Clone BS17534 Report

Search the DGRC for BS17534

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG6628-RA
Protein status:BS17534.pep: full length peptide match
Sequenced Size:866

Clone Sequence Records

BS17534.complete Sequence

866 bp assembled on 2010-02-09

GenBank Submission: KX802918

> BS17534.complete
GAAGTTATCAGTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAGC
CCGCAGGACATCCGCTATTCCTTTTGGCCTGCAACTATGCCAGCAATTAT
GTTCCCGACTGGCCCATCTACAAGGAGAAAGCCATTGGCTGTCAGTCCGG
TTCCGACCTCAAATATCCATCGCTTTGCAAGGCTGGTGAGGAATACCAGG
ATCTTATCGGGCAGCAGGGCTCCAAGGGGAAGAGATTTTGGACGCTGTAG
AAGCTTTCTAGACCAT

BS17534.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 834 CG6628-PA 1..834 17..850 4170 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 1096 CG6628-RA 3..837 16..850 4175 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10166403..10166809 573..167 2035 100 Minus
3L 28110227 3L 10166068..10166344 850..574 1385 100 Minus
3L 28110227 3L 10166870..10167021 167..16 760 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:10:22 has no hits.

BS17534.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:15 Download gff for BS17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..834 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:04 Download gff for BS17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 6..839 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:15 Download gff for BS17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 4..837 17..850 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:16 Download gff for BS17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..839 14..850 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:29 Download gff for BS17534.complete
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 4..837 17..850 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:29 Download gff for BS17534.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10166068..10166344 574..850 100 <- Minus
3L 10166403..10166809 167..573 100 <- Minus
3L 10166871..10167020 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:15 Download gff for BS17534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10159168..10159444 574..850 100 <- Minus
arm_3L 10159503..10159909 167..573 100 <- Minus
arm_3L 10159971..10160120 17..166 100   Minus

BS17534.3prime Sequence

864 bp (824 high quality bases) assembled on 2007-05-15

> BS17534.3prime
ATGGTCTAGAAAGCTTCTACAGCGTCCAAAATCTCTTCCCCTTGGAGCCC
TGCTGCCCGATAAGATCCTGGTATTCCTCACCAGCCTTGCAAAGCGATGG
ATATTTGAGGTCGGAACCGGACTGACAGCCAATGGCTTTCTCCTTGTAGA
TGGGCCAGTCGGGAACATAATTGCTGGCATAGTTGCAGGCCAAAAGGAAT
AGCGGATGTCCTGCGGGCTTCTCGAATCTCAAGGCGGCACATCCCACATG
GGTGTTGTTGTCACGGGCCATGACGGCAAAATTGCGAATGGAATCTCCCA
ATTTTCCTTTGGGAAAACGCTGCAATTGCTCTTTTGTGATATTGATACTC
TGATTCCACCAGCCTCCAATAGACTCCTTAACAAGGCACTCGTCGGTGTG
ATTTCCGTCTTCAGGTAGCAGGGTTATGTTGACCAAAGCCAAGTTCTGAC
CAGAGTTATGGAAATCTGGAGTGTTGTGACAAGAATCGTGCTGCAGAACA
CACTGCTTCACATTCAGTGTGGCCAGATCGGCCAGTTCTGAATGCCACTG
CAGTGTGGCCATGCGATCGGGCTTAGGTAAATTGATGATTTTTCCCGAAG
CAAGGACATTTCGCAATGCATTGTGTTCACCCAGGATCAGGTCCTGCAGG
CCAGTGAGATTGACCAAATGGGCGTCGGGAGAACACTGTTTGCCCAACTC
TCCTTTGTTCTTGCAGGCAATGTGTTTTTTTAGAGAGGGGCACAATCCAC
TCTGACAATAGTCCGTTGGGGGAGCAGTCGCATTGTCCTGGCTGAATGCA
ACCTGCAGGAATCCAAAGAGCATAAGGGCCACTACCAATTCCGTAGACAT
GTCGACTGATAACT

BS17534.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 834 CG6628-RA 1..834 850..17 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 1096 CG6628-RA 3..837 851..17 4175 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10166403..10166809 294..700 2035 100 Plus
3L 28110227 3L 10166068..10166344 17..293 1385 100 Plus
3L 28110227 3L 10166870..10167021 700..851 760 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:15:16 has no hits.

BS17534.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:25 Download gff for BS17534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-PA 1..834 17..850 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:59 Download gff for BS17534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..840 14..852 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:11 Download gff for BS17534.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..840 14..852 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:11 Download gff for BS17534.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10166065..10166344 14..293 99 <- Plus
3L 10166403..10166809 294..700 100 <- Plus
3L 10166871..10167031 701..864 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:59 Download gff for BS17534.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10159165..10159444 14..293 99 <- Plus
arm_3L 10159503..10159909 294..700 100 <- Plus
arm_3L 10159971..10160131 701..864 96   Plus

BS17534.5prime Sequence

868 bp (795 high quality bases) assembled on 2007-05-15

> BS17534.5prime
GAAGTTATCACTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAGC
CCGCAGGACATCCGCTATTCCTTTTGGCCTGCAACTATGCCAGCAATTAT
GTTCCCGACTGGCCCATCTACAAGGAGAAAGCCATTGGCTGTCAGTCCGG
TTCCGACCTCAAATATCCATCGCTTTGCAAGGCTGGTGAGGAATACCAGG
ATCTTATCGGGCAGCAGGGCTCCAAGGGGAAGAGATTTTGGACGCTGTAA
AAGCTTTCTAGACCATTC

BS17534.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 834 CG6628-RA 1..833 17..849 4165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-RA 1096 CG6628-RA 3..836 16..849 4170 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10166403..10166809 573..167 2035 100 Minus
3L 28110227 3L 10166069..10166344 849..574 1380 100 Minus
3L 28110227 3L 10166870..10167021 167..16 760 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:47:17 has no hits.

BS17534.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:21 Download gff for BS17534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-PA 1..834 17..850 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:38 Download gff for BS17534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..840 15..853 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:06 Download gff for BS17534.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6628-RA 1..840 15..853 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:06 Download gff for BS17534.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10166065..10166344 574..853 99 <- Minus
3L 10166403..10166809 167..573 100 <- Minus
3L 10166871..10167030 6..166 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:38 Download gff for BS17534.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10159165..10159444 574..853 99 <- Minus
arm_3L 10159503..10159909 167..573 100 <- Minus
arm_3L 10159971..10160130 6..166 97   Minus

BS17534.pep Sequence

Translation from 16 to 849

> BS17534.pep
MSTELVVALMLFGFLQVAFSQDNATAPPTDYCQSGLCPSLKKHIACKNKG
ELGKQCSPDAHLVNLTGLQDLILGEHNALRNVLASGKIINLPKPDRMATL
QWHSELADLATLNVKQCVLQHDSCHNTPDFHNSGQNLALVNITLLPEDGN
HTDECLVKESIGGWWNQSINITKEQLQRFPKGKLGDSIRNFAVMARDNNT
HVGCAALRFEKPAGHPLFLLACNYASNYVPDWPIYKEKAIGCQSGSDLKY
PSLCKAGEEYQDLIGQQGSKGKRFWTL*

BS17534.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6628-PA 277 CG6628-PA 1..277 1..277 1496 100 Plus
CG9822-PA 263 CG9822-PA 19..256 24..260 435 41.1 Plus
scpr-A-PA 264 CG5207-PA 16..254 24..262 394 38.5 Plus
scpr-B-PA 262 CG17210-PA 20..252 30..262 393 39.5 Plus
scpr-C-PB 262 CG5106-PB 20..252 30..262 390 39.1 Plus