Clone Sequence Records
BS17519.complete Sequence
836 bp assembled on 2010-02-09
GenBank Submission: KX801147
> BS17519.complete
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTGGGAATTGTATCCCACGGATTCGATGGCGAGTGCAAGCTAAAACT
GCCCGACGTATCCACACGCGTTTCTTCCTACCTCAAGTGGATTAAATACT
ACTCTGGAGGACTTAAGTAGAAGCTTTCTAGACCAT
BS17519.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 804 | CG10469-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 1067 | CG10469-RA | 219..1032 | 7..820 | 4025 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6092223..6092790 | 820..253 | 2840 | 100 | Minus |
3L | 28110227 | 3L | 6092850..6093095 | 252..7 | 1185 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:42 has no hits.
BS17519.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:32 Download gff for
BS17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:42 Download gff for
BS17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:34 Download gff for
BS17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 229..1032 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:32 Download gff for
BS17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:10 Download gff for
BS17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 229..1032 | 17..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:10 Download gff for
BS17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6092223..6092790 | 253..820 | 100 | <- | Minus |
3L | 6092850..6093085 | 17..252 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:34 Download gff for
BS17519.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6085323..6085890 | 253..820 | 100 | <- | Minus |
arm_3L | 6085950..6086185 | 17..252 | 100 | | Minus |
BS17519.3prime Sequence
834 bp (770 high quality bases) assembled on 2007-05-15
> BS17519.3prime
ATGGTCTAGAAAGCTTCTACTTAAGTCCTCCAGAGTAGTATTTAATCCAC
TTGAGGTAGGAAGAAACGCGTGTGGATACGTCGGGCAGTTTTAGCTTGCA
CTCGCCATCGAATCCGTGGGATACAATTCCCACCAGGGTTCTGCTGCCAT
CGTCCAAGACCATCGGACCTCCGGAGTCGCCGCGACATGGCAGACCCTTC
TTGGAATCGATGCAGATGAAGCCGTTGTGCACGACCTTTTTGCTTTTGCC
GCCCAGCTGCTTGTTCCACTGCCTCTCGCACTCCTTGTTCGAGATGATGG
GCGCCCTGATGTACTGGAGCACCTGGCTGGGCAGCTGCTTGGTGGTCAGA
CCCCAACCCGAAATGATGGCTTTGCGACCCGTGTATGTTTTCTTGGCACT
GGGCAACTTGGCGGGTTGGATATACTTGTTAAATGTAAGCTTCTTGGGTA
ATTTGATCAGGGCTATATCGTTTGTCACGGTCTTACGGTCGAACTTCTTG
TGGACGATGGTGTAGCTCCGGTTGACCACGATTTCTTTATCATCAAAGGA
TTTCACCTTTCCCACGTGGATCAGCACTTTCCAGAGATTAGACTTTGGAT
CCTGCAGACAATGGGCTGCGGTTATAATCCAACGATTACTGAGGATAGTG
CCCCCGCACATATTGGGCTCATCCTTGGATCCTTCGAAGTAGCAAAGTAG
TCCAACCTGGTAAGGCAACTGCTTCGCTTTTGCCGCTGTGCCATTCATTA
TTCGCAGGGAGCCAGTCTCCTGGCCAAATACCAGGGAGAACTGCACGATA
AGCACCAGCTGGAGAATCATGTCGACTGATAACT
BS17519.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-PA | 804 | CG10469-RA | 1..804 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 1067 | CG10469-RA | 219..1032 | 830..17 | 4025 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6092223..6092790 | 17..584 | 2840 | 100 | Plus |
3L | 28110227 | 3L | 6092850..6093095 | 585..830 | 1185 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:19:01 has no hits.
BS17519.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:55 Download gff for
BS17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:04 Download gff for
BS17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 219..1032 | 17..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:37 Download gff for
BS17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 219..1032 | 17..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:37 Download gff for
BS17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6092223..6092790 | 17..584 | 100 | <- | Plus |
3L | 6092850..6093095 | 585..830 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:04 Download gff for
BS17519.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6085323..6085890 | 17..584 | 100 | <- | Plus |
arm_3L | 6085950..6086195 | 585..830 | 98 | | Plus |
BS17519.5prime Sequence
834 bp (805 high quality bases) assembled on 2007-05-15
> BS17519.5prime
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTGGGAATTGTATCCCACGGATTCGATGGCGAGTGCAAGCTAAAACT
GCCCGACGTATCCACACGCGTTTCTTCCTACCTCAAGTGGATTAAATACT
ACTCTGGAGGACTTAAGTAGAAGCTTTCTAGACC
BS17519.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-PA | 804 | CG10469-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-RA | 1067 | CG10469-RA | 219..1032 | 7..820 | 4025 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6092223..6092790 | 820..253 | 2840 | 100 | Minus |
3L | 28110227 | 3L | 6092850..6093095 | 252..7 | 1185 | 98.8 | Minus |
Blast to na_te.dros performed on 2015-02-04 21:12:25 has no hits.
BS17519.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:58 Download gff for
BS17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-PA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:24 Download gff for
BS17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 219..1032 | 7..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:50 Download gff for
BS17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10469-RA | 219..1032 | 7..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:50 Download gff for
BS17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6092223..6092790 | 253..820 | 100 | <- | Minus |
3L | 6092850..6093095 | 7..252 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:24 Download gff for
BS17519.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6085323..6085890 | 253..820 | 100 | <- | Minus |
arm_3L | 6085950..6086195 | 7..252 | 98 | | Minus |
BS17519.pep Sequence
Translation from 16 to 819
> BS17519.pep
MILQLVLIVQFSLVFGQETGSLRIMNGTAAKAKQLPYQVGLLCYFEGSKD
EPNMCGGTILSNRWIITAAHCLQDPKSNLWKVLIHVGKVKSFDDKEIVVN
RSYTIVHKKFDRKTVTNDIALIKLPKKLTFNKYIQPAKLPSAKKTYTGRK
AIISGWGLTTKQLPSQVLQYIRAPIISNKECERQWNKQLGGKSKKVVHNG
FICIDSKKGLPCRGDSGGPMVLDDGSRTLVGIVSHGFDGECKLKLPDVST
RVSSYLKWIKYYSGGLK*
BS17519.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10469-PA | 267 | CG10469-PA | 1..267 | 1..267 | 1405 | 100 | Plus |
CG10472-PA | 290 | CG10472-PA | 37..284 | 14..264 | 458 | 43.5 | Plus |
CG7542-PB | 270 | CG7542-PB | 27..260 | 24..259 | 360 | 38.2 | Plus |
CG7542-PA | 270 | CG7542-PA | 27..260 | 24..259 | 360 | 38.2 | Plus |
CG11529-PA | 287 | CG11529-PA | 25..256 | 19..260 | 355 | 36.1 | Plus |