Clone BS17521 Report

Search the DGRC for BS17521

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptantr-RA
Protein status:BS17521.pep: full length peptide match
Sequenced Size:830

Clone Sequence Records

BS17521.complete Sequence

830 bp assembled on 2010-02-09

GenBank Submission: KX804341

> BS17521.complete
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAACAGCATGGTGGTGGAATCGAATATGCCGTCCAGCGACCAAATAC
AAGTGGACATTTAGAAGCTTTCTAGACCAT

BS17521.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 798 CG30488-PA 1..798 17..814 3990 100 Plus
antr-RB 819 CG30488-PB 1..819 17..814 3745 97.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 896 CG30488-RA 4..805 13..814 3995 99.9 Plus
antr-RB 917 CG30488-RB 4..826 13..814 3750 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12847428..12847816 513..125 1945 100 Minus
2R 25286936 2R 12846939..12847240 814..513 1510 100 Minus
2R 25286936 2R 12847889..12848001 125..13 550 99.1 Minus
Blast to na_te.dros performed on 2014-11-28 03:04:50 has no hits.

BS17521.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:45 Download gff for BS17521.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:43 Download gff for BS17521.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 22..819 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:38 Download gff for BS17521.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 8..805 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:45 Download gff for BS17521.complete
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 12..819 5..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:13 Download gff for BS17521.complete
Subject Subject Range Query Range Percent Splice Strand
antr-RA 8..805 17..814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:13 Download gff for BS17521.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12846939..12847239 514..814 100 <- Minus
2R 12847428..12847816 125..513 100 <- Minus
2R 12847890..12847997 17..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:38 Download gff for BS17521.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8734444..8734744 514..814 100 <- Minus
arm_2R 8734933..8735321 125..513 100 <- Minus
arm_2R 8735395..8735502 17..124 100   Minus

BS17521.3prime Sequence

827 bp (778 high quality bases) assembled on 2007-05-15

> BS17521.3prime
ATGGTCTAGAAAGCTTCTAAATGTCCACTTGTATTTGGTCGCTGGACGGC
ATATTCGATTCCACCACCATGCTGTTGGCATCGACGTACTCATCCTCGCT
GCAGAGGAACTGGTACATCTGGCTCGGTCCAGTGGCGCACTTCCCGGCAG
GAATCTGGCCCTCTTCGTACGGAACCAGGTTGTTCACACTGGCCCGCGAA
AAGTGGCAGAGCAGGATAATATTTGACTCCTTCTCGTCCCTACCTTTCAC
ACGAAGGCCGCATCCCATACGAGAACCATGGTCCTGAATCAGGGGCATAT
AGTGGCCCACACAGGTTCCTTCTCTTACTGGCACTAATTTCTGACTGTTC
ATCATGCATCCCATGACATCCAGAAACAACTCCGGCAGCAATTTATCTAA
AATCGCACTTTTAAGGCTCTTGGTCCGTCCCATCTTGCTACGGATTTCGG
TGGTTGCCACATAGTGATACTTGTCGGTATTGGCGCAAAACTTTCCCGTC
TCATCGCATTGGCGAACCTGTCTATCCGCCAGCCTCTGCAGTTCAAAATC
CCAGCCCATCGTCGGCATGCGAGCGGCTACCGAATAGTTGCCCACTCCAC
TGGCCACATAGTTGCGCAACATGTTGATCCTGCTGAGGATGCCAGTCTTC
AAGGCTCCATTAACGTTCAGGAACAGATTGTTTTTCCCGCATTGCTCACC
TACTGCATGAATTTCCGAGTTCATGCAGAGATTGGGCTTACAATGGGGAT
CATCTTCTGGTATCAAGCTCGCAGTTAGCGGTACAAAAAGAGGTACAGAT
ACCACATCTTCATGTCGACTGATAACT

BS17521.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30488-PA 798 CG30488-RA 32..798 783..17 3835 100 Minus
CG30488-PA 798 CG30488-RA 1..31 813..783 155 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:31:40
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 896 CG30488-RA 4..805 817..17 3970 99.8 Minus
antr-RB 917 CG30488-RB 4..826 817..17 3750 97.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12847428..12847816 318..706 1945 100 Plus
2R 25286936 2R 12846939..12847240 17..318 1510 100 Plus
2R 25286936 2R 12847889..12848001 706..817 500 98.2 Plus
Blast to na_te.dros performed on 2015-02-12 16:31:40 has no hits.

BS17521.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:05 Download gff for BS17521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-PA 1..798 17..813 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:18:46 Download gff for BS17521.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 4..805 17..817 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:37:30 Download gff for BS17521.3prime
Subject Subject Range Query Range Percent Splice Strand
antr-RA 4..805 17..817 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:37:30 Download gff for BS17521.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12846939..12847239 17..317 100 <- Plus
2R 12847428..12847816 318..706 100 <- Plus
2R 12847890..12848007 707..825 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:18:46 Download gff for BS17521.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8734444..8734744 17..317 100 <- Plus
arm_2R 8734933..8735321 318..706 100 <- Plus
arm_2R 8735395..8735512 707..825 95   Plus

BS17521.5prime Sequence

832 bp (822 high quality bases) assembled on 2007-05-15

> BS17521.5prime
GAAGTTATCAGTCGACATGAAGATGTGGTATCTGTACCTCTTTTTGTTAC
CGCTAACTGCGAGCTTGATACCAGAAGATGATCCCCATTGTAAGCCCAAT
CTCTGCATGAACTCGGAAATTCATGCAGTAGGTGAGCAATGCGGGAAAAA
CAATCTGTTCCTGAACGTTAATGGAGCCTTGAAGACTGGCATCCTCAGCA
GGATCAACATGTTGCGCAACTATGTGGCCAGTGGAGTGGGCAACTATTCG
GTAGCCGCTCGCATGCCGACGATGGGCTGGGATTTTGAACTGCAGAGGCT
GGCGGATAGACAGGTTCGCCAATGCGATGAGACGGGAAAGTTTTGCGCCA
ATACCGACAAGTATCACTATGTGGCAACCACCGAAATCCGTAGCAAGATG
GGACGGACCAAGAGCCTTAAAAGTGCGATTTTAGATAAATTGCTGCCGGA
GTTGTTTCTGGATGTCATGGGATGCATGATGAACAGTCAGAAATTAGTGC
CAGTAAGAGAAGGAACCTGTGTGGGCCACTATATGCCCCTGATTCAGGAC
CATGGTTCTCGTATGGGATGCGGCCTTCGTGTGAAAGGTAGGGACGAGAA
GGAGTCAAATATTATCCTGCTCTGCCACTTTTCGCGGGCCAGTGTGAACA
ACCTGGTTCCGTACGAAGAGGGCCAGATTCCTGCCGGGAAGTGCGCCACT
GGACCGAGCCAGATGTACCAGTTCCTCTGCAGCGAGGATGAGTACGTCGA
TGCCAACAGCATGGTGGTGGAATCGAATATGCCGTCCAGCGACCAAATAC
AAGTGGACATTTAGAAGCTTTCTAGACCATTT

BS17521.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30488-PA 798 CG30488-RA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:21
Subject Length Description Subject Range Query Range Score Percent Strand
antr-RA 896 CG30488-RA 4..805 13..814 3995 99.9 Plus
antr-RB 917 CG30488-RB 4..826 13..814 3775 97.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12847428..12847816 513..125 1945 100 Minus
2R 25286936 2R 12846939..12847240 814..513 1510 100 Minus
2R 25286936 2R 12847889..12848001 125..13 550 99.1 Minus
Blast to na_te.dros performed on 2015-02-10 18:16:19 has no hits.

BS17521.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:08 Download gff for BS17521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-PA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:19 Download gff for BS17521.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30488-RA 4..805 13..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:26:03 Download gff for BS17521.5prime
Subject Subject Range Query Range Percent Splice Strand
antr-RA 4..805 13..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:26:03 Download gff for BS17521.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12846939..12847239 514..814 100 <- Minus
2R 12847428..12847816 125..513 100 <- Minus
2R 12847890..12848007 5..124 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:19 Download gff for BS17521.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8734444..8734744 514..814 100 <- Minus
arm_2R 8734933..8735321 125..513 100 <- Minus
arm_2R 8735395..8735512 5..124 95   Minus

BS17521.pep Sequence

Translation from 16 to 813

> BS17521.pep
MKMWYLYLFLLPLTASLIPEDDPHCKPNLCMNSEIHAVGEQCGKNNLFLN
VNGALKTGILSRINMLRNYVASGVGNYSVAARMPTMGWDFELQRLADRQV
RQCDETGKFCANTDKYHYVATTEIRSKMGRTKSLKSAILDKLLPELFLDV
MGCMMNSQKLVPVREGTCVGHYMPLIQDHGSRMGCGLRVKGRDEKESNII
LLCHFSRASVNNLVPYEEGQIPAGKCATGPSQMYQFLCSEDEYVDANSMV
VESNMPSSDQIQVDI*

BS17521.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:15
Subject Length Description Subject Range Query Range Score Percent Strand
antr-PA 265 CG30488-PA 1..265 1..265 1409 100 Plus
antr-PB 272 CG30488-PB 1..272 1..265 1391 97.4 Plus
CG30486-PA 263 CG30486-PA 1..257 3..249 305 29.7 Plus
CG30486-PB 219 CG30486-PB 3..213 42..249 287 31.5 Plus
CG3640-PA 296 CG3640-PA 4..255 1..249 210 25 Plus