Clone Sequence Records
BS17532.complete Sequence
827 bp assembled on 2010-02-09
GenBank Submission: KX803695
> BS17532.complete
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATTAGAAGCTTTCTAGACCAT
BS17532.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 795 | CG9722-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG3814-RD | 720 | CG3814-PD | 535..689 | 629..783 | 295 | 79.4 | Plus |
CG3814-RC | 612 | CG3814-PC | 427..581 | 629..783 | 295 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 945 | CG9722-RA | 71..865 | 17..811 | 3975 | 100 | Plus |
CG3814-RD | 933 | CG3814-RD | 639..793 | 629..783 | 295 | 79.4 | Plus |
CG3814-RC | 1011 | CG3814-RC | 717..871 | 629..783 | 295 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14152965..14153759 | 811..17 | 3975 | 100 | Minus |
2R | 25286936 | 2R | 12875304..12875458 | 783..629 | 295 | 79.4 | Minus |
2R | 25286936 | 2R | 12877685..12877822 | 784..647 | 240 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:17 has no hits.
BS17532.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:14 Download gff for
BS17532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:02 Download gff for
BS17532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..865 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:12 Download gff for
BS17532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..865 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:14 Download gff for
BS17532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..865 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:27 Download gff for
BS17532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..865 | 17..811 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:27 Download gff for
BS17532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14152965..14153759 | 17..811 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:12 Download gff for
BS17532.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9978687..9979481 | 17..811 | 100 | | Minus |
BS17532.3prime Sequence
825 bp (825 high quality bases) assembled on 2007-05-15
> BS17532.3prime
ATGGTCTAGAAAGCTTCTAATCGGATCCTCCGATTAATTGCAAAATGTCC
AGGAATATGTTCATTACATCCATGTAAATATTTAGGGCAGCGAATATGTA
CTCCTCGGGACTAATGGAGTACCTATGCTTGCCTCCCATCATCAATTGTG
TATCGTAAACTAAATAAACGGAGAAGAGCAGAGCGCTCAATGAGGCATAT
ATGGTGGTGACCATATGTCCGCCCACGAAGATGGTCACAATTCCAAAGAA
GAGCAGTATTATCAGGCAGCTCACCAGGAGGCCACCCATGACGGTAAAGT
CGTAACGCGTCTGCAGAGCAAAAAGGGTGAGTCCAAGGCAAACTGACGCC
GTGATTAGCACGGCCATGAAAATCTCCATTGGGGCATAACGACAGGCTGC
CACGCCCAGCAGAAAGGACTCGGCTATCGTGAAGGCAGATAGGAAGATGA
AGTTAGCTGGGGTCTGACGACGCAGATCCTCATTGCAGCCCAGAGCCACC
AGAGAGAAGACCACTATTAGTATGGCCACCACAAATATCCAGGTGCTTTC
TGCCACCATCAGACGCACCCGTTTATCAGCAGTAAGTGAAACTATAACCA
CCAGGGAAGTGATCAGTTGGGCCAACAGGATGAGGTACACCTTCCGGATG
AATCCTCGCCGGATGCTGGCGCTGCAGAATCCCAAGCCCTTGTCTGGATC
ATCCTGTCCGATTTCCGATCCGTAAGCTGTATATCTTCCCAGCGGAATAC
ACTCCGCCTGGTGGCTCCGATTTCCATACTGATGTACTGGTTCTTGTAAA
ATATCCAGCATGTCGACTGATAACT
BS17532.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-PA | 795 | CG9722-RA | 1..795 | 811..17 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:55:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 945 | CG9722-RA | 71..865 | 811..17 | 3975 | 100 | Minus |
CG3814-RD | 933 | CG3814-RD | 639..793 | 199..45 | 295 | 79.4 | Minus |
CG3814-RC | 1011 | CG3814-RC | 717..871 | 199..45 | 295 | 79.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:54:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14152965..14153759 | 17..811 | 3975 | 100 | Plus |
2R | 25286936 | 2R | 12875304..12875458 | 45..199 | 295 | 79.4 | Plus |
2R | 25286936 | 2R | 12877685..12877822 | 44..181 | 240 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:55:01 has no hits.
BS17532.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:24 Download gff for
BS17532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-PA | 1..795 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:36:38 Download gff for
BS17532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..869 | 13..811 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:36:47 Download gff for
BS17532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..869 | 13..811 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:36:47 Download gff for
BS17532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14152961..14153759 | 13..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:36:38 Download gff for
BS17532.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9978683..9979481 | 13..811 | 99 | | Plus |
BS17532.5prime Sequence
825 bp (741 high quality bases) assembled on 2007-05-15
> BS17532.5prime
GAAGTTATCAGTCGACATGCTGGATATTTTACAAGAACCAGTACATCAGT
ATGGAAATCGGAGCCACCAGGCGGAGTGTATTCCGCTGGGAAGATATACA
GCTTACGGATCGGAAATCGGACAGGATGATCCAGACAAGGGCTTGGGATT
CTGCAGCGCCAGCATCCGGCGAGGATTCATCCGGAAGGTGTACCTCATCC
TGTTGGCCCAACTGATCACTTCCCTGGTGGTTATAGTTTCACTTACTGCT
GATAAACGGGTGCGTCTGATGGTGGCAGAAAGCACCTGGATATTTGTGGT
GGCCATACTAATAGTGGTCTTCTCTCTGGTGGCTCTGGGCTGCAATGAGG
ATCTGCGTCGTCAGACCCCAGCTAACTTCATCTTCCTATCTGCCTTCACG
ATAGCCGAGTCCTTTCTGCTGGGCGTGGCAGCCTGTCGTTATGCCCCAAT
GGAGATTTTCATGGCCGTGCTAATCACGGCGTCAGTTTGCCTTGGACTCA
CCCTTTTTGCTCTGCAGACGCGTTACGACTTTACCGTCATGGGTGGCCTC
CTGGTGAGCTGCCTGATAATACTGCTCTTCTTTGGAATTGTGACCATCTT
CGTGGGCGGACATATGGTCACCACCATATATGCCTCATTGAGCGCTCTGC
TCTTCTCCGTTTATTTAGTTTACGATACACAATTGATGATGGGAGGCAAG
CATAGGTACTCCATTAGTCCCGAGGAGTACATATTCGCTGCCCTAAATAT
TTACATGGATGTAATGAACATATTCCTGGACATTTTGCAATTAATCGGAG
GATCCGATTAGAAGCTTTCTAGACC
BS17532.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-PA | 795 | CG9722-RA | 1..795 | 17..811 | 3975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:37:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-RA | 945 | CG9722-RA | 71..865 | 17..811 | 3975 | 100 | Plus |
CG3814-RD | 933 | CG3814-RD | 639..793 | 629..783 | 295 | 79.4 | Plus |
CG3814-RC | 1011 | CG3814-RC | 717..871 | 629..783 | 295 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:37:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14152965..14153759 | 811..17 | 3975 | 100 | Minus |
2R | 25286936 | 2R | 12875304..12875458 | 783..629 | 295 | 79.4 | Minus |
2R | 25286936 | 2R | 12877685..12877822 | 784..647 | 240 | 78.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:37:22 has no hits.
BS17532.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:26 Download gff for
BS17532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-PA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:48:37 Download gff for
BS17532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..869 | 17..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:08 Download gff for
BS17532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9722-RA | 71..869 | 17..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:08 Download gff for
BS17532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14152961..14153759 | 17..815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:48:37 Download gff for
BS17532.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 9978683..9979481 | 17..815 | 99 | | Minus |
BS17532.pep Sequence
Translation from 16 to 810
> BS17532.pep
MLDILQEPVHQYGNRSHQAECIPLGRYTAYGSEIGQDDPDKGLGFCSASI
RRGFIRKVYLILLAQLITSLVVIVSLTADKRVRLMVAESTWIFVVAILIV
VFSLVALGCNEDLRRQTPANFIFLSAFTIAESFLLGVAACRYAPMEIFMA
VLITASVCLGLTLFALQTRYDFTVMGGLLVSCLIILLFFGIVTIFVGGHM
VTTIYASLSALLFSVYLVYDTQLMMGGKHRYSISPEEYIFAALNIYMDVM
NIFLDILQLIGGSD*
BS17532.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9722-PA | 264 | CG9722-PA | 1..264 | 1..264 | 1325 | 100 | Plus |
Nmda1-PH | 313 | CG3798-PH | 76..311 | 25..263 | 709 | 55.8 | Plus |
Nmda1-PG | 313 | CG3798-PG | 76..311 | 25..263 | 709 | 55.8 | Plus |
Nmda1-PA | 313 | CG3798-PA | 76..311 | 25..263 | 709 | 55.8 | Plus |
Nmda1-PB | 313 | CG3798-PB | 76..311 | 25..263 | 709 | 55.8 | Plus |