Clone Sequence Records
BS17534.complete Sequence
866 bp assembled on 2010-02-09
GenBank Submission: KX802918
> BS17534.complete
GAAGTTATCAGTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAGC
CCGCAGGACATCCGCTATTCCTTTTGGCCTGCAACTATGCCAGCAATTAT
GTTCCCGACTGGCCCATCTACAAGGAGAAAGCCATTGGCTGTCAGTCCGG
TTCCGACCTCAAATATCCATCGCTTTGCAAGGCTGGTGAGGAATACCAGG
ATCTTATCGGGCAGCAGGGCTCCAAGGGGAAGAGATTTTGGACGCTGTAG
AAGCTTTCTAGACCAT
BS17534.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 834 | CG6628-PA | 1..834 | 17..850 | 4170 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 1096 | CG6628-RA | 3..837 | 16..850 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10166403..10166809 | 573..167 | 2035 | 100 | Minus |
3L | 28110227 | 3L | 10166068..10166344 | 850..574 | 1385 | 100 | Minus |
3L | 28110227 | 3L | 10166870..10167021 | 167..16 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:10:22 has no hits.
BS17534.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:15 Download gff for
BS17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..834 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:04 Download gff for
BS17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 6..839 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:15 Download gff for
BS17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 4..837 | 17..850 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:16 Download gff for
BS17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..839 | 14..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:29 Download gff for
BS17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 4..837 | 17..850 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:29 Download gff for
BS17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10166068..10166344 | 574..850 | 100 | <- | Minus |
3L | 10166403..10166809 | 167..573 | 100 | <- | Minus |
3L | 10166871..10167020 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:15 Download gff for
BS17534.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10159168..10159444 | 574..850 | 100 | <- | Minus |
arm_3L | 10159503..10159909 | 167..573 | 100 | <- | Minus |
arm_3L | 10159971..10160120 | 17..166 | 100 | | Minus |
BS17534.3prime Sequence
864 bp (824 high quality bases) assembled on 2007-05-15
> BS17534.3prime
ATGGTCTAGAAAGCTTCTACAGCGTCCAAAATCTCTTCCCCTTGGAGCCC
TGCTGCCCGATAAGATCCTGGTATTCCTCACCAGCCTTGCAAAGCGATGG
ATATTTGAGGTCGGAACCGGACTGACAGCCAATGGCTTTCTCCTTGTAGA
TGGGCCAGTCGGGAACATAATTGCTGGCATAGTTGCAGGCCAAAAGGAAT
AGCGGATGTCCTGCGGGCTTCTCGAATCTCAAGGCGGCACATCCCACATG
GGTGTTGTTGTCACGGGCCATGACGGCAAAATTGCGAATGGAATCTCCCA
ATTTTCCTTTGGGAAAACGCTGCAATTGCTCTTTTGTGATATTGATACTC
TGATTCCACCAGCCTCCAATAGACTCCTTAACAAGGCACTCGTCGGTGTG
ATTTCCGTCTTCAGGTAGCAGGGTTATGTTGACCAAAGCCAAGTTCTGAC
CAGAGTTATGGAAATCTGGAGTGTTGTGACAAGAATCGTGCTGCAGAACA
CACTGCTTCACATTCAGTGTGGCCAGATCGGCCAGTTCTGAATGCCACTG
CAGTGTGGCCATGCGATCGGGCTTAGGTAAATTGATGATTTTTCCCGAAG
CAAGGACATTTCGCAATGCATTGTGTTCACCCAGGATCAGGTCCTGCAGG
CCAGTGAGATTGACCAAATGGGCGTCGGGAGAACACTGTTTGCCCAACTC
TCCTTTGTTCTTGCAGGCAATGTGTTTTTTTAGAGAGGGGCACAATCCAC
TCTGACAATAGTCCGTTGGGGGAGCAGTCGCATTGTCCTGGCTGAATGCA
ACCTGCAGGAATCCAAAGAGCATAAGGGCCACTACCAATTCCGTAGACAT
GTCGACTGATAACT
BS17534.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-PA | 834 | CG6628-RA | 1..834 | 850..17 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:15:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 1096 | CG6628-RA | 3..837 | 851..17 | 4175 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10166403..10166809 | 294..700 | 2035 | 100 | Plus |
3L | 28110227 | 3L | 10166068..10166344 | 17..293 | 1385 | 100 | Plus |
3L | 28110227 | 3L | 10166870..10167021 | 700..851 | 760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:15:16 has no hits.
BS17534.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:25 Download gff for
BS17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-PA | 1..834 | 17..850 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:20:59 Download gff for
BS17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..840 | 14..852 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:17:11 Download gff for
BS17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..840 | 14..852 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:17:11 Download gff for
BS17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10166065..10166344 | 14..293 | 99 | <- | Plus |
3L | 10166403..10166809 | 294..700 | 100 | <- | Plus |
3L | 10166871..10167031 | 701..864 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:20:59 Download gff for
BS17534.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10159165..10159444 | 14..293 | 99 | <- | Plus |
arm_3L | 10159503..10159909 | 294..700 | 100 | <- | Plus |
arm_3L | 10159971..10160131 | 701..864 | 96 | | Plus |
BS17534.5prime Sequence
868 bp (795 high quality bases) assembled on 2007-05-15
> BS17534.5prime
GAAGTTATCACTCGACATGTCTACGGAATTGGTAGTGGCCCTTATGCTCT
TTGGATTCCTGCAGGTTGCATTCAGCCAGGACAATGCGACTGCTCCCCCA
ACGGACTATTGTCAGAGTGGATTGTGCCCCTCTCTAAAAAAACACATTGC
CTGCAAGAACAAAGGAGAGTTGGGCAAACAGTGTTCTCCCGACGCCCATT
TGGTCAATCTCACTGGCCTGCAGGACCTGATCCTGGGTGAACACAATGCA
TTGCGAAATGTCCTTGCTTCGGGAAAAATCATCAATTTACCTAAGCCCGA
TCGCATGGCCACACTGCAGTGGCATTCAGAACTGGCCGATCTGGCCACAC
TGAATGTGAAGCAGTGTGTTCTGCAGCACGATTCTTGTCACAACACTCCA
GATTTCCATAACTCTGGTCAGAACTTGGCTTTGGTCAACATAACCCTGCT
ACCTGAAGACGGAAATCACACCGACGAGTGCCTTGTTAAGGAGTCTATTG
GAGGCTGGTGGAATCAGAGTATCAATATCACAAAAGAGCAATTGCAGCGT
TTTCCCAAAGGAAAATTGGGAGATTCCATTCGCAATTTTGCCGTCATGGC
CCGTGACAACAACACCCATGTGGGATGTGCCGCCTTGAGATTCGAGAAGC
CCGCAGGACATCCGCTATTCCTTTTGGCCTGCAACTATGCCAGCAATTAT
GTTCCCGACTGGCCCATCTACAAGGAGAAAGCCATTGGCTGTCAGTCCGG
TTCCGACCTCAAATATCCATCGCTTTGCAAGGCTGGTGAGGAATACCAGG
ATCTTATCGGGCAGCAGGGCTCCAAGGGGAAGAGATTTTGGACGCTGTAA
AAGCTTTCTAGACCATTC
BS17534.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-PA | 834 | CG6628-RA | 1..833 | 17..849 | 4165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-RA | 1096 | CG6628-RA | 3..836 | 16..849 | 4170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10166403..10166809 | 573..167 | 2035 | 100 | Minus |
3L | 28110227 | 3L | 10166069..10166344 | 849..574 | 1380 | 100 | Minus |
3L | 28110227 | 3L | 10166870..10167021 | 167..16 | 760 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:47:17 has no hits.
BS17534.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:21 Download gff for
BS17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:38 Download gff for
BS17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..840 | 15..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:06 Download gff for
BS17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6628-RA | 1..840 | 15..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:06 Download gff for
BS17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10166065..10166344 | 574..853 | 99 | <- | Minus |
3L | 10166403..10166809 | 167..573 | 100 | <- | Minus |
3L | 10166871..10167030 | 6..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:38 Download gff for
BS17534.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10159165..10159444 | 574..853 | 99 | <- | Minus |
arm_3L | 10159503..10159909 | 167..573 | 100 | <- | Minus |
arm_3L | 10159971..10160130 | 6..166 | 97 | | Minus |
BS17534.pep Sequence
Translation from 16 to 849
> BS17534.pep
MSTELVVALMLFGFLQVAFSQDNATAPPTDYCQSGLCPSLKKHIACKNKG
ELGKQCSPDAHLVNLTGLQDLILGEHNALRNVLASGKIINLPKPDRMATL
QWHSELADLATLNVKQCVLQHDSCHNTPDFHNSGQNLALVNITLLPEDGN
HTDECLVKESIGGWWNQSINITKEQLQRFPKGKLGDSIRNFAVMARDNNT
HVGCAALRFEKPAGHPLFLLACNYASNYVPDWPIYKEKAIGCQSGSDLKY
PSLCKAGEEYQDLIGQQGSKGKRFWTL*
BS17534.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6628-PA | 277 | CG6628-PA | 1..277 | 1..277 | 1496 | 100 | Plus |
CG9822-PA | 263 | CG9822-PA | 19..256 | 24..260 | 435 | 41.1 | Plus |
scpr-A-PA | 264 | CG5207-PA | 16..254 | 24..262 | 394 | 38.5 | Plus |
scpr-B-PA | 262 | CG17210-PA | 20..252 | 30..262 | 393 | 39.5 | Plus |
scpr-C-PB | 262 | CG5106-PB | 20..252 | 30..262 | 390 | 39.1 | Plus |