Clone Sequence Records
BS17530.complete Sequence
800 bp assembled on 2010-02-09
GenBank Submission: KX801205
> BS17530.complete
GAAGTTATCAGTCGACATGCATTTCCTGGCCTACGTGATTATAACAATTC
AGCTGTTCGGTGGACTGCAGTGCCAGAAGTTGCCTGCCAAGGTGAAAAAA
TGCCACTTCGGTGACGGAAAGTGCCTGGTAGAGTCGGCAAATGCACTGCT
GAGAGATTTTCCAAAGGGCATTCCCGAGGTCGATCTGAAACCCTTCAATG
TGCTGTCCGTGCGGGATTGGCTGCTGGTCAACGATTCCCAGGTGGGAGGT
GCCTGGTACTACTTCAATCTGATCAATCAGATCAACTATGGCTTCGAGAA
CACCACGATCACGGAGATCAGGGGATTCGACAAGGATCCCACCACCACCA
AGATCGAAATTCACGGCAAGATTCCCCGGCTGGTTTACAAGGGCGACTAT
GTGGCCAAGGGACGGATGCTCTGGTTCGTCGATATCCACTCTCAGGGAAC
GTCGGAGTCGGATTTCCTCAATTTTCAATTCGTTCTTACGCTGAAAGTGC
GCGTCGAGTACAGAAACAACAAGAGATATTTAAAGATCTACGAGCTAGTT
CCTAATATAAGGCTGGACCGCTGGATTATGTGGCTAGACAACTTCTTTCC
CGACAATGAAGACCTAACGATTGCAGTTAACAATCTGTTCAACCGGAATT
GGGTGGAGTTCTGGAACGAACTGGAGCCGGGTATTCTGCGTTTGTTCGAA
ACCGTCTTTTTAAGTCTATTTGAGGATTTATTCGAAAAAGTACCCTATGA
TGATCTGTTCCTAGCCGCTGAAGACCCAAAGTAAAAGCTTTCTAGACCAT
BS17530.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-RB | 768 | CG7079-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG7079-RA | 768 | CG7079-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
| CG31207-RA | 777 | CG31207-PA | 245..351 | 261..367 | 205 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-RB | 1237 | CG7079-RB | 104..871 | 17..784 | 3840 | 100 | Plus |
| CG7079-RA | 934 | CG7079-RA | 104..871 | 17..784 | 3840 | 100 | Plus |
| CG31207-RA | 835 | CG31207-RA | 289..395 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21048112..21048598 | 570..84 | 2435 | 100 | Minus |
| 3R | 32079331 | 3R | 21047828..21048042 | 784..570 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 21048660..21048726 | 83..17 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 21046536..21046642 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:12 has no hits.
BS17530.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:13 Download gff for
BS17530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:00 Download gff for
BS17530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:10 Download gff for
BS17530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 96..861 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:13 Download gff for
BS17530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:25 Download gff for
BS17530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 104..869 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:25 Download gff for
BS17530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21047830..21048041 | 571..782 | 100 | <- | Minus |
| 3R | 21048112..21048598 | 84..570 | 100 | <- | Minus |
| 3R | 21048660..21048726 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:10 Download gff for
BS17530.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16873552..16873763 | 571..782 | 100 | <- | Minus |
| arm_3R | 16873834..16874320 | 84..570 | 100 | <- | Minus |
| arm_3R | 16874382..16874448 | 17..83 | 100 | | Minus |
BS17530.3prime Sequence
798 bp (767 high quality bases) assembled on 2007-05-15
> BS17530.3prime
ATGGTCTAGAAAGCTTTTACTTTGGGTCTTCAGCGGCTAGGAACAGATCA
TCATAGGGTACTTTTTCGAATAAATCCTCAAATAGACTTAAAAAGACGGT
TTCGAACAAACGCAGAATACCCGGCTCCAGTTCGTTCCAGAACTCCACCC
AATTCCGGTTGAACAGATTGTTAACTGCAATCGTTAGGTCTTCATTGTCG
GGAAAGAAGTTGTCTAGCCACATAATCCAGCGGTCCAGCCTTATATTAGG
AACTAGCTCGTAGATCTTTAAATATCTCTTGTTGTTTCTGTACTCGACGC
GCACTTTCAGCGTAAGAACGAATTGAAAATTGAGGAAATCCGACTCCGAC
GTTCCCTGAGAGTGGATATCGACGAACCAGAGCATCCGTCCCTTGGCCAC
ATAGTCGCCCTTGTAAACCAGCCGGGGAATCTTGCCGTGAATTTCGATCT
TGGTGGTGGTGGGATCCTTGTCGAATCCCCTGATCTCCGTGATCGTGGTG
TTCTCGAAGCCATAGTTGATCTGATTGATCAGATTGAAGTAGTACCAGGC
ACCTCCCACCTGGGAATCGTTGACCAGCAGCCAATCCCGCACGGACAGCA
CATTGAAGGGTTTCAGATCGACCTCGGGAATGCCCTTTGGAAAATCTCTC
AGCAGTGCATTTGCCGACTCTACCAGGCACTTTCCGTCACCGAAGTGGCA
TTTTTTCACCTTGGCAGGCAACTTCTGGCACTGCAGTCCACCGAACAGCT
GAATTGTTATAATCACGTAGGCCAGGAAATGCATGTCGACTGATAACT
BS17530.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-PA | 768 | CG7079-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-RB | 1237 | CG7079-RB | 104..871 | 784..17 | 3840 | 100 | Minus |
| CG7079-RA | 934 | CG7079-RA | 104..871 | 784..17 | 3840 | 100 | Minus |
| CG31207-RA | 835 | CG31207-RA | 289..395 | 540..434 | 205 | 79.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:00:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21048112..21048598 | 231..717 | 2435 | 100 | Plus |
| 3R | 32079331 | 3R | 21047828..21048042 | 17..231 | 1075 | 100 | Plus |
| 3R | 32079331 | 3R | 21048660..21048726 | 718..784 | 335 | 100 | Plus |
| 3R | 32079331 | 3R | 21046536..21046642 | 434..540 | 205 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:00:40 has no hits.
BS17530.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:39 Download gff for
BS17530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:04 Download gff for
BS17530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 85..867 | 11..796 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:21:37 Download gff for
BS17530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 93..875 | 11..796 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:21:37 Download gff for
BS17530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21047824..21048041 | 11..230 | 98 | <- | Plus |
| 3R | 21048112..21048598 | 231..717 | 100 | <- | Plus |
| 3R | 21048660..21048737 | 718..796 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:04 Download gff for
BS17530.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16873546..16873763 | 11..230 | 98 | <- | Plus |
| arm_3R | 16873834..16874320 | 231..717 | 100 | <- | Plus |
| arm_3R | 16874382..16874459 | 718..796 | 93 | | Plus |
BS17530.5prime Sequence
798 bp (770 high quality bases) assembled on 2007-05-15
> BS17530.5prime
GAAGTTATCAGTCGACATGCATTTCCTGGCCTACGTGATTATAACAATTC
AGCTGTTCGGTGGACTGCAGTGCCAGAAGTTGCCTGCCAAGGTGAAAAAA
TGCCACTTCGGTGACGGAAAGTGCCTGGTAGAGTCGGCAAATGCACTGCT
GAGAGATTTTCCAAAGGGCATTCCCGAGGTCGATCTGAAACCCTTCAATG
TGCTGTCCGTGCGGGATTGGCTGCTGGTCAACGATTCCCAGGTGGGAGGT
GCCTGGTACTACTTCAATCTGATCAATCAGATCAACTATGGCTTCGAGAA
CACCACGATCACGGAGATCAGGGGATTCGACAAGGATCCCACCACCACCA
AGATCGAAATTCACGGCAAGATTCCCCGGCTGGTTTACAAGGGCGACTAT
GTGGCCAAGGGACGGATGCTCTGGTTCGTCGATATCCACTCTCAGGGAAC
GTCGGAGTCGGATTTCCTCAATTTTCAATTCGTTCTTACGCTGAAAGTGC
GCGTCGAGTACAGAAACAACAAGAGATATTTAAAGATCTACGAGCTAGTT
CCTAATATAAGGCTGGACCGCTGGATTATGTGGCTAGACAACTTCTTTCC
CGACAATGAAGACCTAACGATTGCAGTTAACAATCTGTTCAACCGGAATT
GGGTGGAGTTCTGGAACGAACTGGAGCCGGGTATTCTGCGTTTGTTCGAA
ACCGTCTTTTTAAGTCTATTTGAGGATTTATTCGAAAAAGTACCCTATGA
TGATCTGTTCCTAGCCGCTGAAGACCCAAAGTAAAAGCTTTCTAGACC
BS17530.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-PA | 768 | CG7079-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-RB | 1237 | CG7079-RB | 104..871 | 17..784 | 3840 | 100 | Plus |
| CG7079-RA | 934 | CG7079-RA | 104..871 | 17..784 | 3840 | 100 | Plus |
| CG31207-RA | 835 | CG31207-RA | 289..395 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:24:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21048112..21048598 | 570..84 | 2435 | 100 | Minus |
| 3R | 32079331 | 3R | 21047828..21048042 | 784..570 | 1075 | 100 | Minus |
| 3R | 32079331 | 3R | 21048660..21048726 | 83..17 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 21046536..21046642 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:24:30 has no hits.
BS17530.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:35 Download gff for
BS17530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:05 Download gff for
BS17530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 85..867 | 5..790 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:24:20 Download gff for
BS17530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7079-RA | 93..875 | 5..790 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:24:20 Download gff for
BS17530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21047824..21048041 | 571..790 | 98 | <- | Minus |
| 3R | 21048112..21048598 | 84..570 | 100 | <- | Minus |
| 3R | 21048660..21048737 | 5..83 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:05 Download gff for
BS17530.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16873546..16873763 | 571..790 | 98 | <- | Minus |
| arm_3R | 16873834..16874320 | 84..570 | 100 | <- | Minus |
| arm_3R | 16874382..16874459 | 5..83 | 93 | | Minus |
BS17530.pep Sequence
Translation from 16 to 783
> BS17530.pep
MHFLAYVIITIQLFGGLQCQKLPAKVKKCHFGDGKCLVESANALLRDFPK
GIPEVDLKPFNVLSVRDWLLVNDSQVGGAWYYFNLINQINYGFENTTITE
IRGFDKDPTTTKIEIHGKIPRLVYKGDYVAKGRMLWFVDIHSQGTSESDF
LNFQFVLTLKVRVEYRNNKRYLKIYELVPNIRLDRWIMWLDNFFPDNEDL
TIAVNNLFNRNWVEFWNELEPGILRLFETVFLSLFEDLFEKVPYDDLFLA
AEDPK*
BS17530.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7079-PB | 255 | CG7079-PB | 1..255 | 1..255 | 1371 | 100 | Plus |
| CG7079-PA | 255 | CG7079-PA | 1..255 | 1..255 | 1371 | 100 | Plus |
| CG31207-PA | 258 | CG31207-PA | 7..248 | 7..249 | 824 | 59.3 | Plus |
| CG31189-PB | 258 | CG31189-PB | 23..253 | 22..253 | 597 | 47 | Plus |
| CG11852-PA | 250 | CG11852-PA | 23..248 | 23..249 | 291 | 29.6 | Plus |
