Clone Sequence Records
BS17529.complete Sequence
893 bp assembled on 2010-02-09
GenBank Submission: KX800863
> BS17529.complete
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAGAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGCCGTGGTGCCG
CTGCACGAGGATCTGATATCTTCGCAGTTCTGGAAGGAACACACCGAAAT
ATTGGGAAAATATGTGCCAGGCACATACGACGCACCACAAACTTTTCCCC
GATTGGTGGAGATGCAAATAAATGGCAAGGATGACAATGAGGCGGAGGAG
CCACAAAATCTGGCTGGTACCAGCTGAAAGCTTTCTAGACCAT
BS17529.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 861 | CG4103-PB | 1..861 | 17..877 | 4305 | 100 | Plus |
l(2)35Bc-RA | 861 | CG4103-PA | 1..861 | 17..877 | 4305 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 1076 | CG4103-RB | 22..883 | 16..877 | 4310 | 100 | Plus |
l(2)35Bc-RA | 1149 | CG4103-RA | 95..956 | 16..877 | 4310 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15008682..15009395 | 877..164 | 3570 | 100 | Minus |
2L | 23513712 | 2L | 15009450..15009598 | 164..16 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:07 has no hits.
BS17529.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:11 Download gff for
BS17529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-RA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:59 Download gff for
BS17529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-RA | 1..860 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:08 Download gff for
BS17529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 96..955 | 17..876 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:11 Download gff for
BS17529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-RA | 1..861 | 17..877 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:24 Download gff for
BS17529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 96..955 | 17..876 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:24 Download gff for
BS17529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15008683..15009394 | 165..876 | 100 | <- | Minus |
2L | 15009450..15009597 | 17..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:08 Download gff for
BS17529.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15008683..15009394 | 165..876 | 100 | <- | Minus |
arm_2L | 15009450..15009597 | 17..164 | 100 | | Minus |
BS17529.3prime Sequence
890 bp (767 high quality bases) assembled on 2007-05-15
> BS17529.3prime
ATGGTCTAGAAAGCTTTCAGCTGGTACCAGCCAGATTTTGTGGCTCCTCC
GCCTCATTGTCATCCTTGCCATTTATTTGCATCTCCACCAATCGGGGAAA
AGTTTGTGGTGCGTCGTATGTGCCTGGCACATATTTTCCCAATATTTCGG
TGTGTTCCTTCCAGAACTGCGAAGATATCAGATCCTCGTGCAGCGGCACC
ACGGCCTGCCTGCTCTTCTCACCCAATATCACGCGTTTTCTCAGCAGAAT
CGTTCCCTTTCTGTACATTGCCGGCAGATTGTTGTAATTTATCCCGAATT
CCTGGAAGAGCAGCTCATTTTTGTCCGCCGAAAAGGTGCCACGGAGTTTC
GCCTCGGCTTGCTGGTTCGTCAGGCCTTTTTCCAAAACGAGTTTCCAAAA
GGCGGTATTGTACAGGTTGTTCACATGCACATCGGCCTGTCGCCAGCTGA
GATAGTCCTTTAGATTCTGCTCCGAAGGATACAGAACAACGCGACCATCG
AAACACGGAGCATAGGCCAATGGCAGATTCATCCACTTGGACCATTGCAT
TACATAGCTCGAGGAGAACAAGCTGGTGACGTAGGTGAGCAGTTTGGCGG
ATCGTCGCTTGAACGCTGCCGTCTCTTTGCGAAAAACAAAGGAGTACTCA
TCACTTTGACCGTAGGCGAGGACAATATCCCGAAACTCCTGCATCACCGC
CGTGGCAGCAGCATTCATCACATTGAGAGCATTTTCATCGTTGGGCTTTT
CAAAATCGTGCGTCTTGGAGAACTTGTGGAACTTTTTGCCGTCTATTCGT
ATGACTATCCACACATTAGGCAGTATGCTGTCGTCCTGCTCAAAGGATTT
AACGTACTCGAATCTGCTGCAGGCCATGTCGACTGATAAC
BS17529.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4103-PA | 861 | CG4103-RA | 1..861 | 877..17 | 4305 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 1076 | CG4103-RB | 22..883 | 878..17 | 4310 | 100 | Minus |
l(2)35Bc-RA | 1149 | CG4103-RA | 95..956 | 878..17 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15008682..15009395 | 17..730 | 3570 | 100 | Plus |
2L | 23513712 | 2L | 15009450..15009598 | 730..878 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:01:58 has no hits.
BS17529.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:29 Download gff for
BS17529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-PA | 1..861 | 17..877 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:58 Download gff for
BS17529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 95..956 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:10 Download gff for
BS17529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 95..956 | 17..878 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:10 Download gff for
BS17529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15008682..15009394 | 17..729 | 100 | <- | Plus |
2L | 15009450..15009598 | 730..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:58 Download gff for
BS17529.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15008682..15009394 | 17..729 | 100 | <- | Plus |
arm_2L | 15009450..15009598 | 730..878 | 100 | | Plus |
BS17529.5prime Sequence
814 bp (813 high quality bases) assembled on 2007-05-15
> BS17529.5prime
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAGAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGCCGTGGTGCCG
CTGCACGAGGATCTGATATCTTCGCAGTTCTGGAAGGAACACACCGAAAT
ATTGGGAAAATATGTGCCAGGCACATACGACGCACCACAAACTTTTCCCC
GATTGGTGGAGATG
BS17529.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4103-PA | 861 | CG4103-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-RB | 1076 | CG4103-RB | 22..820 | 16..814 | 3995 | 100 | Plus |
l(2)35Bc-RA | 1149 | CG4103-RA | 95..893 | 16..814 | 3995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15008745..15009395 | 814..164 | 3255 | 100 | Minus |
2L | 23513712 | 2L | 15009450..15009598 | 164..16 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:24:01 has no hits.
BS17529.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:26 Download gff for
BS17529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4103-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:50 Download gff for
BS17529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 95..893 | 16..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:36 Download gff for
BS17529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(2)35Bc-RA | 95..893 | 16..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:36 Download gff for
BS17529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15008745..15009394 | 165..814 | 100 | <- | Minus |
2L | 15009450..15009598 | 16..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:50 Download gff for
BS17529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15008745..15009394 | 165..814 | 100 | <- | Minus |
arm_2L | 15009450..15009598 | 16..164 | 100 | | Minus |
BS17529.pep Sequence
Translation from 16 to 876
> BS17529.pep
MACSRFEYVKSFEQDDSILPNVWIVIRIDGKKFHKFSKTHDFEKPNDENA
LNVMNAAATAVMQEFRDIVLAYGQSDEYSFVFRKETAAFKRRSAKLLTYV
TSLFSSSYVMQWSKWMNLPLAYAPCFDGRVVLYPSEQNLKDYLSWRQADV
HVNNLYNTAFWKLVLEKGLTNQQAEAKLRGTFSADKNELLFQEFGINYNN
LPAMYRKGTILLRKRVILGEKSRQAVVPLHEDLISSQFWKEHTEILGKYV
PGTYDAPQTFPRLVEMQINGKDDNEAEEPQNLAGTS*
BS17529.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(2)35Bc-PB | 286 | CG4103-PB | 1..286 | 1..286 | 1501 | 100 | Plus |
l(2)35Bc-PA | 286 | CG4103-PA | 1..286 | 1..286 | 1501 | 100 | Plus |