Clone BS17529 Report

Search the DGRC for BS17529

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:29
Vector:pDNR-Dual
Associated Gene/Transcriptl(2)35Bc-RA
Protein status:BS17529.pep: full length peptide match
Sequenced Size:893

Clone Sequence Records

BS17529.complete Sequence

893 bp assembled on 2010-02-09

GenBank Submission: KX800863

> BS17529.complete
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAGAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGCCGTGGTGCCG
CTGCACGAGGATCTGATATCTTCGCAGTTCTGGAAGGAACACACCGAAAT
ATTGGGAAAATATGTGCCAGGCACATACGACGCACCACAAACTTTTCCCC
GATTGGTGGAGATGCAAATAAATGGCAAGGATGACAATGAGGCGGAGGAG
CCACAAAATCTGGCTGGTACCAGCTGAAAGCTTTCTAGACCAT

BS17529.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:08
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 861 CG4103-PB 1..861 17..877 4305 100 Plus
l(2)35Bc-RA 861 CG4103-PA 1..861 17..877 4305 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 1076 CG4103-RB 22..883 16..877 4310 100 Plus
l(2)35Bc-RA 1149 CG4103-RA 95..956 16..877 4310 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15008682..15009395 877..164 3570 100 Minus
2L 23513712 2L 15009450..15009598 164..16 745 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:07 has no hits.

BS17529.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:11 Download gff for BS17529.complete
Subject Subject Range Query Range Percent Splice Strand
CG4103-RA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:59 Download gff for BS17529.complete
Subject Subject Range Query Range Percent Splice Strand
CG4103-RA 1..860 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:08 Download gff for BS17529.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 96..955 17..876 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:11 Download gff for BS17529.complete
Subject Subject Range Query Range Percent Splice Strand
CG4103-RA 1..861 17..877 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:24 Download gff for BS17529.complete
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 96..955 17..876 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:24 Download gff for BS17529.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15008683..15009394 165..876 100 <- Minus
2L 15009450..15009597 17..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:08 Download gff for BS17529.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15008683..15009394 165..876 100 <- Minus
arm_2L 15009450..15009597 17..164 100   Minus

BS17529.3prime Sequence

890 bp (767 high quality bases) assembled on 2007-05-15

> BS17529.3prime
ATGGTCTAGAAAGCTTTCAGCTGGTACCAGCCAGATTTTGTGGCTCCTCC
GCCTCATTGTCATCCTTGCCATTTATTTGCATCTCCACCAATCGGGGAAA
AGTTTGTGGTGCGTCGTATGTGCCTGGCACATATTTTCCCAATATTTCGG
TGTGTTCCTTCCAGAACTGCGAAGATATCAGATCCTCGTGCAGCGGCACC
ACGGCCTGCCTGCTCTTCTCACCCAATATCACGCGTTTTCTCAGCAGAAT
CGTTCCCTTTCTGTACATTGCCGGCAGATTGTTGTAATTTATCCCGAATT
CCTGGAAGAGCAGCTCATTTTTGTCCGCCGAAAAGGTGCCACGGAGTTTC
GCCTCGGCTTGCTGGTTCGTCAGGCCTTTTTCCAAAACGAGTTTCCAAAA
GGCGGTATTGTACAGGTTGTTCACATGCACATCGGCCTGTCGCCAGCTGA
GATAGTCCTTTAGATTCTGCTCCGAAGGATACAGAACAACGCGACCATCG
AAACACGGAGCATAGGCCAATGGCAGATTCATCCACTTGGACCATTGCAT
TACATAGCTCGAGGAGAACAAGCTGGTGACGTAGGTGAGCAGTTTGGCGG
ATCGTCGCTTGAACGCTGCCGTCTCTTTGCGAAAAACAAAGGAGTACTCA
TCACTTTGACCGTAGGCGAGGACAATATCCCGAAACTCCTGCATCACCGC
CGTGGCAGCAGCATTCATCACATTGAGAGCATTTTCATCGTTGGGCTTTT
CAAAATCGTGCGTCTTGGAGAACTTGTGGAACTTTTTGCCGTCTATTCGT
ATGACTATCCACACATTAGGCAGTATGCTGTCGTCCTGCTCAAAGGATTT
AACGTACTCGAATCTGCTGCAGGCCATGTCGACTGATAAC

BS17529.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4103-PA 861 CG4103-RA 1..861 877..17 4305 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 1076 CG4103-RB 22..883 878..17 4310 100 Minus
l(2)35Bc-RA 1149 CG4103-RA 95..956 878..17 4310 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15008682..15009395 17..730 3570 100 Plus
2L 23513712 2L 15009450..15009598 730..878 745 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:01:58 has no hits.

BS17529.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:29 Download gff for BS17529.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4103-PA 1..861 17..877 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:35:58 Download gff for BS17529.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 95..956 17..878 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:27:10 Download gff for BS17529.3prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 95..956 17..878 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:27:10 Download gff for BS17529.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15008682..15009394 17..729 100 <- Plus
2L 15009450..15009598 730..878 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:35:58 Download gff for BS17529.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15008682..15009394 17..729 100 <- Plus
arm_2L 15009450..15009598 730..878 100   Plus

BS17529.5prime Sequence

814 bp (813 high quality bases) assembled on 2007-05-15

> BS17529.5prime
GAAGTTATCAGTCGACATGGCCTGCAGCAGATTCGAGTACGTTAAATCCT
TTGAGCAGGACGACAGCATACTGCCTAATGTGTGGATAGTCATACGAATA
GACGGCAAAAAGTTCCACAAGTTCTCCAAGACGCACGATTTTGAAAAGCC
CAACGATGAAAATGCTCTCAATGTGATGAATGCTGCTGCCACGGCGGTGA
TGCAGGAGTTTCGGGATATTGTCCTCGCCTACGGTCAAAGTGATGAGTAC
TCCTTTGTTTTTCGCAAAGAGACGGCAGCGTTCAAGCGACGATCCGCCAA
ACTGCTCACCTACGTCACCAGCTTGTTCTCCTCGAGCTATGTAATGCAAT
GGTCCAAGTGGATGAATCTGCCATTGGCCTATGCTCCGTGTTTCGATGGT
CGCGTTGTTCTGTATCCTTCGGAGCAGAATCTAAAGGACTATCTCAGCTG
GCGACAGGCCGATGTGCATGTGAACAACCTGTACAATACCGCCTTTTGGA
AACTCGTTTTGGAAAAAGGCCTGACGAACCAGCAAGCCGAGGCGAAACTC
CGTGGCACCTTTTCGGCGGACAAAAATGAGCTGCTCTTCCAGGAATTCGG
GATAAATTACAACAATCTGCCGGCAATGTACAGAAAGGGAACGATTCTGC
TGAGAAAACGCGTGATATTGGGTGAGAAGAGCAGGCAGGCCGTGGTGCCG
CTGCACGAGGATCTGATATCTTCGCAGTTCTGGAAGGAACACACCGAAAT
ATTGGGAAAATATGTGCCAGGCACATACGACGCACCACAAACTTTTCCCC
GATTGGTGGAGATG

BS17529.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4103-PA 861 CG4103-RA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-RB 1076 CG4103-RB 22..820 16..814 3995 100 Plus
l(2)35Bc-RA 1149 CG4103-RA 95..893 16..814 3995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15008745..15009395 814..164 3255 100 Minus
2L 23513712 2L 15009450..15009598 164..16 745 100 Minus
Blast to na_te.dros performed on 2015-02-13 13:24:01 has no hits.

BS17529.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:26 Download gff for BS17529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4103-PA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:41:50 Download gff for BS17529.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 95..893 16..814 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:36 Download gff for BS17529.5prime
Subject Subject Range Query Range Percent Splice Strand
l(2)35Bc-RA 95..893 16..814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:36 Download gff for BS17529.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15008745..15009394 165..814 100 <- Minus
2L 15009450..15009598 16..164 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:41:50 Download gff for BS17529.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15008745..15009394 165..814 100 <- Minus
arm_2L 15009450..15009598 16..164 100   Minus

BS17529.pep Sequence

Translation from 16 to 876

> BS17529.pep
MACSRFEYVKSFEQDDSILPNVWIVIRIDGKKFHKFSKTHDFEKPNDENA
LNVMNAAATAVMQEFRDIVLAYGQSDEYSFVFRKETAAFKRRSAKLLTYV
TSLFSSSYVMQWSKWMNLPLAYAPCFDGRVVLYPSEQNLKDYLSWRQADV
HVNNLYNTAFWKLVLEKGLTNQQAEAKLRGTFSADKNELLFQEFGINYNN
LPAMYRKGTILLRKRVILGEKSRQAVVPLHEDLISSQFWKEHTEILGKYV
PGTYDAPQTFPRLVEMQINGKDDNEAEEPQNLAGTS*

BS17529.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
l(2)35Bc-PB 286 CG4103-PB 1..286 1..286 1501 100 Plus
l(2)35Bc-PA 286 CG4103-PA 1..286 1..286 1501 100 Plus