Clone BS17533 Report

Search the DGRC for BS17533

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptgdl-RA
Protein status:BS17533.pep: full length peptide match
Sequenced Size:617

Clone Sequence Records

BS17533.complete Sequence

617 bp assembled on 2010-02-09

GenBank Submission: KX802411

> BS17533.complete
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAATA
AAAGCTTTCTAGACCAT

BS17533.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:28
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-RB 585 CG33756-PB 1..585 17..601 2895 99.7 Plus
gdl-RC 585 CG33756-PC 1..585 17..601 2895 99.7 Plus
gdl-RA 585 CG33756-PA 1..585 17..601 2895 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-ORF39-RA 965 CG33755-RA 292..876 17..601 2895 99.7 Plus
gdl-RB 1175 CG33756-RB 292..876 17..601 2895 99.7 Plus
gdl-RC 1022 CG33756-RC 139..723 17..601 2895 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15509937..15510233 163..459 1470 99.7 Plus
3L 28110227 3L 15509736..15509881 17..162 730 100 Plus
3L 28110227 3L 15510603..15510748 456..601 715 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 03:12:26 has no hits.

BS17533.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:12 Download gff for BS17533.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-RA 1..585 17..601 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:32 Download gff for BS17533.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 292..874 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:06 Download gff for BS17533.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 292..874 17..599 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:12 Download gff for BS17533.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 282..876 5..601 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:12 Download gff for BS17533.complete
Subject Subject Range Query Range Percent Splice Strand
gdl-RC 139..721 17..599 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:12 Download gff for BS17533.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15510605..15510746 458..599 99   Plus
3L 15509736..15509881 17..162 100 -> Plus
3L 15509937..15510231 163..457 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:06 Download gff for BS17533.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15502836..15502981 17..162 100 -> Plus
arm_3L 15503037..15503331 163..457 99 -> Plus
arm_3L 15503705..15503846 458..599 99   Plus

BS17533.5prime Sequence

615 bp (615 high quality bases) assembled on 2007-05-15

> BS17533.5prime
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAATA
AAAGCTTTCTAGACC

BS17533.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG33756-PA 585 gdl-RA 1..585 17..601 2875 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-ORF39-RA 965 CG33755-RA 292..876 17..601 2895 99.7 Plus
gdl-RB 1175 CG33756-RB 292..876 17..601 2895 99.7 Plus
gdl-RC 1022 CG33756-RC 139..723 17..601 2895 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15509937..15510233 163..459 1470 99.7 Plus
3L 28110227 3L 15509736..15509881 17..162 730 100 Plus
3L 28110227 3L 15510603..15510748 456..601 715 99.3 Plus
Blast to na_te.dros performed on 2015-02-10 18:16:48 has no hits.

BS17533.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:35 Download gff for BS17533.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33756-PA 1..585 17..601 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:26 Download gff for BS17533.5prime
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 282..881 5..607 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:22 Download gff for BS17533.5prime
Subject Subject Range Query Range Percent Splice Strand
gdl-RC 129..728 5..607 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:22 Download gff for BS17533.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15509736..15509881 17..162 100 -> Plus
3L 15509937..15510231 163..457 99 -> Plus
3L 15510605..15510753 458..607 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:26 Download gff for BS17533.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15502836..15502981 17..162 100 -> Plus
arm_3L 15503037..15503331 163..457 99 -> Plus
arm_3L 15503705..15503853 458..607 98   Plus

BS17533.3prime Sequence

615 bp (615 high quality bases) assembled on 2007-05-15

> BS17533.3prime
ATGGTCTAGAAAGCTTTTATTTGCCGGGCTCGTATTTTAGCCGGCTCAAA
CGCAAAATGAAGTCCAACAGGAACATTTGTATTTTTATCTCCTTTGGATT
CTCGGTGACATAGAAGCCGGGAACGCCGGCCTTTTGAAGTGTGGATTGTT
GGTCATTAACCTTTTGATCTAGTATTTCGATAATCTTCGTATCCGACTCG
TGTAGTTTCTTAGTGTGCTTTATTTTCATGAGTCCCAAAATGTGGCGCAA
CTCCTCGGGATCCTTGATCTTGCTCCTCCACTCGGCCACTTCTATTTCAT
ACTCGTTCTCCGCCTGCATCCGTATTTTAATCAAGTGTCTTTCGGTTTCG
TGTTGCAGCTCCATTAATGCTTTTACTATTACAAAAATGCCATCGTTTAG
CACACAATTGGCGAGTTCGGTGAGTAGATCGTAGGAAATGCGTGTCTGCA
AGTTTTCGGGAAGTTCCGAATGGTAAGTTCGCAATTGGTCCACCAAAAAA
TAGATTTTGCGTTGTAAAAACTCCGGAGTTGGCTGCTGATACTCCACTAC
TGCCTCACTAGTGTTCGCACTACCTTCGCTGGTTGCCGGTATGTCCGCCA
TGTCGACTGATAACT

BS17533.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG33756-PA 585 gdl-RA 1..585 601..17 2875 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-ORF39-RA 965 CG33755-RA 292..876 601..17 2895 99.7 Minus
gdl-RB 1175 CG33756-RB 292..876 601..17 2895 99.7 Minus
gdl-RC 1022 CG33756-RC 139..723 601..17 2895 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15509937..15510233 455..159 1470 99.7 Minus
3L 28110227 3L 15509736..15509881 601..456 730 100 Minus
3L 28110227 3L 15510603..15510748 162..17 715 99.3 Minus
Blast to na_te.dros performed on 2015-02-11 02:45:22 has no hits.

BS17533.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:32 Download gff for BS17533.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33756-PA 1..585 17..601 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:41 Download gff for BS17533.3prime
Subject Subject Range Query Range Percent Splice Strand
gdl-ORF39-RA 282..881 11..613 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:28 Download gff for BS17533.3prime
Subject Subject Range Query Range Percent Splice Strand
gdl-RC 129..728 11..613 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:28 Download gff for BS17533.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15509937..15510231 161..455 99 -> Minus
3L 15510605..15510753 11..160 98   Minus
3L 15509726..15509881 456..613 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:41 Download gff for BS17533.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15502826..15502981 456..613 96 -> Minus
arm_3L 15503037..15503331 161..455 99 -> Minus
arm_3L 15503705..15503853 11..160 98   Minus

BS17533.pep Sequence

Translation from 16 to 600

> BS17533.pep
MADIPATSEGSANTSEAVVEYQQPTPEFLQRKIYFLVDQLRTYHSELPEN
LQTRISYDLLTELANCVLNDGIFVIVKALMELQHETERHLIKIRMQAENE
YEIEVAEWRSKIKDPEELRHILGLMKIKHTKKLHESDTKIIEILDQKVND
QQSTLQKAGVPGFYVTENPKEIKIQMFLLDFILRLSRLKYEPGK*

BS17533.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:47
Subject Length Description Subject Range Query Range Score Percent Strand
gdl-PB 194 CG33756-PB 1..194 1..194 988 100 Plus
gdl-PC 194 CG33756-PC 1..194 1..194 988 100 Plus
gdl-PA 194 CG33756-PA 1..194 1..194 988 100 Plus