Clone BS17528 Report

Search the DGRC for BS17528

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG4074-RA
Protein status:BS17528.pep: full length peptide match
Sequenced Size:920

Clone Sequence Records

BS17528.complete Sequence

920 bp assembled on 2010-02-09

GenBank Submission: KX800368

> BS17528.complete
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAAAGAGGACTACACGGTTAGTGAGAACTTCAAAATAGTC
CTTAAACGTTCGACAGGTCCTCTTCCCAGCAAAGTAACAACTGCAGGACG
CTAAAAGCTTTCTAGACCAT

BS17528.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 888 CG4074-PB 1..888 17..904 4440 100 Plus
CG4074-RA 888 CG4074-PA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 1157 CG4074-RB 67..958 14..905 4460 100 Plus
CG4074-RA 1022 CG4074-RA 67..958 14..905 4460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20768593..20769361 782..14 3845 100 Minus
3L 28110227 3L 20768406..20768529 905..782 620 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:02 has no hits.

BS17528.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:10 Download gff for BS17528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:57 Download gff for BS17528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 1..886 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:05 Download gff for BS17528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 70..955 17..902 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:10 Download gff for BS17528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 1..888 17..904 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:22 Download gff for BS17528.complete
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 70..955 17..902 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:22 Download gff for BS17528.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20768409..20768528 783..902 100 <- Minus
3L 20768593..20769358 17..782 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:05 Download gff for BS17528.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20761509..20761628 783..902 100 <- Minus
arm_3L 20761693..20762458 17..782 100   Minus

BS17528.3prime Sequence

856 bp (786 high quality bases) assembled on 2007-05-15

> BS17528.3prime
ATGGTCTAGAAAGCTTTTAGCGTCCTGCAGTTGTTACTTTGCTGGGAAGA
GGACCTGTCGAACGTTTAAGGACTATTTTGAAGTTCTCACTAACCGTGTA
GTCCTCTTTAAATACAACAATCAGATTAAGTTCAAACTCGATTTTGAAGT
TCTTCGTGAGCAACGTAGGGCAGGTGAACAATCTGGGCAGGACCATATGG
ATGGGTAGTTCTAGCTTCGGCAGTACATTGCCGTCGGCTATTTGAATGGT
CTGGATTTCGGTGGCATCCTTGGAGTACCCCTCGTCGCAACCGCAGGTTT
CCACACGAACCAATTGCATCTCAATGGACTTAATGGCCGCCTCCGTGTGT
TGCACCGTAATGCTGCCAGTAATCGGAGTTGTTACGCAGAATTCACTCCG
GTCCAGGCGCCCAGTTATAAGGAATCTCGGCATGGAAAGTCTCTCCTTGG
CGCTGGCATTCTTCTGCAGTGAGTCCGGACTCAAACTAAAAGGAACCACT
TTCTTTGAATCCTCGCTTAGAGGCACCGGTTTGTATTGCACGCAGAACTG
CTGGATTTTGGTCGTGGCTTTGCCAAGAAAATTCCTTTTTACAGTGCAAG
TGAGTTGGTAATTCACGTTAATGAATACTCCGTGGTATGTTTCATATAGA
ATTCGCGGTTCCTTTTTGCACACCAAAGGCAGTTCGAAATGGAACTCCGA
ACGGCCGGCGCTCAGTTTTCCGGGCGCAGATAACTCCAGGCTATTCTGCA
GCAGATTAATAGGTTTCACCGAGTTATAGAAAGCATCGAANAGCCCAACG
GTCTTAGCACTAAGTTGCAGATTAACGATTCCCTCCAGATACAATATAAT
TCCTTC

BS17528.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-PA 888 CG4074-RA 49..888 856..17 4181 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 1157 CG4074-RB 118..958 856..16 4194 99.9 Minus
CG4074-RA 1022 CG4074-RA 118..958 856..16 4194 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20768593..20769310 139..856 3579 99.9 Plus
3L 28110227 3L 20768406..20768529 16..139 620 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:56:20 has no hits.

BS17528.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:20 Download gff for BS17528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-PA 49..888 17..856 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:33 Download gff for BS17528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 118..958 16..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:57 Download gff for BS17528.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 118..958 16..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:57 Download gff for BS17528.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20768406..20768528 16..138 100 <- Plus
3L 20768593..20769310 139..856 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:33 Download gff for BS17528.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20761506..20761628 16..138 100 <- Plus
arm_3L 20761693..20762410 139..856 99   Plus

BS17528.5prime Sequence

813 bp (765 high quality bases) assembled on 2007-05-15

> BS17528.5prime
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAA

BS17528.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-PA 888 CG4074-RA 1..797 17..813 3985 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-RB 1157 CG4074-RB 67..866 14..813 4000 100 Plus
CG4074-RA 1022 CG4074-RA 67..866 14..813 4000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20768593..20769361 782..14 3845 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:41:09 has no hits.

BS17528.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:16 Download gff for BS17528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:39 Download gff for BS17528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 67..866 14..813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:37 Download gff for BS17528.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4074-RA 67..866 14..813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:37 Download gff for BS17528.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20768498..20768528 783..813 100 <- Minus
3L 20768593..20769364 9..782 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:39 Download gff for BS17528.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20761598..20761628 783..813 100 <- Minus
arm_3L 20761693..20762464 9..782 99   Minus

BS17528.pep Sequence

Translation from 16 to 903

> BS17528.pep
MLLGCVQFQCAQETKHEGIILYLEGIVNLQLSAKTVGLFDAFYNSVKPIN
LLQNSLELSAPGKLSAGRSEFHFELPLVCKKEPRILYETYHGVFINVNYQ
LTCTVKRNFLGKATTKIQQFCVQYKPVPLSEDSKKVVPFSLSPDSLQKNA
SAKERLSMPRFLITGRLDRSEFCVTTPITGSITVQHTEAAIKSIEMQLVR
VETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIHMVLPRLFTCPTLLT
KNFKIEFELNLIVVFKEDYTVSENFKIVLKRSTGPLPSKVTTAGR*

BS17528.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4074-PB 295 CG4074-PB 1..295 1..295 1515 100 Plus
CG4074-PA 295 CG4074-PA 1..295 1..295 1515 100 Plus