Clone BS17512 Report

Search the DGRC for BS17512

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG18662-RA
Protein status:BS17512.pep: gold
Sequenced Size:557

Clone Sequence Records

BS17512.3prime Sequence

458 bp (458 high quality bases) assembled on 2007-05-15

> BS17512.3prime
ATGGTCTAGAAAGCTTCTAGGGCTCCATTCCACCAGATTCGGCATCGATC
TTGTGATCGGTATAGATGGGTTGCAATATCTCACGGGCAGCTTCGTGATC
AGCTTTTCCCAGGGCCTGTGATCTTCCATACAGCTTGATGTACTTCTTTT
CCTTGTCGTGAACCAAGTAACCACCTCCAAGACCCTGGGTGCACAAGCCC
ATCGACTCAGCCTCCTTTTTCAACTCATCGTATACATCAAGATGGTACTT
GGCCTTGGAAAGGCTACGAATCACCTGCTTGGCGCTACCCATTTCCCCAT
GGATATAAACGTGGGCCATCATGTACTTTGATTTTCCACTTTCCACCTTG
GCAACAGGAAAAGCGACTAGACTTCGCATTGGCTTCTCACAATAAAGTCG
AGCCGCTTGCATCATTGGCCGCCAAACGGGTTTAAGAAATTTTCCAGCAA
ACTCCATG

BS17512.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-PA 441 CG18662-RA 1..441 457..17 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 646 CG18662-RA 73..517 458..14 2225 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8981077..8981303 240..14 1135 100 Minus
2L 23513712 2L 8980853..8981023 407..237 840 99.4 Minus
2L 23513712 2L 8980731..8980783 458..406 265 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:56:13 has no hits.

BS17512.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:59 Download gff for BS17512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-PA 1..441 17..457 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:28 Download gff for BS17512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 73..525 7..458 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:13 Download gff for BS17512.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 73..525 7..458 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:13 Download gff for BS17512.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8980855..8981019 241..405 100 -> Minus
2L 8981077..8981311 7..240 98   Minus
2L 8980731..8980783 406..458 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:28 Download gff for BS17512.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8980855..8981019 241..405 100 -> Minus
arm_2L 8980731..8980783 406..458 100 -> Minus
arm_2L 8981077..8981311 7..240 98   Minus

BS17512.5prime Sequence

555 bp (555 high quality bases) assembled on 2007-05-15

> BS17512.5prime
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCTAGAAGCTTTCT
AGACC

BS17512.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-PA 441 CG18662-RA 1..441 101..541 2205 100 Plus
CG7052-PE 4167 TepII-RE 3079..3107 45..17 145 100 Minus
CG7052-PC 4194 TepII-RC 3106..3134 45..17 145 100 Minus
CG7052-PB 4200 TepII-RB 3112..3140 45..17 145 100 Minus
CG7052-PD 4227 TepII-RD 3139..3167 45..17 145 100 Minus
CG7052-PA 4263 TepII-RA 3175..3203 45..17 145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 646 CG18662-RA 18..517 44..544 2480 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8981077..8981303 318..544 1135 100 Plus
2L 23513712 2L 8980853..8981023 151..321 840 99.4 Plus
2L 23513712 2L 8980676..8980783 44..152 495 99.1 Plus
Blast to na_te.dros performed on 2015-02-04 21:13:50 has no hits.

BS17512.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:51 Download gff for BS17512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-PA 1..441 101..541 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:47 Download gff for BS17512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..525 33..551 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:56:10 Download gff for BS17512.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..525 33..551 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:56:10 Download gff for BS17512.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8980667..8980783 33..152 95 -> Plus
2L 8980855..8981019 153..317 100 -> Plus
2L 8981077..8981311 318..551 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:47 Download gff for BS17512.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8980667..8980783 33..152 95 -> Plus
arm_2L 8980855..8981019 153..317 100 -> Plus
arm_2L 8981077..8981311 318..551 98   Plus

BS17512.complete Sequence

557 bp assembled on 2012-04-25

GenBank Submission: KX802283

> BS17512.complete
GAAGTTATCAGTCGACATGGCACTTTGGTACTTCGGGATCAGTTCGACAG
CTAGTACACAAATAAAAAGAAAAAAAGCAAAAATATTTTTTTTTTTTGAC
ATGGAGTTTGCTGGAAAATTTCTTAAACCCGTTTGGCGGCCAATGATGCA
AGCGGCTCGACTTTATTGTGAGAAGCCAATGCGAAGTCTAGTCGCTTTTC
CTGTTGCCAAGGTGGAAAGTGGAAAATCAAAGTACATGATGGCCCACGTT
TATATCCATGGGGAAATGGGTAGCGCCAAGCAGGTGATTCGTAGCCTTTC
CAAGGCCAAGTACCATCTTGATGTATACGATGAGTTGAAAAAGGAGGCTG
AGTCGATGGGCTTGTGCACCCAGGGTCTTGGAGGTGGTTACTTGGTTCAC
GACAAGGAAAAGAAGTACATCAAGCTGTATGGAAGATCACAGGCCCTGGG
AAAAGCTGATCACGAAGCTGCCCGTGAGATATTGCAACCCATCTATACCG
ATCACAAGATCGATGCCGAATCTGGTGGAATGGAGCCCTAGAAGCTTTCT
AGACCAT

BS17512.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 441 CG18662-PA 1..441 101..541 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-RA 646 CG18662-RA 18..517 44..544 2455 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:13:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8981077..8981303 318..544 1135 100 Plus
2L 23513712 2L 8980853..8981023 151..321 840 99.4 Plus
2L 23513712 2L 8980676..8980783 44..152 495 99.1 Plus
Blast to na_te.dros performed on 2014-11-28 12:13:27 has no hits.

BS17512.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:19:37 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 1..441 101..541 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:51:11 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 1..504 48..551 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:38 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 1..493 48..541 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:10 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..514 33..541 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:19:37 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 1..504 48..551 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:54 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
CG18662-RA 9..514 33..541 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:54 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8980667..8980783 33..152 95 -> Plus
2L 8980855..8981019 153..317 100 -> Plus
2L 8981077..8981300 318..541 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:10 Download gff for BS17512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8980667..8980783 33..152 95 -> Plus
arm_2L 8980855..8981019 153..317 100 -> Plus
arm_2L 8981077..8981300 318..541 100   Plus

BS17512.pep Sequence

Translation from 16 to 540

> BS17512.pep
MALWYFGISSTASTQIKRKKAKIFFFFDMEFAGKFLKPVWRPMMQAARLY
CEKPMRSLVAFPVAKVESGKSKYMMAHVYIHGEMGSAKQVIRSLSKAKYH
LDVYDELKKEAESMGLCTQGLGGGYLVHDKEKKYIKLYGRSQALGKADHE
AAREILQPIYTDHKIDAESGGMEP*

BS17512.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG18662-PA 146 CG18662-PA 1..146 29..174 765 100 Plus
janB-PA 140 CG7931-PA 27..136 57..165 198 36.9 Plus
janA-PB 135 CG7933-PB 7..134 43..171 191 32.3 Plus
janA-PA 119 CG7933-PA 5..118 57..171 188 34.5 Plus
janA-PC 119 CG7933-PC 5..118 57..171 188 34.5 Plus