Clone Sequence Records
BS17513.3prime Sequence
576 bp (576 high quality bases) assembled on 2007-05-15
> BS17513.3prime
ATGGTCTAGAAAGCTTTTATGCTAACTCAAACCCATGGTCAACAATGTGT
TCTGCATCCCAAAACGTTGTCGGTCGCTTGGGAACATTGGACGCCATCTC
TCGCAAAATGTTTCCAGGAGGAGCATATCTCACCACTAGGTATCGCGTTT
CCTGTATTCTGCCTAGTCCAACGCCAAGTCTGGTGGAGGCGTTCCATATC
ATGGCCGTAAACCTGTAATACTTTGTGTTCTCGGCGAAGCCTCGGTAATG
AAACCAAATTCGAACACATTCCCTAGGCAAGGCCTCCCGGAAAACGCAGA
CGACTTGAAGGTGCTTTGCTGATATTGGGTCCGTTGCATACAGGTATTCC
AAGTAGTTCTCTGTATATACACCTTCATTCCTGACTATTTCATCTGCGTA
TTCTGAGCACTCTGTACAGAGTTCTTCGTCCAGAACCATGGGCTGATTAC
CGTACTTGGCCCTCCTTCGATTGTGAGCCTCCAGGATTAAGGAGCGAAGA
CCTATGCCGATTGTCTGGTTGCACTCGATGGCGATTAAAAACAAAATAAT
TTTTATGCTCATGTCGACTGATAACT
BS17513.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-PA | 546 | CG32313-RA | 1..546 | 562..17 | 2705 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 732 | CG32313-RA | 50..595 | 562..17 | 2715 | 99.8 | Minus |
CG32313-RB | 735 | CG32313-RB | 50..598 | 562..17 | 2675 | 99.3 | Minus |
CG32313-RC | 752 | CG32313-RC | 50..615 | 562..17 | 2495 | 96.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1545170..1545405 | 156..391 | 1180 | 100 | Plus |
3L | 28110227 | 3L | 1544965..1545103 | 17..155 | 680 | 99.3 | Plus |
3L | 28110227 | 3L | 1545473..1545607 | 391..525 | 675 | 100 | Plus |
3L | 28110227 | 3L | 1545656..1545694 | 524..562 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:07:17 has no hits.
BS17513.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:51 Download gff for
BS17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-PA | 1..546 | 17..562 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:54 Download gff for
BS17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..600 | 10..573 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:29 Download gff for
BS17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..600 | 10..573 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:29 Download gff for
BS17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1544960..1545103 | 10..155 | 97 | <- | Plus |
3L | 1545170..1545405 | 156..391 | 100 | <- | Plus |
3L | 1545474..1545605 | 392..523 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:54 Download gff for
BS17513.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1544960..1545103 | 10..155 | 97 | <- | Plus |
arm_3L | 1545170..1545405 | 156..391 | 100 | <- | Plus |
arm_3L | 1545474..1545605 | 392..523 | 100 | <- | Plus |
BS17513.5prime Sequence
576 bp (576 high quality bases) assembled on 2007-05-15
> BS17513.5prime
GAAGTTATCACTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATGCAGAACACATTGTTGACCATGGGTTT
GAGTTCGCATAAAAGCTTTCTAGACC
BS17513.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-PA | 546 | CG32313-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 732 | CG32313-RA | 50..595 | 17..562 | 2730 | 100 | Plus |
CG32313-RB | 735 | CG32313-RB | 50..598 | 17..562 | 2690 | 99.5 | Plus |
CG32313-RC | 752 | CG32313-RC | 50..615 | 17..562 | 2510 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1545170..1545405 | 423..188 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 1544965..1545103 | 562..424 | 695 | 100 | Minus |
3L | 28110227 | 3L | 1545473..1545607 | 188..54 | 675 | 100 | Minus |
3L | 28110227 | 3L | 1545656..1545694 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:12:10 has no hits.
BS17513.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:54 Download gff for
BS17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-PA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:22 Download gff for
BS17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 44..600 | 9..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:48 Download gff for
BS17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 44..600 | 9..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:48 Download gff for
BS17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1544960..1545103 | 424..569 | 97 | <- | Minus |
3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
3L | 1545656..1545700 | 9..55 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:22 Download gff for
BS17513.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1544960..1545103 | 424..569 | 97 | <- | Minus |
arm_3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
arm_3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
arm_3L | 1545656..1545700 | 9..55 | 91 | | Minus |
BS17513.complete Sequence
578 bp assembled on 2007-06-21
GenBank Submission: KX802150
> BS17513.complete
GAAGTTATCAGTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATGCAGAACACATTGTTGACCATGGGTTT
GAGTTCGCATAAAAGCTTTCTAGACCAT
BS17513.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 546 | CG32313-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
CG32313-RB | 549 | CG32313-PB | 1..549 | 17..562 | 2665 | 99.5 | Plus |
CG32313-RC | 198 | CG32313-PC | 1..174 | 17..187 | 790 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-RA | 732 | CG32313-RA | 50..595 | 17..562 | 2730 | 100 | Plus |
CG32313-RB | 735 | CG32313-RB | 50..598 | 17..562 | 2665 | 99.5 | Plus |
CG32313-RC | 752 | CG32313-RC | 50..615 | 17..562 | 2460 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1545170..1545405 | 423..188 | 1180 | 100 | Minus |
3L | 28110227 | 3L | 1544965..1545103 | 562..424 | 695 | 100 | Minus |
3L | 28110227 | 3L | 1545473..1545607 | 188..54 | 675 | 100 | Minus |
3L | 28110227 | 3L | 1545656..1545694 | 55..17 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:03 has no hits.
BS17513.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:24 Download gff for
BS17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 1..546 | 17..562 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:06 Download gff for
BS17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..600 | 6..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:22 Download gff for
BS17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 50..593 | 17..560 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:24 Download gff for
BS17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 41..600 | 6..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:40 Download gff for
BS17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32313-RA | 50..593 | 17..560 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:40 Download gff for
BS17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1544967..1545103 | 424..560 | 100 | <- | Minus |
3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
3L | 1545656..1545694 | 17..55 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:22 Download gff for
BS17513.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1544967..1545103 | 424..560 | 100 | <- | Minus |
arm_3L | 1545170..1545405 | 188..423 | 100 | <- | Minus |
arm_3L | 1545474..1545605 | 56..187 | 100 | <- | Minus |
arm_3L | 1545656..1545694 | 17..55 | 100 | | Minus |
BS17513.pep Sequence
Translation from 16 to 561
> BS17513.pep
MSIKIILFLIAIECNQTIGIGLRSLILEAHNRRRAKYGNQPMVLDEELCT
ECSEYADEIVRNEGVYTENYLEYLYATDPISAKHLQVVCVFREALPRECV
RIWFHYRGFAENTKYYRFTAMIWNASTRLGVGLGRIQETRYLVVRYAPPG
NILREMASNVPKRPTTFWDAEHIVDHGFEFA*
BS17513.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32313-PA | 181 | CG32313-PA | 1..181 | 1..181 | 964 | 100 | Plus |
CG32313-PB | 182 | CG32313-PB | 1..182 | 1..181 | 952 | 99.5 | Plus |
CG32313-PC | 65 | CG32313-PC | 1..58 | 1..57 | 280 | 98.3 | Plus |
CG31286-PB | 205 | CG31286-PB | 8..164 | 5..163 | 187 | 34.7 | Plus |
CG31482-PA | 195 | CG31482-PA | 6..157 | 6..160 | 166 | 29.9 | Plus |