Clone BS17523 Report

Search the DGRC for BS17523

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptFRG1-RA
Protein status:BS17523.pep: full length peptide match
Sequenced Size:821

Clone Sequence Records

BS17523.complete Sequence

821 bp assembled on 2010-02-09

GenBank Submission: KX805043

> BS17523.complete
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGAAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAAATGAAAGCCGATCGGTATTGCA
AGTAAAAGCTTTCTAGACCAT

BS17523.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 789 CG6480-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:35
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 903 CG6480-RA 72..861 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20296084..20296286 658..456 1015 100 Minus
3L 28110227 3L 20296343..20296543 458..258 1005 100 Minus
3L 28110227 3L 20296607..20296789 258..76 915 100 Minus
3L 28110227 3L 20295844..20295992 806..658 745 100 Minus
3L 28110227 3L 20296842..20296900 75..17 295 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:04:33 has no hits.

BS17523.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:09 Download gff for BS17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:40 Download gff for BS17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 36..822 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:31 Download gff for BS17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 72..858 17..803 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:10 Download gff for BS17523.complete
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:05 Download gff for BS17523.complete
Subject Subject Range Query Range Percent Splice Strand
FRG1-RA 72..858 17..803 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:05 Download gff for BS17523.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20295847..20295992 658..803 100 <- Minus
3L 20296085..20296284 458..657 100 <- Minus
3L 20296344..20296542 259..457 100 <- Minus
3L 20296607..20296789 76..258 100 <- Minus
3L 20296842..20296900 17..75 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:31 Download gff for BS17523.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20289185..20289384 458..657 100 <- Minus
arm_3L 20288947..20289092 658..803 100 <- Minus
arm_3L 20289444..20289642 259..457 100 <- Minus
arm_3L 20289707..20289889 76..258 100 <- Minus
arm_3L 20289942..20290000 17..75 100   Minus

BS17523.3prime Sequence

766 bp (692 high quality bases) assembled on 2007-05-15

> BS17523.3prime
AAATGGTCTAGAAAATAGAAGACTTGCNNTNCCNNTCNNCTTTCNTTTTN
CTGCNTCTNTCCTCNTCAATTTCCTCCCAAGAAACCTNANCTTTTNCCTC
CTCNANTTCTTTNACTTCNTTCTCATTATTCCTCTTCTTCTTGTCCTTNA
ACTTTTNAAATTTTTTCACATACTTCTTCTCCACTTCCCCCAAATCTCCC
TTTTCTTCCTTGAACTCCATATCAATAACCACATCCCTGCTCCCATTACT
CCACAAAGAAGAGATCTCATGCTGACCCACCTTCTTTCNCAATGCCACCC
ATGCTTCCTCTTGGGGATCGATCGACATAAAGTGTCCGGTTTCGGATAGA
AGAGCCATTCGTTGTTCCTCAAAAACCGGCTCCCACTGCTCCATGCCGCC
CACTGCTTCGGAGCGCCCCGTGACCATTCCATCCTTCTCAATTTTCAAGT
ACTTGCCATAGCCAAACTTAAACGCTACCTTTCGGTCGTTGATGGGAAAA
GCCGTGAAAATCTCCTCGGGATCTGGGCCATCGCCAGCGTTGTGTGGTGC
TCCCAATGTGAAGAGACCATTGTCCATGGCCTTTAAGTAACTCCTATCCC
CAAACTCTATGGACACTGTACCGGTGATGTCGGCCGCTGTCTTTGCTGCC
CACCAACCGCCGTGCTTCACGGCATCCTCATCCACTACTACCTTGGCCTT
TTTGAAAGATCCAACCTCATCCTTTTCCTTCTTGCGTTTTTTGCTCTTTT
TGAGTTTCTCACCTTT

BS17523.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6480-PA 789 CG6480-RA 43..547 766..262 2256 97.8 Minus
CG6480-PA 789 CG6480-RA 557..673 252..136 272 88.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 903 CG6480-RA 114..789 766..91 2797 93.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20296343..20296543 367..567 990 99.5 Plus
3L 28110227 3L 20296607..20296789 567..749 855 97.8 Plus
3L 28110227 3L 20296084..20296286 167..369 704 89.7 Plus
Blast to na_te.dros performed on 2015-02-11 02:30:14 has no hits.

BS17523.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:12 Download gff for BS17523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-PA 43..692 117..766 94   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:00:48 Download gff for BS17523.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 114..763 117..766 94   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:04:08 Download gff for BS17523.3prime
Subject Subject Range Query Range Percent Splice Strand
FRG1-RA 114..763 117..766 94   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:04:08 Download gff for BS17523.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20296344..20296542 368..566 99 <- Plus
3L 20296607..20296789 567..749 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:00:48 Download gff for BS17523.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20289444..20289642 368..566 99 <- Plus
arm_3L 20289707..20289889 567..749 97   Plus

BS17523.5prime Sequence

819 bp (736 high quality bases) assembled on 2007-05-15

> BS17523.5prime
GAAGTTATCAGTCGACATGTCAGACTACGATCATGCACGCATTAAGAAAT
TGGTTCTAAAAGGCGAGAAACTCAAAAAGAGCAAAAAACGCAAGAAGGAA
AAGGATGAGGCTGGATCTTCCAAAAAGGCCAAGGTAGTAGTGGATGAGGA
TGCCGTGAAGCACGGCGGTTGGTGGGCAGCAAAGACAGCGGCCGACATCA
CCGGTACAGTGTCCATAGAGTTTGGCGATAGGAGTTACCTAAAGGCCATG
GACAATGGTCTCTTCACATTGGGAGCACCACACAACGCTGGCGATGGCCC
AGATCCCGAGGAGATTTTCACGGCTTTTCCCATCAACGACCGAAAGGTAG
CGTTTAAGTCTGGCTATGGCAAGTACTTGAAAATTGAGAAGGATGGAATG
GTCACGGGGCGCTCCGAAGCAGTGGGCGGCATGGAGCAGTGGGAGCCGGT
TTTTGAGGAACAACGAATGGCTCTTCTATCCGAAACCGGACACTTTATGT
CGATCGATCCCCAAGACGACGCCTGCGTGGCATTGCGAAAGAAGGTGGGT
CAGCATGAGATCTGTAAAGTGCGGAGTAATGCGAGCAGGGATGTGGTCAT
CGATACGGAGCCCAAGGAAGAAAAGGGAGACTTGGGCGAAGTCGAGAAGA
ACTATGTGAAAAAATTTCAAAAGTTCCAGGACAAGAAGATGCGGATTAAT
CAGAACGATGTCAAAGAACTCGAGCAGGCAAAAGCTCAGGGATCTTTGCA
TGAAACTCTTCTGGATAGACGCAGTAAAATGAAAGCCGATCGGTATTGCA
AGTAAAAGCTTTCTAGACC

BS17523.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG6480-PA 789 CG6480-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-RA 903 CG6480-RA 72..861 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20296084..20296286 658..456 1015 100 Minus
3L 28110227 3L 20296343..20296543 458..258 1005 100 Minus
3L 28110227 3L 20296607..20296789 258..76 915 100 Minus
3L 28110227 3L 20295844..20295992 806..658 745 100 Minus
3L 28110227 3L 20296842..20296900 75..17 295 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:57:21 has no hits.

BS17523.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:06 Download gff for BS17523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:55 Download gff for BS17523.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6480-RA 62..861 5..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:35 Download gff for BS17523.5prime
Subject Subject Range Query Range Percent Splice Strand
FRG1-RA 62..861 5..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:35 Download gff for BS17523.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20296085..20296284 458..657 100 <- Minus
3L 20296344..20296542 259..457 100 <- Minus
3L 20296607..20296789 76..258 100 <- Minus
3L 20296842..20296909 5..75 93   Minus
3L 20295844..20295992 658..806 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:55 Download gff for BS17523.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20288944..20289092 658..806 100 <- Minus
arm_3L 20289185..20289384 458..657 100 <- Minus
arm_3L 20289444..20289642 259..457 100 <- Minus
arm_3L 20289707..20289889 76..258 100 <- Minus
arm_3L 20289942..20290009 5..75 93   Minus

BS17523.pep Sequence

Translation from 16 to 804

> BS17523.pep
MSDYDHARIKKLVLKGEKLKKSKKRKKEKDEAGSSKKAKVVVDEDAVKHG
GWWAAKTAADITGTVSIEFGDRSYLKAMDNGLFTLGAPHNAGDGPDPEEI
FTAFPINDRKVAFKSGYGKYLKIEKDGMVTGRSEAVGGMEQWEPVFEEQR
MALLSETGHFMSIDPQDDACVALRKKVGQHEICKVRSNASRDVVIDTEPK
EEKGDLGEVEKNYVKKFQKFQDKKMRINQNDVKELEQAKAQGSLHETLLD
RRSKMKADRYCK*

BS17523.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:06
Subject Length Description Subject Range Query Range Score Percent Strand
FRG1-PA 262 CG6480-PA 1..262 1..262 1365 100 Plus