Clone BS17513 Report

Search the DGRC for BS17513

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG32313-RA
Protein status:BS17513.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17513.3prime Sequence

576 bp (576 high quality bases) assembled on 2007-05-15

> BS17513.3prime
ATGGTCTAGAAAGCTTTTATGCTAACTCAAACCCATGGTCAACAATGTGT
TCTGCATCCCAAAACGTTGTCGGTCGCTTGGGAACATTGGACGCCATCTC
TCGCAAAATGTTTCCAGGAGGAGCATATCTCACCACTAGGTATCGCGTTT
CCTGTATTCTGCCTAGTCCAACGCCAAGTCTGGTGGAGGCGTTCCATATC
ATGGCCGTAAACCTGTAATACTTTGTGTTCTCGGCGAAGCCTCGGTAATG
AAACCAAATTCGAACACATTCCCTAGGCAAGGCCTCCCGGAAAACGCAGA
CGACTTGAAGGTGCTTTGCTGATATTGGGTCCGTTGCATACAGGTATTCC
AAGTAGTTCTCTGTATATACACCTTCATTCCTGACTATTTCATCTGCGTA
TTCTGAGCACTCTGTACAGAGTTCTTCGTCCAGAACCATGGGCTGATTAC
CGTACTTGGCCCTCCTTCGATTGTGAGCCTCCAGGATTAAGGAGCGAAGA
CCTATGCCGATTGTCTGGTTGCACTCGATGGCGATTAAAAACAAAATAAT
TTTTATGCTCATGTCGACTGATAACT

BS17513.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-PA 546 CG32313-RA 1..546 562..17 2705 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 732 CG32313-RA 50..595 562..17 2715 99.8 Minus
CG32313-RB 735 CG32313-RB 50..598 562..17 2675 99.3 Minus
CG32313-RC 752 CG32313-RC 50..615 562..17 2495 96.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1545170..1545405 156..391 1180 100 Plus
3L 28110227 3L 1544965..1545103 17..155 680 99.3 Plus
3L 28110227 3L 1545473..1545607 391..525 675 100 Plus
3L 28110227 3L 1545656..1545694 524..562 195 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:07:17 has no hits.

BS17513.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:51 Download gff for BS17513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-PA 1..546 17..562 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:54 Download gff for BS17513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..600 10..573 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:54:29 Download gff for BS17513.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..600 10..573 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:54:29 Download gff for BS17513.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1544960..1545103 10..155 97 <- Plus
3L 1545170..1545405 156..391 100 <- Plus
3L 1545474..1545605 392..523 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:54 Download gff for BS17513.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1544960..1545103 10..155 97 <- Plus
arm_3L 1545170..1545405 156..391 100 <- Plus
arm_3L 1545474..1545605 392..523 100 <- Plus

BS17513.5prime Sequence

576 bp (576 high quality bases) assembled on 2007-05-15

> BS17513.5prime
GAAGTTATCACTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATGCAGAACACATTGTTGACCATGGGTTT
GAGTTCGCATAAAAGCTTTCTAGACC

BS17513.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-PA 546 CG32313-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 732 CG32313-RA 50..595 17..562 2730 100 Plus
CG32313-RB 735 CG32313-RB 50..598 17..562 2690 99.5 Plus
CG32313-RC 752 CG32313-RC 50..615 17..562 2510 96.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1545170..1545405 423..188 1180 100 Minus
3L 28110227 3L 1544965..1545103 562..424 695 100 Minus
3L 28110227 3L 1545473..1545607 188..54 675 100 Minus
3L 28110227 3L 1545656..1545694 55..17 195 100 Minus
Blast to na_te.dros performed on 2015-02-04 21:12:10 has no hits.

BS17513.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:54 Download gff for BS17513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-PA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:22 Download gff for BS17513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 44..600 9..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:48 Download gff for BS17513.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 44..600 9..569 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:48 Download gff for BS17513.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1544960..1545103 424..569 97 <- Minus
3L 1545170..1545405 188..423 100 <- Minus
3L 1545474..1545605 56..187 100 <- Minus
3L 1545656..1545700 9..55 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:22 Download gff for BS17513.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1544960..1545103 424..569 97 <- Minus
arm_3L 1545170..1545405 188..423 100 <- Minus
arm_3L 1545474..1545605 56..187 100 <- Minus
arm_3L 1545656..1545700 9..55 91   Minus

BS17513.complete Sequence

578 bp assembled on 2007-06-21

GenBank Submission: KX802150

> BS17513.complete
GAAGTTATCAGTCGACATGAGCATAAAAATTATTTTGTTTTTAATCGCCA
TCGAGTGCAACCAGACAATCGGCATAGGTCTTCGCTCCTTAATCCTGGAG
GCTCACAATCGAAGGAGGGCCAAGTACGGTAATCAGCCCATGGTTCTGGA
CGAAGAACTCTGTACAGAGTGCTCAGAATACGCAGATGAAATAGTCAGGA
ATGAAGGTGTATATACAGAGAACTACTTGGAATACCTGTATGCAACGGAC
CCAATATCAGCAAAGCACCTTCAAGTCGTCTGCGTTTTCCGGGAGGCCTT
GCCTAGGGAATGTGTTCGAATTTGGTTTCATTACCGAGGCTTCGCCGAGA
ACACAAAGTATTACAGGTTTACGGCCATGATATGGAACGCCTCCACCAGA
CTTGGCGTTGGACTAGGCAGAATACAGGAAACGCGATACCTAGTGGTGAG
ATATGCTCCTCCTGGAAACATTTTGCGAGAGATGGCGTCCAATGTTCCCA
AGCGACCGACAACGTTTTGGGATGCAGAACACATTGTTGACCATGGGTTT
GAGTTCGCATAAAAGCTTTCTAGACCAT

BS17513.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 546 CG32313-PA 1..546 17..562 2730 100 Plus
CG32313-RB 549 CG32313-PB 1..549 17..562 2665 99.5 Plus
CG32313-RC 198 CG32313-PC 1..174 17..187 790 98.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-RA 732 CG32313-RA 50..595 17..562 2730 100 Plus
CG32313-RB 735 CG32313-RB 50..598 17..562 2665 99.5 Plus
CG32313-RC 752 CG32313-RC 50..615 17..562 2460 96.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1545170..1545405 423..188 1180 100 Minus
3L 28110227 3L 1544965..1545103 562..424 695 100 Minus
3L 28110227 3L 1545473..1545607 188..54 675 100 Minus
3L 28110227 3L 1545656..1545694 55..17 195 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:29:03 has no hits.

BS17513.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:24 Download gff for BS17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 1..546 17..562 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:52:06 Download gff for BS17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..600 6..569 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:22 Download gff for BS17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 50..593 17..560 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:24 Download gff for BS17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 41..600 6..569 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:40 Download gff for BS17513.complete
Subject Subject Range Query Range Percent Splice Strand
CG32313-RA 50..593 17..560 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:40 Download gff for BS17513.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1544967..1545103 424..560 100 <- Minus
3L 1545170..1545405 188..423 100 <- Minus
3L 1545474..1545605 56..187 100 <- Minus
3L 1545656..1545694 17..55 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:22 Download gff for BS17513.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1544967..1545103 424..560 100 <- Minus
arm_3L 1545170..1545405 188..423 100 <- Minus
arm_3L 1545474..1545605 56..187 100 <- Minus
arm_3L 1545656..1545694 17..55 100   Minus

BS17513.pep Sequence

Translation from 16 to 561

> BS17513.pep
MSIKIILFLIAIECNQTIGIGLRSLILEAHNRRRAKYGNQPMVLDEELCT
ECSEYADEIVRNEGVYTENYLEYLYATDPISAKHLQVVCVFREALPRECV
RIWFHYRGFAENTKYYRFTAMIWNASTRLGVGLGRIQETRYLVVRYAPPG
NILREMASNVPKRPTTFWDAEHIVDHGFEFA*

BS17513.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:18:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32313-PA 181 CG32313-PA 1..181 1..181 964 100 Plus
CG32313-PB 182 CG32313-PB 1..182 1..181 952 99.5 Plus
CG32313-PC 65 CG32313-PC 1..58 1..57 280 98.3 Plus
CG31286-PB 205 CG31286-PB 8..164 5..163 187 34.7 Plus
CG31482-PA 195 CG31482-PA 6..157 6..160 166 29.9 Plus