Clone BS17532 Report

Search the DGRC for BS17532

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptCG9722-RA
Protein status:BS17532.pep: full length peptide match
Sequenced Size:827

Clone Sequence Records

BS17532.complete Sequence

827 bp assembled on 2010-02-09

GenBank Submission: KX803695

> BS17532.complete
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATTAGAAGCTTTCTAGACCAT

BS17532.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 795 CG9722-PA 1..795 17..811 3975 100 Plus
CG3814-RD 720 CG3814-PD 535..689 629..783 295 79.4 Plus
CG3814-RC 612 CG3814-PC 427..581 629..783 295 79.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 945 CG9722-RA 71..865 17..811 3975 100 Plus
CG3814-RD 933 CG3814-RD 639..793 629..783 295 79.4 Plus
CG3814-RC 1011 CG3814-RC 717..871 629..783 295 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14152965..14153759 811..17 3975 100 Minus
2R 25286936 2R 12875304..12875458 783..629 295 79.4 Minus
2R 25286936 2R 12877685..12877822 784..647 240 78.3 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:17 has no hits.

BS17532.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:14 Download gff for BS17532.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:02 Download gff for BS17532.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..865 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:12 Download gff for BS17532.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..865 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:14 Download gff for BS17532.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..865 17..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:27 Download gff for BS17532.complete
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..865 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:27 Download gff for BS17532.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14152965..14153759 17..811 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:12 Download gff for BS17532.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9978687..9979481 17..811 100   Minus

BS17532.3prime Sequence

825 bp (825 high quality bases) assembled on 2007-05-15

> BS17532.3prime
ATGGTCTAGAAAGCTTCTAATCGGATCCTCCGATTAATTGCAAAATGTCC
AGGAATATGTTCATTACATCCATGTAAATATTTAGGGCAGCGAATATGTA
CTCCTCGGGACTAATGGAGTACCTATGCTTGCCTCCCATCATCAATTGTG
TATCGTAAACTAAATAAACGGAGAAGAGCAGAGCGCTCAATGAGGCATAT
ATGGTGGTGACCATATGTCCGCCCACGAAGATGGTCACAATTCCAAAGAA
GAGCAGTATTATCAGGCAGCTCACCAGGAGGCCACCCATGACGGTAAAGT
CGTAACGCGTCTGCAGAGCAAAAAGGGTGAGTCCAAGGCAAACTGACGCC
GTGATTAGCACGGCCATGAAAATCTCCATTGGGGCATAACGACAGGCTGC
CACGCCCAGCAGAAAGGACTCGGCTATCGTGAAGGCAGATAGGAAGATGA
AGTTAGCTGGGGTCTGACGACGCAGATCCTCATTGCAGCCCAGAGCCACC
AGAGAGAAGACCACTATTAGTATGGCCACCACAAATATCCAGGTGCTTTC
TGCCACCATCAGACGCACCCGTTTATCAGCAGTAAGTGAAACTATAACCA
CCAGGGAAGTGATCAGTTGGGCCAACAGGATGAGGTACACCTTCCGGATG
AATCCTCGCCGGATGCTGGCGCTGCAGAATCCCAAGCCCTTGTCTGGATC
ATCCTGTCCGATTTCCGATCCGTAAGCTGTATATCTTCCCAGCGGAATAC
ACTCCGCCTGGTGGCTCCGATTTCCATACTGATGTACTGGTTCTTGTAAA
ATATCCAGCATGTCGACTGATAACT

BS17532.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-PA 795 CG9722-RA 1..795 811..17 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:55:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 945 CG9722-RA 71..865 811..17 3975 100 Minus
CG3814-RD 933 CG3814-RD 639..793 199..45 295 79.4 Minus
CG3814-RC 1011 CG3814-RC 717..871 199..45 295 79.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14152965..14153759 17..811 3975 100 Plus
2R 25286936 2R 12875304..12875458 45..199 295 79.4 Plus
2R 25286936 2R 12877685..12877822 44..181 240 78.3 Plus
Blast to na_te.dros performed on 2015-02-04 20:55:01 has no hits.

BS17532.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:24 Download gff for BS17532.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:38 Download gff for BS17532.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..869 13..811 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:47 Download gff for BS17532.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..869 13..811 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:47 Download gff for BS17532.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14152961..14153759 13..811 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:38 Download gff for BS17532.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9978683..9979481 13..811 99   Plus

BS17532.5prime Sequence

825 bp (741 high quality bases) assembled on 2007-05-15

> BS17532.5prime
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATTAGAAGCTTTCTAGACC

BS17532.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-PA 795 CG9722-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-RA 945 CG9722-RA 71..865 17..811 3975 100 Plus
CG3814-RD 933 CG3814-RD 639..793 629..783 295 79.4 Plus
CG3814-RC 1011 CG3814-RC 717..871 629..783 295 79.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14152965..14153759 811..17 3975 100 Minus
2R 25286936 2R 12875304..12875458 783..629 295 79.4 Minus
2R 25286936 2R 12877685..12877822 784..647 240 78.3 Minus
Blast to na_te.dros performed on 2015-02-12 23:37:22 has no hits.

BS17532.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:26 Download gff for BS17532.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:37 Download gff for BS17532.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..869 17..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:08 Download gff for BS17532.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9722-RA 71..869 17..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:08 Download gff for BS17532.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14152961..14153759 17..815 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:37 Download gff for BS17532.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9978683..9979481 17..815 99   Minus

BS17532.pep Sequence

Translation from 16 to 810

> BS17532.pep
MLDILQEPVHQYGNRSHQAECIPLGRYTAYGSEIGQDDPDKGLGFCSASI
RRGFIRKVYLILLAQLITSLVVIVSLTADKRVRLMVAESTWIFVVAILIV
VFSLVALGCNEDLRRQTPANFIFLSAFTIAESFLLGVAACRYAPMEIFMA
VLITASVCLGLTLFALQTRYDFTVMGGLLVSCLIILLFFGIVTIFVGGHM
VTTIYASLSALLFSVYLVYDTQLMMGGKHRYSISPEEYIFAALNIYMDVM
NIFLDILQLIGGSD*

BS17532.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9722-PA 264 CG9722-PA 1..264 1..264 1325 100 Plus
Nmda1-PH 313 CG3798-PH 76..311 25..263 709 55.8 Plus
Nmda1-PG 313 CG3798-PG 76..311 25..263 709 55.8 Plus
Nmda1-PA 313 CG3798-PA 76..311 25..263 709 55.8 Plus
Nmda1-PB 313 CG3798-PB 76..311 25..263 709 55.8 Plus