Clone Sequence Records
BS17521.complete Sequence
830 bp assembled on 2010-02-09
GenBank Submission: KX804341
> BS17521.complete
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAACAGCATGGTGGTGGAATCGAATATGCCGTCCAGCGACCAAATAC
AAGTGGACATTTAGAAGCTTTCTAGACCAT
BS17521.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 798 | CG30488-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
antr-RB | 819 | CG30488-PB | 1..819 | 17..814 | 3745 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 896 | CG30488-RA | 4..805 | 13..814 | 3995 | 99.9 | Plus |
antr-RB | 917 | CG30488-RB | 4..826 | 13..814 | 3750 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12847428..12847816 | 513..125 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 12846939..12847240 | 814..513 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 12847889..12848001 | 125..13 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:50 has no hits.
BS17521.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:45 Download gff for
BS17521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:43 Download gff for
BS17521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 22..819 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:38 Download gff for
BS17521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 8..805 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:45 Download gff for
BS17521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 12..819 | 5..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:13 Download gff for
BS17521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
antr-RA | 8..805 | 17..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:13 Download gff for
BS17521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12846939..12847239 | 514..814 | 100 | <- | Minus |
2R | 12847428..12847816 | 125..513 | 100 | <- | Minus |
2R | 12847890..12847997 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:38 Download gff for
BS17521.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8734444..8734744 | 514..814 | 100 | <- | Minus |
arm_2R | 8734933..8735321 | 125..513 | 100 | <- | Minus |
arm_2R | 8735395..8735502 | 17..124 | 100 | | Minus |
BS17521.3prime Sequence
827 bp (778 high quality bases) assembled on 2007-05-15
> BS17521.3prime
ATGGTCTAGAAAGCTTCTAAATGTCCACTTGTATTTGGTCGCTGGACGGC
ATATTCGATTCCACCACCATGCTGTTGGCATCGACGTACTCATCCTCGCT
GCAGAGGAACTGGTACATCTGGCTCGGTCCAGTGGCGCACTTCCCGGCAG
GAATCTGGCCCTCTTCGTACGGAACCAGGTTGTTCACACTGGCCCGCGAA
AAGTGGCAGAGCAGGATAATATTTGACTCCTTCTCGTCCCTACCTTTCAC
ACGAAGGCCGCATCCCATACGAGAACCATGGTCCTGAATCAGGGGCATAT
AGTGGCCCACACAGGTTCCTTCTCTTACTGGCACTAATTTCTGACTGTTC
ATCATGCATCCCATGACATCCAGAAACAACTCCGGCAGCAATTTATCTAA
AATCGCACTTTTAAGGCTCTTGGTCCGTCCCATCTTGCTACGGATTTCGG
TGGTTGCCACATAGTGATACTTGTCGGTATTGGCGCAAAACTTTCCCGTC
TCATCGCATTGGCGAACCTGTCTATCCGCCAGCCTCTGCAGTTCAAAATC
CCAGCCCATCGTCGGCATGCGAGCGGCTACCGAATAGTTGCCCACTCCAC
TGGCCACATAGTTGCGCAACATGTTGATCCTGCTGAGGATGCCAGTCTTC
AAGGCTCCATTAACGTTCAGGAACAGATTGTTTTTCCCGCATTGCTCACC
TACTGCATGAATTTCCGAGTTCATGCAGAGATTGGGCTTACAATGGGGAT
CATCTTCTGGTATCAAGCTCGCAGTTAGCGGTACAAAAAGAGGTACAGAT
ACCACATCTTCATGTCGACTGATAACT
BS17521.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30488-PA | 798 | CG30488-RA | 32..798 | 783..17 | 3835 | 100 | Minus |
CG30488-PA | 798 | CG30488-RA | 1..31 | 813..783 | 155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:31:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 896 | CG30488-RA | 4..805 | 817..17 | 3970 | 99.8 | Minus |
antr-RB | 917 | CG30488-RB | 4..826 | 817..17 | 3750 | 97.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:31:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12847428..12847816 | 318..706 | 1945 | 100 | Plus |
2R | 25286936 | 2R | 12846939..12847240 | 17..318 | 1510 | 100 | Plus |
2R | 25286936 | 2R | 12847889..12848001 | 706..817 | 500 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:31:40 has no hits.
BS17521.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:05 Download gff for
BS17521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-PA | 1..798 | 17..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:46 Download gff for
BS17521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 4..805 | 17..817 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:30 Download gff for
BS17521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
antr-RA | 4..805 | 17..817 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:30 Download gff for
BS17521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12846939..12847239 | 17..317 | 100 | <- | Plus |
2R | 12847428..12847816 | 318..706 | 100 | <- | Plus |
2R | 12847890..12848007 | 707..825 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:46 Download gff for
BS17521.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8734444..8734744 | 17..317 | 100 | <- | Plus |
arm_2R | 8734933..8735321 | 318..706 | 100 | <- | Plus |
arm_2R | 8735395..8735512 | 707..825 | 95 | | Plus |
BS17521.5prime Sequence
832 bp (822 high quality bases) assembled on 2007-05-15
> BS17521.5prime
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAACAGCATGGTGGTGGAATCGAATATGCCGTCCAGCGACCAAATAC
AAGTGGACATTTAGAAGCTTTCTAGACCATTT
BS17521.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30488-PA | 798 | CG30488-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-RA | 896 | CG30488-RA | 4..805 | 13..814 | 3995 | 99.9 | Plus |
antr-RB | 917 | CG30488-RB | 4..826 | 13..814 | 3775 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12847428..12847816 | 513..125 | 1945 | 100 | Minus |
2R | 25286936 | 2R | 12846939..12847240 | 814..513 | 1510 | 100 | Minus |
2R | 25286936 | 2R | 12847889..12848001 | 125..13 | 550 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:16:19 has no hits.
BS17521.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:08 Download gff for
BS17521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:19 Download gff for
BS17521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30488-RA | 4..805 | 13..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:03 Download gff for
BS17521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
antr-RA | 4..805 | 13..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:03 Download gff for
BS17521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12846939..12847239 | 514..814 | 100 | <- | Minus |
2R | 12847428..12847816 | 125..513 | 100 | <- | Minus |
2R | 12847890..12848007 | 5..124 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:19 Download gff for
BS17521.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8734444..8734744 | 514..814 | 100 | <- | Minus |
arm_2R | 8734933..8735321 | 125..513 | 100 | <- | Minus |
arm_2R | 8735395..8735512 | 5..124 | 95 | | Minus |
BS17521.pep Sequence
Translation from 16 to 813
> BS17521.pep
MKMWYLYLFLLPLTASLIPEDDPHCKPNLCMNSEIHAVGEQCGKNNLFLN
VNGALKTGILSRINMLRNYVASGVGNYSVAARMPTMGWDFELQRLADRQV
RQCDETGKFCANTDKYHYVATTEIRSKMGRTKSLKSAILDKLLPELFLDV
MGCMMNSQKLVPVREGTCVGHYMPLIQDHGSRMGCGLRVKGRDEKESNII
LLCHFSRASVNNLVPYEEGQIPAGKCATGPSQMYQFLCSEDEYVDANSMV
VESNMPSSDQIQVDI*
BS17521.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
antr-PA | 265 | CG30488-PA | 1..265 | 1..265 | 1409 | 100 | Plus |
antr-PB | 272 | CG30488-PB | 1..272 | 1..265 | 1391 | 97.4 | Plus |
CG30486-PA | 263 | CG30486-PA | 1..257 | 3..249 | 305 | 29.7 | Plus |
CG30486-PB | 219 | CG30486-PB | 3..213 | 42..249 | 287 | 31.5 | Plus |
CG3640-PA | 296 | CG3640-PA | 4..255 | 1..249 | 210 | 25 | Plus |