Clone BS17519 Report

Search the DGRC for BS17519

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCG10469-RA
Protein status:BS17519.pep: full length peptide match
Sequenced Size:836

Clone Sequence Records

BS17519.complete Sequence

836 bp assembled on 2010-02-09

GenBank Submission: KX801147

> BS17519.complete
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTGGGAATTGTATCCCACGGATTCGATGGCGAGTGCAAGCTAAAACT
GCCCGACGTATCCACACGCGTTTCTTCCTACCTCAAGTGGATTAAATACT
ACTCTGGAGGACTTAAGTAGAAGCTTTCTAGACCAT

BS17519.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 804 CG10469-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 1067 CG10469-RA 219..1032 7..820 4025 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6092223..6092790 820..253 2840 100 Minus
3L 28110227 3L 6092850..6093095 252..7 1185 98.8 Minus
Blast to na_te.dros performed on 2014-11-28 03:04:42 has no hits.

BS17519.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:32 Download gff for BS17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:42 Download gff for BS17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:34 Download gff for BS17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 229..1032 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:32 Download gff for BS17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:10 Download gff for BS17519.complete
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 229..1032 17..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:10 Download gff for BS17519.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6092223..6092790 253..820 100 <- Minus
3L 6092850..6093085 17..252 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:34 Download gff for BS17519.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6085323..6085890 253..820 100 <- Minus
arm_3L 6085950..6086185 17..252 100   Minus

BS17519.3prime Sequence

834 bp (770 high quality bases) assembled on 2007-05-15

> BS17519.3prime
ATGGTCTAGAAAGCTTCTACTTAAGTCCTCCAGAGTAGTATTTAATCCAC
TTGAGGTAGGAAGAAACGCGTGTGGATACGTCGGGCAGTTTTAGCTTGCA
CTCGCCATCGAATCCGTGGGATACAATTCCCACCAGGGTTCTGCTGCCAT
CGTCCAAGACCATCGGACCTCCGGAGTCGCCGCGACATGGCAGACCCTTC
TTGGAATCGATGCAGATGAAGCCGTTGTGCACGACCTTTTTGCTTTTGCC
GCCCAGCTGCTTGTTCCACTGCCTCTCGCACTCCTTGTTCGAGATGATGG
GCGCCCTGATGTACTGGAGCACCTGGCTGGGCAGCTGCTTGGTGGTCAGA
CCCCAACCCGAAATGATGGCTTTGCGACCCGTGTATGTTTTCTTGGCACT
GGGCAACTTGGCGGGTTGGATATACTTGTTAAATGTAAGCTTCTTGGGTA
ATTTGATCAGGGCTATATCGTTTGTCACGGTCTTACGGTCGAACTTCTTG
TGGACGATGGTGTAGCTCCGGTTGACCACGATTTCTTTATCATCAAAGGA
TTTCACCTTTCCCACGTGGATCAGCACTTTCCAGAGATTAGACTTTGGAT
CCTGCAGACAATGGGCTGCGGTTATAATCCAACGATTACTGAGGATAGTG
CCCCCGCACATATTGGGCTCATCCTTGGATCCTTCGAAGTAGCAAAGTAG
TCCAACCTGGTAAGGCAACTGCTTCGCTTTTGCCGCTGTGCCATTCATTA
TTCGCAGGGAGCCAGTCTCCTGGCCAAATACCAGGGAGAACTGCACGATA
AGCACCAGCTGGAGAATCATGTCGACTGATAACT

BS17519.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-PA 804 CG10469-RA 1..804 820..17 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 1067 CG10469-RA 219..1032 830..17 4025 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6092223..6092790 17..584 2840 100 Plus
3L 28110227 3L 6092850..6093095 585..830 1185 98.8 Plus
Blast to na_te.dros performed on 2015-02-10 21:19:01 has no hits.

BS17519.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:55 Download gff for BS17519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:04 Download gff for BS17519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 219..1032 17..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:37 Download gff for BS17519.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 219..1032 17..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:37 Download gff for BS17519.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6092223..6092790 17..584 100 <- Plus
3L 6092850..6093095 585..830 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:04 Download gff for BS17519.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6085323..6085890 17..584 100 <- Plus
arm_3L 6085950..6086195 585..830 98   Plus

BS17519.5prime Sequence

834 bp (805 high quality bases) assembled on 2007-05-15

> BS17519.5prime
GAAGTTATCAGTCGACATGATTCTCCAGCTGGTGCTTATCGTGCAGTTCT
CCCTGGTATTTGGCCAGGAGACTGGCTCCCTGCGAATAATGAATGGCACA
GCGGCAAAAGCGAAGCAGTTGCCTTACCAGGTTGGACTACTTTGCTACTT
CGAAGGATCCAAGGATGAGCCCAATATGTGCGGGGGCACTATCCTCAGTA
ATCGTTGGATTATAACCGCAGCCCATTGTCTGCAGGATCCAAAGTCTAAT
CTCTGGAAAGTGCTGATCCACGTGGGAAAGGTGAAATCCTTTGATGATAA
AGAAATCGTGGTCAACCGGAGCTACACCATCGTCCACAAGAAGTTCGACC
GTAAGACCGTGACAAACGATATAGCCCTGATCAAATTACCCAAGAAGCTT
ACATTTAACAAGTATATCCAACCCGCCAAGTTGCCCAGTGCCAAGAAAAC
ATACACGGGTCGCAAAGCCATCATTTCGGGTTGGGGTCTGACCACCAAGC
AGCTGCCCAGCCAGGTGCTCCAGTACATCAGGGCGCCCATCATCTCGAAC
AAGGAGTGCGAGAGGCAGTGGAACAAGCAGCTGGGCGGCAAAAGCAAAAA
GGTCGTGCACAACGGCTTCATCTGCATCGATTCCAAGAAGGGTCTGCCAT
GTCGCGGCGACTCCGGAGGTCCGATGGTCTTGGACGATGGCAGCAGAACC
CTGGTGGGAATTGTATCCCACGGATTCGATGGCGAGTGCAAGCTAAAACT
GCCCGACGTATCCACACGCGTTTCTTCCTACCTCAAGTGGATTAAATACT
ACTCTGGAGGACTTAAGTAGAAGCTTTCTAGACC

BS17519.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-PA 804 CG10469-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-RA 1067 CG10469-RA 219..1032 7..820 4025 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 21:12:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6092223..6092790 820..253 2840 100 Minus
3L 28110227 3L 6092850..6093095 252..7 1185 98.8 Minus
Blast to na_te.dros performed on 2015-02-04 21:12:25 has no hits.

BS17519.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:41:58 Download gff for BS17519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-PA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:30:24 Download gff for BS17519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 219..1032 7..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:55:50 Download gff for BS17519.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10469-RA 219..1032 7..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:55:50 Download gff for BS17519.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6092223..6092790 253..820 100 <- Minus
3L 6092850..6093095 7..252 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:30:24 Download gff for BS17519.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6085323..6085890 253..820 100 <- Minus
arm_3L 6085950..6086195 7..252 98   Minus

BS17519.pep Sequence

Translation from 16 to 819

> BS17519.pep
MILQLVLIVQFSLVFGQETGSLRIMNGTAAKAKQLPYQVGLLCYFEGSKD
EPNMCGGTILSNRWIITAAHCLQDPKSNLWKVLIHVGKVKSFDDKEIVVN
RSYTIVHKKFDRKTVTNDIALIKLPKKLTFNKYIQPAKLPSAKKTYTGRK
AIISGWGLTTKQLPSQVLQYIRAPIISNKECERQWNKQLGGKSKKVVHNG
FICIDSKKGLPCRGDSGGPMVLDDGSRTLVGIVSHGFDGECKLKLPDVST
RVSSYLKWIKYYSGGLK*

BS17519.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG10469-PA 267 CG10469-PA 1..267 1..267 1405 100 Plus
CG10472-PA 290 CG10472-PA 37..284 14..264 458 43.5 Plus
CG7542-PB 270 CG7542-PB 27..260 24..259 360 38.2 Plus
CG7542-PA 270 CG7542-PA 27..260 24..259 360 38.2 Plus
CG11529-PA 287 CG11529-PA 25..256 19..260 355 36.1 Plus