Clone Sequence Records
BS17523.complete Sequence
821 bp assembled on 2010-02-09
GenBank Submission: KX805043
> BS17523.complete
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGAAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAAATGAAAGCCGATCGGTATTGCA
AGTAAAAGCTTTCTAGACCAT
BS17523.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 789 | CG6480-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 903 | CG6480-RA | 72..861 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20296084..20296286 | 658..456 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 20296343..20296543 | 458..258 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 20296607..20296789 | 258..76 | 915 | 100 | Minus |
3L | 28110227 | 3L | 20295844..20295992 | 806..658 | 745 | 100 | Minus |
3L | 28110227 | 3L | 20296842..20296900 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:04:33 has no hits.
BS17523.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:09 Download gff for
BS17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:40 Download gff for
BS17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 36..822 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:31 Download gff for
BS17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 72..858 | 17..803 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:10 Download gff for
BS17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:05 Download gff for
BS17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FRG1-RA | 72..858 | 17..803 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:05 Download gff for
BS17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20295847..20295992 | 658..803 | 100 | <- | Minus |
3L | 20296085..20296284 | 458..657 | 100 | <- | Minus |
3L | 20296344..20296542 | 259..457 | 100 | <- | Minus |
3L | 20296607..20296789 | 76..258 | 100 | <- | Minus |
3L | 20296842..20296900 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:31 Download gff for
BS17523.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20289185..20289384 | 458..657 | 100 | <- | Minus |
arm_3L | 20288947..20289092 | 658..803 | 100 | <- | Minus |
arm_3L | 20289444..20289642 | 259..457 | 100 | <- | Minus |
arm_3L | 20289707..20289889 | 76..258 | 100 | <- | Minus |
arm_3L | 20289942..20290000 | 17..75 | 100 | | Minus |
BS17523.3prime Sequence
766 bp (692 high quality bases) assembled on 2007-05-15
> BS17523.3prime
AAATGGTCTAGAAAATAGAAGACTTGCNNTNCCNNTCNNCTTTCNTTTTN
CTGCNTCTNTCCTCNTCAATTTCCTCCCAAGAAACCTNANCTTTTNCCTC
CTCNANTTCTTTNACTTCNTTCTCATTATTCCTCTTCTTCTTGTCCTTNA
ACTTTTNAAATTTTTTCACATACTTCTTCTCCACTTCCCCCAAATCTCCC
TTTTCTTCCTTGAACTCCATATCAATAACCACATCCCTGCTCCCATTACT
CCACAAAGAAGAGATCTCATGCTGACCCACCTTCTTTCNCAATGCCACCC
ATGCTTCCTCTTGGGGATCGATCGACATAAAGTGTCCGGTTTCGGATAGA
AGAGCCATTCGTTGTTCCTCAAAAACCGGCTCCCACTGCTCCATGCCGCC
CACTGCTTCGGAGCGCCCCGTGACCATTCCATCCTTCTCAATTTTCAAGT
ACTTGCCATAGCCAAACTTAAACGCTACCTTTCGGTCGTTGATGGGAAAA
GCCGTGAAAATCTCCTCGGGATCTGGGCCATCGCCAGCGTTGTGTGGTGC
TCCCAATGTGAAGAGACCATTGTCCATGGCCTTTAAGTAACTCCTATCCC
CAAACTCTATGGACACTGTACCGGTGATGTCGGCCGCTGTCTTTGCTGCC
CACCAACCGCCGTGCTTCACGGCATCCTCATCCACTACTACCTTGGCCTT
TTTGAAAGATCCAACCTCATCCTTTTCCTTCTTGCGTTTTTTGCTCTTTT
TGAGTTTCTCACCTTT
BS17523.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6480-PA | 789 | CG6480-RA | 43..547 | 766..262 | 2256 | 97.8 | Minus |
CG6480-PA | 789 | CG6480-RA | 557..673 | 252..136 | 272 | 88.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 903 | CG6480-RA | 114..789 | 766..91 | 2797 | 93.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20296343..20296543 | 367..567 | 990 | 99.5 | Plus |
3L | 28110227 | 3L | 20296607..20296789 | 567..749 | 855 | 97.8 | Plus |
3L | 28110227 | 3L | 20296084..20296286 | 167..369 | 704 | 89.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:30:14 has no hits.
BS17523.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:12 Download gff for
BS17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-PA | 43..692 | 117..766 | 94 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:48 Download gff for
BS17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 114..763 | 117..766 | 94 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:08 Download gff for
BS17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FRG1-RA | 114..763 | 117..766 | 94 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:08 Download gff for
BS17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20296344..20296542 | 368..566 | 99 | <- | Plus |
3L | 20296607..20296789 | 567..749 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:48 Download gff for
BS17523.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20289444..20289642 | 368..566 | 99 | <- | Plus |
arm_3L | 20289707..20289889 | 567..749 | 97 | | Plus |
BS17523.5prime Sequence
819 bp (736 high quality bases) assembled on 2007-05-15
> BS17523.5prime
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGAAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAAATGAAAGCCGATCGGTATTGCA
AGTAAAAGCTTTCTAGACC
BS17523.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6480-PA | 789 | CG6480-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-RA | 903 | CG6480-RA | 72..861 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20296084..20296286 | 658..456 | 1015 | 100 | Minus |
3L | 28110227 | 3L | 20296343..20296543 | 458..258 | 1005 | 100 | Minus |
3L | 28110227 | 3L | 20296607..20296789 | 258..76 | 915 | 100 | Minus |
3L | 28110227 | 3L | 20295844..20295992 | 806..658 | 745 | 100 | Minus |
3L | 28110227 | 3L | 20296842..20296900 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:57:21 has no hits.
BS17523.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:06 Download gff for
BS17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:55 Download gff for
BS17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6480-RA | 62..861 | 5..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:35 Download gff for
BS17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FRG1-RA | 62..861 | 5..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:35 Download gff for
BS17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20296085..20296284 | 458..657 | 100 | <- | Minus |
3L | 20296344..20296542 | 259..457 | 100 | <- | Minus |
3L | 20296607..20296789 | 76..258 | 100 | <- | Minus |
3L | 20296842..20296909 | 5..75 | 93 | | Minus |
3L | 20295844..20295992 | 658..806 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:55 Download gff for
BS17523.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20288944..20289092 | 658..806 | 100 | <- | Minus |
arm_3L | 20289185..20289384 | 458..657 | 100 | <- | Minus |
arm_3L | 20289444..20289642 | 259..457 | 100 | <- | Minus |
arm_3L | 20289707..20289889 | 76..258 | 100 | <- | Minus |
arm_3L | 20289942..20290009 | 5..75 | 93 | | Minus |
BS17523.pep Sequence
Translation from 16 to 804
> BS17523.pep
MSDYDHARIKKLVLKGEKLKKSKKRKKEKDEAGSSKKAKVVVDEDAVKHG
GWWAAKTAADITGTVSIEFGDRSYLKAMDNGLFTLGAPHNAGDGPDPEEI
FTAFPINDRKVAFKSGYGKYLKIEKDGMVTGRSEAVGGMEQWEPVFEEQR
MALLSETGHFMSIDPQDDACVALRKKVGQHEICKVRSNASRDVVIDTEPK
EEKGDLGEVEKNYVKKFQKFQDKKMRINQNDVKELEQAKAQGSLHETLLD
RRSKMKADRYCK*
BS17523.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FRG1-PA | 262 | CG6480-PA | 1..262 | 1..262 | 1365 | 100 | Plus |