download gff for
BS17512.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8980855..8981019 | 241..405 | 100 | -> | Minus |
arm_2L | 8980731..8980783 | 406..458 | 100 | -> | Minus |
arm_2L | 8981077..8981311 | 7..240 | 98 | | Minus |
BS17512.5prime Sequence
555 bp (555 high quality bases) assembled on 2007-05-15
> BS17512.5prime
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCTAGAAGCTTTCT
AGACC
BS17512.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-PA | 441 | CG18662-RA | 1..441 | 101..541 | 2205 | 100 | Plus |
CG7052-PE | 4167 | TepII-RE | 3079..3107 | 45..17 | 145 | 100 | Minus |
CG7052-PC | 4194 | TepII-RC | 3106..3134 | 45..17 | 145 | 100 | Minus |
CG7052-PB | 4200 | TepII-RB | 3112..3140 | 45..17 | 145 | 100 | Minus |
CG7052-PD | 4227 | TepII-RD | 3139..3167 | 45..17 | 145 | 100 | Minus |
CG7052-PA | 4263 | TepII-RA | 3175..3203 | 45..17 | 145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 646 | CG18662-RA | 18..517 | 44..544 | 2480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8981077..8981303 | 318..544 | 1135 | 100 | Plus |
2L | 23513712 | 2L | 8980853..8981023 | 151..321 | 840 | 99.4 | Plus |
2L | 23513712 | 2L | 8980676..8980783 | 44..152 | 495 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-04 21:13:50 has no hits.
BS17512.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:51 Download gff for
BS17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-PA | 1..441 | 101..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:47 Download gff for
BS17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..525 | 33..551 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:56:10 Download gff for
BS17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..525 | 33..551 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:56:10 Download gff for
BS17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
2L | 8981077..8981311 | 318..551 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:47 Download gff for
BS17512.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
arm_2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
arm_2L | 8981077..8981311 | 318..551 | 98 | | Plus |
BS17512.complete Sequence
557 bp assembled on 2012-04-25
GenBank Submission: KX802283
> BS17512.complete
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCTAGAAGCTTTCT
AGACCAT
BS17512.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 441 | CG18662-PA | 1..441 | 101..541 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-RA | 646 | CG18662-RA | 18..517 | 44..544 | 2455 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8981077..8981303 | 318..544 | 1135 | 100 | Plus |
2L | 23513712 | 2L | 8980853..8981023 | 151..321 | 840 | 99.4 | Plus |
2L | 23513712 | 2L | 8980676..8980783 | 44..152 | 495 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:13:27 has no hits.
BS17512.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:37 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 1..441 | 101..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:11 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 1..504 | 48..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:38 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 1..493 | 48..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:10 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..514 | 33..541 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:37 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 1..504 | 48..551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:54 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18662-RA | 9..514 | 33..541 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:54 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
2L | 8981077..8981300 | 318..541 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:10 Download gff for
BS17512.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8980667..8980783 | 33..152 | 95 | -> | Plus |
arm_2L | 8980855..8981019 | 153..317 | 100 | -> | Plus |
arm_2L | 8981077..8981300 | 318..541 | 100 | | Plus |
BS17512.pep Sequence
Translation from 16 to 540
> BS17512.pep
MALWYFGISSTASTQIKRKKAKIFFFFDMEFAGKFLKPVWRPMMQAARLY
CEKPMRSLVAFPVAKVESGKSKYMMAHVYIHGEMGSAKQVIRSLSKAKYH
LDVYDELKKEAESMGLCTQGLGGGYLVHDKEKKYIKLYGRSQALGKADHE
AAREILQPIYTDHKIDAESGGMEP*
BS17512.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18662-PA | 146 | CG18662-PA | 1..146 | 29..174 | 765 | 100 | Plus |
janB-PA | 140 | CG7931-PA | 27..136 | 57..165 | 198 | 36.9 | Plus |
janA-PB | 135 | CG7933-PB | 7..134 | 43..171 | 191 | 32.3 | Plus |
janA-PA | 119 | CG7933-PA | 5..118 | 57..171 | 188 | 34.5 | Plus |
janA-PC | 119 | CG7933-PC | 5..118 | 57..171 | 188 | 34.5 | Plus |