Clone BS17535 Report

Search the DGRC for BS17535

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG9458-RA
Protein status:BS17535.pep: full length peptide match
Sequenced Size:827

Clone Sequence Records

BS17535.complete Sequence

827 bp assembled on 2010-02-09

GenBank Submission: KX803360

> BS17535.complete
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCCTAAAGCAACCGGACTGTCCATCAGCCCGG
TTCTCGGCGACCTGTGCCGGCAGCATCTCCGTTGTGTTCATCATCTTATT
TAGCAACTTCTATTTTCATGCCTATATTCGACCCAAGAAAAGGAAACAGA
AAAACATCTAAAAGCTTTCTAGACCAT

BS17535.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 795 CG9458-PA 1..795 17..811 3975 100 Plus
CG9459-RA 798 CG9459-PA 184..625 200..641 845 79.4 Plus
CG8534-RA 798 CG8534-PA 268..426 287..445 390 83 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 900 CG9458-RA 11..805 17..811 3975 100 Plus
CG9459-RA 901 CG9459-RA 213..654 200..641 845 79.4 Plus
CG8534-RA 990 CG8534-RA 326..484 287..445 390 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9819009..9819575 811..245 2835 100 Minus
3R 32079331 3R 9819639..9819867 245..17 1145 100 Minus
3R 32079331 3R 9817675..9818069 641..247 790 80 Minus
3R 32079331 3R 9813275..9813433 287..445 390 83 Plus
Blast to na_te.dros performed on 2014-11-28 03:04:29 has no hits.

BS17535.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:08 Download gff for BS17535.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:39 Download gff for BS17535.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 16..803 22..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:29 Download gff for BS17535.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 16..803 22..809 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:08 Download gff for BS17535.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..808 9..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:04 Download gff for BS17535.complete
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 16..803 22..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:04 Download gff for BS17535.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9819011..9819575 245..809 100 <- Minus
3R 9819640..9819862 22..244 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:29 Download gff for BS17535.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5644733..5645297 245..809 100 <- Minus
arm_3R 5645362..5645584 22..244 100   Minus

BS17535.3prime Sequence

825 bp (824 high quality bases) assembled on 2007-05-15

> BS17535.3prime
ATGGTCTAGAAAGCTTTTAGATGTTTTTCTGTTTCCTTTTCTTGGGTCGA
ATATAGGCATGAAAATAGAAGTTGCTAAATAAGATGATGAACACAACGGA
GATGCTGCCGGCACAGGTCGCCGAGAACCGGGCTGATGGACAGTCCGGTT
GCTTTAGGGTGTAGATACTATGCCCCAGAACGATTCCAAACTGGATGAGC
TGAACGATAGTGATGTACTTCTTCCACCACAGATCGCCCTTCGAATCGCG
ATTGAGCGACGACTGATAGTAGTAGCTGTACATCATGATGTGCACGACGA
CGTTGAAGAAGCACATAAAGAACCCATGACCACCGTATCCGTAGTAGTAC
AGATACATAAAGCTGAAGTACAGCATGTACATGTGATGGAAGACGTGCAG
AAAGGATATCTGGCGATCCTTCTTTCGCAGCACAAAGAAGACCGTCTCCA
GCAGATCGAGCAGCTTATTGAAGAAGTACGAGTACGTAAGCCAGCGCTCC
CAGGTCTTGTACTCATGATCCGGCGGCAGGTTCTTGATGCACTTAAAGTT
ATAGTCTCCGGGTCCCAGCATGAAGTGGACAGCAAAAAAGCACATGATGA
CATTGTACACGATCTGCATGATGTTGTACGCCTTTATCAGACCGCGAAGG
TCAAAGGGCTTTCGATTCCGCATGATCTTTGGACCCGCTATCTTTACGAA
GAACAGGTAGGTGGCCAATACCATCAGGACGGGCTTGTGGCTGGCCAGGA
GTGGCAGGCGCACAGGATCGGGTGGGGATTTGCCCAAAAAGTCCACTAGA
TCACCCAACATGTCGACTGATAACT

BS17535.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-PA 795 CG9458-RA 1..795 811..17 3975 100 Minus
CG8534-PA 798 CG8534-RA 352..422 457..387 255 94.3 Minus
CG9459-PA 798 CG9459-RA 504..563 308..249 150 90 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:57:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 900 CG9458-RA 11..805 811..17 3975 100 Minus
CG9459-RA 901 CG9459-RA 213..654 628..187 845 79.4 Minus
CG8534-RA 990 CG8534-RA 326..484 541..383 390 83 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:57:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9819009..9819575 17..583 2835 100 Plus
3R 32079331 3R 9819639..9819867 583..811 1145 100 Plus
3R 32079331 3R 9817675..9818069 187..581 790 80 Plus
3R 32079331 3R 9813275..9813433 541..383 390 83 Minus
Blast to na_te.dros performed on 2015-02-04 20:57:25 has no hits.

BS17535.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:34 Download gff for BS17535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:06 Download gff for BS17535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..808 12..819 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:19 Download gff for BS17535.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..808 12..819 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:19 Download gff for BS17535.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9819006..9819575 12..583 99 <- Plus
3R 9819640..9819875 584..819 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:06 Download gff for BS17535.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5644728..5645297 12..583 99 <- Plus
arm_3R 5645362..5645597 584..819 98   Plus

BS17535.5prime Sequence

824 bp (783 high quality bases) assembled on 2007-05-15

> BS17535.5prime
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCCTAAAGCAACCGGACTGTCCATCAGCCCGG
TTCTCGGCGACCTGTGCCGGCAGCATCTCCGTTGTGTTCATCATCTTATT
TAGCAACTTCTATTTTCATGCCTATATTCGACCCAGAAAAGGAAACAGAA
AAACATCTAAAAGCTTTCTAGACC

BS17535.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-PA 795 CG9458-RA 1..769 17..785 3845 100 Plus
CG8534-PA 798 CG8534-RA 352..422 371..441 255 94.3 Plus
CG9459-PA 798 CG9459-RA 504..563 520..579 150 90 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-RA 900 CG9458-RA 11..805 17..810 3950 99.9 Plus
CG9459-RA 901 CG9459-RA 213..654 200..641 845 79.4 Plus
CG8534-RA 990 CG8534-RA 326..484 287..445 390 83 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9819009..9819575 810..245 2785 99.8 Minus
3R 32079331 3R 9819639..9819867 245..17 1145 100 Minus
3R 32079331 3R 9817675..9818069 641..247 790 80 Minus
3R 32079331 3R 9813275..9813433 287..445 390 83 Plus
Blast to na_te.dros performed on 2015-02-10 17:48:15 has no hits.

BS17535.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:31 Download gff for BS17535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-PA 1..795 17..810 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:45 Download gff for BS17535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..808 9..815 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:01 Download gff for BS17535.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9458-RA 3..808 9..815 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:01 Download gff for BS17535.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9819006..9819575 245..815 99 <- Minus
3R 9819640..9819875 9..244 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:45 Download gff for BS17535.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5644728..5645297 245..815 99 <- Minus
arm_3R 5645362..5645597 9..244 98   Minus

BS17535.pep Sequence

Translation from 16 to 810

> BS17535.pep
MLGDLVDFLGKSPPDPVRLPLLASHKPVLMVLATYLFFVKIAGPKIMRNR
KPFDLRGLIKAYNIMQIVYNVIMCFFAVHFMLGPGDYNFKCIKNLPPDHE
YKTWERWLTYSYFFNKLLDLLETVFFVLRKKDRQISFLHVFHHMYMLYFS
FMYLYYYGYGGHGFFMCFFNVVVHIMMYSYYYQSSLNRDSKGDLWWKKYI
TIVQLIQFGIVLGHSIYTLKQPDCPSARFSATCAGSISVVFIILFSNFYF
HAYIRPKKRKQKNI*

BS17535.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG9458-PA 264 CG9458-PA 1..264 1..264 1436 100 Plus
CG9459-PA 265 CG9459-PA 1..260 1..260 1025 69.6 Plus
CG8534-PA 265 CG8534-PA 14..252 15..254 710 56.2 Plus
eloF-PA 257 CG16905-PA 3..253 12..262 679 49.4 Plus
CG16904-PA 262 CG16904-PA 11..258 15..262 645 46 Plus