Clone Sequence Records
BS17533.complete Sequence
617 bp assembled on 2010-02-09
GenBank Submission: KX802411
> BS17533.complete
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAATA
AAAGCTTTCTAGACCAT
BS17533.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-RB | 585 | CG33756-PB | 1..585 | 17..601 | 2895 | 99.7 | Plus |
gdl-RC | 585 | CG33756-PC | 1..585 | 17..601 | 2895 | 99.7 | Plus |
gdl-RA | 585 | CG33756-PA | 1..585 | 17..601 | 2895 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-ORF39-RA | 965 | CG33755-RA | 292..876 | 17..601 | 2895 | 99.7 | Plus |
gdl-RB | 1175 | CG33756-RB | 292..876 | 17..601 | 2895 | 99.7 | Plus |
gdl-RC | 1022 | CG33756-RC | 139..723 | 17..601 | 2895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15509937..15510233 | 163..459 | 1470 | 99.7 | Plus |
3L | 28110227 | 3L | 15509736..15509881 | 17..162 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15510603..15510748 | 456..601 | 715 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:12:26 has no hits.
BS17533.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:12 Download gff for
BS17533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:32 Download gff for
BS17533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 292..874 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:06 Download gff for
BS17533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 292..874 | 17..599 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:12 Download gff for
BS17533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 282..876 | 5..601 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:12 Download gff for
BS17533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RC | 139..721 | 17..599 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:12 Download gff for
BS17533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15510605..15510746 | 458..599 | 99 | | Plus |
3L | 15509736..15509881 | 17..162 | 100 | -> | Plus |
3L | 15509937..15510231 | 163..457 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:06 Download gff for
BS17533.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15502836..15502981 | 17..162 | 100 | -> | Plus |
arm_3L | 15503037..15503331 | 163..457 | 99 | -> | Plus |
arm_3L | 15503705..15503846 | 458..599 | 99 | | Plus |
BS17533.5prime Sequence
615 bp (615 high quality bases) assembled on 2007-05-15
> BS17533.5prime
GAAGTTATCAGTCGACATGGCGGACATACCGGCAACCAGCGAAGGTAGTG
CGAACACTAGTGAGGCAGTAGTGGAGTATCAGCAGCCAACTCCGGAGTTT
TTACAACGCAAAATCTATTTTTTGGTGGACCAATTGCGAACTTACCATTC
GGAACTTCCCGAAAACTTGCAGACACGCATTTCCTACGATCTACTCACCG
AACTCGCCAATTGTGTGCTAAACGATGGCATTTTTGTAATAGTAAAAGCA
TTAATGGAGCTGCAACACGAAACCGAAAGACACTTGATTAAAATACGGAT
GCAGGCGGAGAACGAGTATGAAATAGAAGTGGCCGAGTGGAGGAGCAAGA
TCAAGGATCCCGAGGAGTTGCGCCACATTTTGGGACTCATGAAAATAAAG
CACACTAAGAAACTACACGAGTCGGATACGAAGATTATCGAAATACTAGA
TCAAAAGGTTAATGACCAACAATCCACACTTCAAAAGGCCGGCGTTCCCG
GCTTCTATGTCACCGAGAATCCAAAGGAGATAAAAATACAAATGTTCCTG
TTGGACTTCATTTTGCGTTTGAGCCGGCTAAAATACGAGCCCGGCAAATA
AAAGCTTTCTAGACC
BS17533.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33756-PA | 585 | gdl-RA | 1..585 | 17..601 | 2875 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:16:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-ORF39-RA | 965 | CG33755-RA | 292..876 | 17..601 | 2895 | 99.7 | Plus |
gdl-RB | 1175 | CG33756-RB | 292..876 | 17..601 | 2895 | 99.7 | Plus |
gdl-RC | 1022 | CG33756-RC | 139..723 | 17..601 | 2895 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15509937..15510233 | 163..459 | 1470 | 99.7 | Plus |
3L | 28110227 | 3L | 15509736..15509881 | 17..162 | 730 | 100 | Plus |
3L | 28110227 | 3L | 15510603..15510748 | 456..601 | 715 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:16:48 has no hits.
BS17533.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:35 Download gff for
BS17533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33756-PA | 1..585 | 17..601 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:26 Download gff for
BS17533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 282..881 | 5..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:28:22 Download gff for
BS17533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RC | 129..728 | 5..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:28:22 Download gff for
BS17533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15509736..15509881 | 17..162 | 100 | -> | Plus |
3L | 15509937..15510231 | 163..457 | 99 | -> | Plus |
3L | 15510605..15510753 | 458..607 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:26 Download gff for
BS17533.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15502836..15502981 | 17..162 | 100 | -> | Plus |
arm_3L | 15503037..15503331 | 163..457 | 99 | -> | Plus |
arm_3L | 15503705..15503853 | 458..607 | 98 | | Plus |
BS17533.3prime Sequence
615 bp (615 high quality bases) assembled on 2007-05-15
> BS17533.3prime
ATGGTCTAGAAAGCTTTTATTTGCCGGGCTCGTATTTTAGCCGGCTCAAA
CGCAAAATGAAGTCCAACAGGAACATTTGTATTTTTATCTCCTTTGGATT
CTCGGTGACATAGAAGCCGGGAACGCCGGCCTTTTGAAGTGTGGATTGTT
GGTCATTAACCTTTTGATCTAGTATTTCGATAATCTTCGTATCCGACTCG
TGTAGTTTCTTAGTGTGCTTTATTTTCATGAGTCCCAAAATGTGGCGCAA
CTCCTCGGGATCCTTGATCTTGCTCCTCCACTCGGCCACTTCTATTTCAT
ACTCGTTCTCCGCCTGCATCCGTATTTTAATCAAGTGTCTTTCGGTTTCG
TGTTGCAGCTCCATTAATGCTTTTACTATTACAAAAATGCCATCGTTTAG
CACACAATTGGCGAGTTCGGTGAGTAGATCGTAGGAAATGCGTGTCTGCA
AGTTTTCGGGAAGTTCCGAATGGTAAGTTCGCAATTGGTCCACCAAAAAA
TAGATTTTGCGTTGTAAAAACTCCGGAGTTGGCTGCTGATACTCCACTAC
TGCCTCACTAGTGTTCGCACTACCTTCGCTGGTTGCCGGTATGTCCGCCA
TGTCGACTGATAACT
BS17533.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33756-PA | 585 | gdl-RA | 1..585 | 601..17 | 2875 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-ORF39-RA | 965 | CG33755-RA | 292..876 | 601..17 | 2895 | 99.7 | Minus |
gdl-RB | 1175 | CG33756-RB | 292..876 | 601..17 | 2895 | 99.7 | Minus |
gdl-RC | 1022 | CG33756-RC | 139..723 | 601..17 | 2895 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15509937..15510233 | 455..159 | 1470 | 99.7 | Minus |
3L | 28110227 | 3L | 15509736..15509881 | 601..456 | 730 | 100 | Minus |
3L | 28110227 | 3L | 15510603..15510748 | 162..17 | 715 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:45:22 has no hits.
BS17533.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:32 Download gff for
BS17533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33756-PA | 1..585 | 17..601 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:41 Download gff for
BS17533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-ORF39-RA | 282..881 | 11..613 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:28:28 Download gff for
BS17533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gdl-RC | 129..728 | 11..613 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:28:28 Download gff for
BS17533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15509937..15510231 | 161..455 | 99 | -> | Minus |
3L | 15510605..15510753 | 11..160 | 98 | | Minus |
3L | 15509726..15509881 | 456..613 | 96 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:41 Download gff for
BS17533.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15502826..15502981 | 456..613 | 96 | -> | Minus |
arm_3L | 15503037..15503331 | 161..455 | 99 | -> | Minus |
arm_3L | 15503705..15503853 | 11..160 | 98 | | Minus |
BS17533.pep Sequence
Translation from 16 to 600
> BS17533.pep
MADIPATSEGSANTSEAVVEYQQPTPEFLQRKIYFLVDQLRTYHSELPEN
LQTRISYDLLTELANCVLNDGIFVIVKALMELQHETERHLIKIRMQAENE
YEIEVAEWRSKIKDPEELRHILGLMKIKHTKKLHESDTKIIEILDQKVND
QQSTLQKAGVPGFYVTENPKEIKIQMFLLDFILRLSRLKYEPGK*
BS17533.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gdl-PB | 194 | CG33756-PB | 1..194 | 1..194 | 988 | 100 | Plus |
gdl-PC | 194 | CG33756-PC | 1..194 | 1..194 | 988 | 100 | Plus |
gdl-PA | 194 | CG33756-PA | 1..194 | 1..194 | 988 | 100 | Plus |