Clone Sequence Records
BS17528.complete Sequence
920 bp assembled on 2010-02-09
GenBank Submission: KX800368
> BS17528.complete
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAAAGAGGACTACACGGTTAGTGAGAACTTCAAAATAGTC
CTTAAACGTTCGACAGGTCCTCTTCCCAGCAAAGTAACAACTGCAGGACG
CTAAAAGCTTTCTAGACCAT
BS17528.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 888 | CG4074-PB | 1..888 | 17..904 | 4440 | 100 | Plus |
CG4074-RA | 888 | CG4074-PA | 1..888 | 17..904 | 4440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 1157 | CG4074-RB | 67..958 | 14..905 | 4460 | 100 | Plus |
CG4074-RA | 1022 | CG4074-RA | 67..958 | 14..905 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20768593..20769361 | 782..14 | 3845 | 100 | Minus |
3L | 28110227 | 3L | 20768406..20768529 | 905..782 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:02 has no hits.
BS17528.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:10 Download gff for
BS17528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:57 Download gff for
BS17528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 1..886 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:05 Download gff for
BS17528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 70..955 | 17..902 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:10 Download gff for
BS17528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 1..888 | 17..904 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:22 Download gff for
BS17528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 70..955 | 17..902 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:22 Download gff for
BS17528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20768409..20768528 | 783..902 | 100 | <- | Minus |
3L | 20768593..20769358 | 17..782 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:05 Download gff for
BS17528.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20761509..20761628 | 783..902 | 100 | <- | Minus |
arm_3L | 20761693..20762458 | 17..782 | 100 | | Minus |
BS17528.3prime Sequence
856 bp (786 high quality bases) assembled on 2007-05-15
> BS17528.3prime
ATGGTCTAGAAAGCTTTTAGCGTCCTGCAGTTGTTACTTTGCTGGGAAGA
GGACCTGTCGAACGTTTAAGGACTATTTTGAAGTTCTCACTAACCGTGTA
GTCCTCTTTAAATACAACAATCAGATTAAGTTCAAACTCGATTTTGAAGT
TCTTCGTGAGCAACGTAGGGCAGGTGAACAATCTGGGCAGGACCATATGG
ATGGGTAGTTCTAGCTTCGGCAGTACATTGCCGTCGGCTATTTGAATGGT
CTGGATTTCGGTGGCATCCTTGGAGTACCCCTCGTCGCAACCGCAGGTTT
CCACACGAACCAATTGCATCTCAATGGACTTAATGGCCGCCTCCGTGTGT
TGCACCGTAATGCTGCCAGTAATCGGAGTTGTTACGCAGAATTCACTCCG
GTCCAGGCGCCCAGTTATAAGGAATCTCGGCATGGAAAGTCTCTCCTTGG
CGCTGGCATTCTTCTGCAGTGAGTCCGGACTCAAACTAAAAGGAACCACT
TTCTTTGAATCCTCGCTTAGAGGCACCGGTTTGTATTGCACGCAGAACTG
CTGGATTTTGGTCGTGGCTTTGCCAAGAAAATTCCTTTTTACAGTGCAAG
TGAGTTGGTAATTCACGTTAATGAATACTCCGTGGTATGTTTCATATAGA
ATTCGCGGTTCCTTTTTGCACACCAAAGGCAGTTCGAAATGGAACTCCGA
ACGGCCGGCGCTCAGTTTTCCGGGCGCAGATAACTCCAGGCTATTCTGCA
GCAGATTAATAGGTTTCACCGAGTTATAGAAAGCATCGAANAGCCCAACG
GTCTTAGCACTAAGTTGCAGATTAACGATTCCCTCCAGATACAATATAAT
TCCTTC
BS17528.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-PA | 888 | CG4074-RA | 49..888 | 856..17 | 4181 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 1157 | CG4074-RB | 118..958 | 856..16 | 4194 | 99.9 | Minus |
CG4074-RA | 1022 | CG4074-RA | 118..958 | 856..16 | 4194 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20768593..20769310 | 139..856 | 3579 | 99.9 | Plus |
3L | 28110227 | 3L | 20768406..20768529 | 16..139 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:56:20 has no hits.
BS17528.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:20 Download gff for
BS17528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-PA | 49..888 | 17..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:33 Download gff for
BS17528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 118..958 | 16..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:20:57 Download gff for
BS17528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 118..958 | 16..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:20:57 Download gff for
BS17528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20768406..20768528 | 16..138 | 100 | <- | Plus |
3L | 20768593..20769310 | 139..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:33 Download gff for
BS17528.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20761506..20761628 | 16..138 | 100 | <- | Plus |
arm_3L | 20761693..20762410 | 139..856 | 99 | | Plus |
BS17528.5prime Sequence
813 bp (765 high quality bases) assembled on 2007-05-15
> BS17528.5prime
GAAGTTATCAGTCGACATGCTGTTGGGCTGCGTGCAGTTTCAGTGCGCCC
AGGAGACAAAACACGAAGGAATTATATTGTATCTGGAGGGAATCGTTAAT
CTGCAACTTAGTGCTAAGACCGTTGGGCTTTTCGATGCTTTCTATAACTC
GGTGAAACCTATTAATCTGCTGCAGAATAGCCTGGAGTTATCTGCGCCCG
GAAAACTGAGCGCCGGCCGTTCGGAGTTCCATTTCGAACTGCCTTTGGTG
TGCAAAAAGGAACCGCGAATTCTATATGAAACATACCACGGAGTATTCAT
TAACGTGAATTACCAACTCACTTGCACTGTAAAAAGGAATTTTCTTGGCA
AAGCCACGACCAAAATCCAGCAGTTCTGCGTGCAATACAAACCGGTGCCT
CTAAGCGAGGATTCAAAGAAAGTGGTTCCTTTTAGTTTGAGTCCGGACTC
ACTGCAGAAGAATGCCAGCGCCAAGGAGAGACTTTCCATGCCGAGATTCC
TTATAACTGGGCGCCTGGACCGGAGTGAATTCTGCGTAACAACTCCGATT
ACTGGCAGCATTACGGTGCAACACACGGAGGCGGCCATTAAGTCCATTGA
GATGCAATTGGTTCGTGTGGAAACCTGCGGTTGCGACGAGGGGTACTCCA
AGGATGCCACCGAAATCCAGACCATTCAAATAGCCGACGGCAATGTACTG
CCGAAGCTAGAACTACCCATCCATATGGTCCTGCCCAGATTGTTCACCTG
CCCTACGTTGCTCACGAAGAACTTCAAAATCGAGTTTGAACTTAATCTGA
TTGTTGTATTTAA
BS17528.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-PA | 888 | CG4074-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-RB | 1157 | CG4074-RB | 67..866 | 14..813 | 4000 | 100 | Plus |
CG4074-RA | 1022 | CG4074-RA | 67..866 | 14..813 | 4000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20768593..20769361 | 782..14 | 3845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:41:09 has no hits.
BS17528.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:16 Download gff for
BS17528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:39 Download gff for
BS17528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 67..866 | 14..813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:37 Download gff for
BS17528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4074-RA | 67..866 | 14..813 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:37 Download gff for
BS17528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20768498..20768528 | 783..813 | 100 | <- | Minus |
3L | 20768593..20769364 | 9..782 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:39 Download gff for
BS17528.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20761598..20761628 | 783..813 | 100 | <- | Minus |
arm_3L | 20761693..20762464 | 9..782 | 99 | | Minus |
BS17528.pep Sequence
Translation from 16 to 903
> BS17528.pep
MLLGCVQFQCAQETKHEGIILYLEGIVNLQLSAKTVGLFDAFYNSVKPIN
LLQNSLELSAPGKLSAGRSEFHFELPLVCKKEPRILYETYHGVFINVNYQ
LTCTVKRNFLGKATTKIQQFCVQYKPVPLSEDSKKVVPFSLSPDSLQKNA
SAKERLSMPRFLITGRLDRSEFCVTTPITGSITVQHTEAAIKSIEMQLVR
VETCGCDEGYSKDATEIQTIQIADGNVLPKLELPIHMVLPRLFTCPTLLT
KNFKIEFELNLIVVFKEDYTVSENFKIVLKRSTGPLPSKVTTAGR*
BS17528.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4074-PB | 295 | CG4074-PB | 1..295 | 1..295 | 1515 | 100 | Plus |
CG4074-PA | 295 | CG4074-PA | 1..295 | 1..295 | 1515 | 100 | Plus |