Clone Sequence Records
BS17535.complete Sequence
827 bp assembled on 2010-02-09
GenBank Submission: KX803360
> BS17535.complete
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCCTAAAGCAACCGGACTGTCCATCAGCCCGG
TTCTCGGCGACCTGTGCCGGCAGCATCTCCGTTGTGTTCATCATCTTATT
TAGCAACTTCTATTTTCATGCCTATATTCGACCCAAGAAAAGGAAACAGA
AAAACATCTAAAAGCTTTCTAGACCAT
BS17535.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 795 | CG9458-PA | 1..795 | 17..811 | 3975 | 100 | Plus |
CG9459-RA | 798 | CG9459-PA | 184..625 | 200..641 | 845 | 79.4 | Plus |
CG8534-RA | 798 | CG8534-PA | 268..426 | 287..445 | 390 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:04:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 900 | CG9458-RA | 11..805 | 17..811 | 3975 | 100 | Plus |
CG9459-RA | 901 | CG9459-RA | 213..654 | 200..641 | 845 | 79.4 | Plus |
CG8534-RA | 990 | CG8534-RA | 326..484 | 287..445 | 390 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:04:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9819009..9819575 | 811..245 | 2835 | 100 | Minus |
3R | 32079331 | 3R | 9819639..9819867 | 245..17 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 9817675..9818069 | 641..247 | 790 | 80 | Minus |
3R | 32079331 | 3R | 9813275..9813433 | 287..445 | 390 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:04:29 has no hits.
BS17535.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:22:08 Download gff for
BS17535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 1..795 | 17..811 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:14:39 Download gff for
BS17535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 16..803 | 22..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:34:29 Download gff for
BS17535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 16..803 | 22..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:22:08 Download gff for
BS17535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..808 | 9..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:42:04 Download gff for
BS17535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 16..803 | 22..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:42:04 Download gff for
BS17535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9819011..9819575 | 245..809 | 100 | <- | Minus |
3R | 9819640..9819862 | 22..244 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:34:29 Download gff for
BS17535.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5644733..5645297 | 245..809 | 100 | <- | Minus |
arm_3R | 5645362..5645584 | 22..244 | 100 | | Minus |
BS17535.3prime Sequence
825 bp (824 high quality bases) assembled on 2007-05-15
> BS17535.3prime
ATGGTCTAGAAAGCTTTTAGATGTTTTTCTGTTTCCTTTTCTTGGGTCGA
ATATAGGCATGAAAATAGAAGTTGCTAAATAAGATGATGAACACAACGGA
GATGCTGCCGGCACAGGTCGCCGAGAACCGGGCTGATGGACAGTCCGGTT
GCTTTAGGGTGTAGATACTATGCCCCAGAACGATTCCAAACTGGATGAGC
TGAACGATAGTGATGTACTTCTTCCACCACAGATCGCCCTTCGAATCGCG
ATTGAGCGACGACTGATAGTAGTAGCTGTACATCATGATGTGCACGACGA
CGTTGAAGAAGCACATAAAGAACCCATGACCACCGTATCCGTAGTAGTAC
AGATACATAAAGCTGAAGTACAGCATGTACATGTGATGGAAGACGTGCAG
AAAGGATATCTGGCGATCCTTCTTTCGCAGCACAAAGAAGACCGTCTCCA
GCAGATCGAGCAGCTTATTGAAGAAGTACGAGTACGTAAGCCAGCGCTCC
CAGGTCTTGTACTCATGATCCGGCGGCAGGTTCTTGATGCACTTAAAGTT
ATAGTCTCCGGGTCCCAGCATGAAGTGGACAGCAAAAAAGCACATGATGA
CATTGTACACGATCTGCATGATGTTGTACGCCTTTATCAGACCGCGAAGG
TCAAAGGGCTTTCGATTCCGCATGATCTTTGGACCCGCTATCTTTACGAA
GAACAGGTAGGTGGCCAATACCATCAGGACGGGCTTGTGGCTGGCCAGGA
GTGGCAGGCGCACAGGATCGGGTGGGGATTTGCCCAAAAAGTCCACTAGA
TCACCCAACATGTCGACTGATAACT
BS17535.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-PA | 795 | CG9458-RA | 1..795 | 811..17 | 3975 | 100 | Minus |
CG8534-PA | 798 | CG8534-RA | 352..422 | 457..387 | 255 | 94.3 | Minus |
CG9459-PA | 798 | CG9459-RA | 504..563 | 308..249 | 150 | 90 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:57:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 900 | CG9458-RA | 11..805 | 811..17 | 3975 | 100 | Minus |
CG9459-RA | 901 | CG9459-RA | 213..654 | 628..187 | 845 | 79.4 | Minus |
CG8534-RA | 990 | CG8534-RA | 326..484 | 541..383 | 390 | 83 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:57:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9819009..9819575 | 17..583 | 2835 | 100 | Plus |
3R | 32079331 | 3R | 9819639..9819867 | 583..811 | 1145 | 100 | Plus |
3R | 32079331 | 3R | 9817675..9818069 | 187..581 | 790 | 80 | Plus |
3R | 32079331 | 3R | 9813275..9813433 | 541..383 | 390 | 83 | Minus |
Blast to na_te.dros performed on 2015-02-04 20:57:25 has no hits.
BS17535.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:34 Download gff for
BS17535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-PA | 1..795 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:37:06 Download gff for
BS17535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..808 | 12..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 00:37:19 Download gff for
BS17535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..808 | 12..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 00:37:19 Download gff for
BS17535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9819006..9819575 | 12..583 | 99 | <- | Plus |
3R | 9819640..9819875 | 584..819 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:37:06 Download gff for
BS17535.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5644728..5645297 | 12..583 | 99 | <- | Plus |
arm_3R | 5645362..5645597 | 584..819 | 98 | | Plus |
BS17535.5prime Sequence
824 bp (783 high quality bases) assembled on 2007-05-15
> BS17535.5prime
GAAGTTATCAGTCGACATGTTGGGTGATCTAGTGGACTTTTTGGGCAAAT
CCCCACCCGATCCTGTGCGCCTGCCACTCCTGGCCAGCCACAAGCCCGTC
CTGATGGTATTGGCCACCTACCTGTTCTTCGTAAAGATAGCGGGTCCAAA
GATCATGCGGAATCGAAAGCCCTTTGACCTTCGCGGTCTGATAAAGGCGT
ACAACATCATGCAGATCGTGTACAATGTCATCATGTGCTTTTTTGCTGTC
CACTTCATGCTGGGACCCGGAGACTATAACTTTAAGTGCATCAAGAACCT
GCCGCCGGATCATGAGTACAAGACCTGGGAGCGCTGGCTTACGTACTCGT
ACTTCTTCAATAAGCTGCTCGATCTGCTGGAGACGGTCTTCTTTGTGCTG
CGAAAGAAGGATCGCCAGATATCCTTTCTGCACGTCTTCCATCACATGTA
CATGCTGTACTTCAGCTTTATGTATCTGTACTACTACGGATACGGTGGTC
ATGGGTTCTTTATGTGCTTCTTCAACGTCGTCGTGCACATCATGATGTAC
AGCTACTACTATCAGTCGTCGCTCAATCGCGATTCGAAGGGCGATCTGTG
GTGGAAGAAGTACATCACTATCGTTCAGCTCATCCAGTTTGGAATCGTTC
TGGGGCATAGTATCTACACCCTAAAGCAACCGGACTGTCCATCAGCCCGG
TTCTCGGCGACCTGTGCCGGCAGCATCTCCGTTGTGTTCATCATCTTATT
TAGCAACTTCTATTTTCATGCCTATATTCGACCCAGAAAAGGAAACAGAA
AAACATCTAAAAGCTTTCTAGACC
BS17535.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-PA | 795 | CG9458-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
CG8534-PA | 798 | CG8534-RA | 352..422 | 371..441 | 255 | 94.3 | Plus |
CG9459-PA | 798 | CG9459-RA | 504..563 | 520..579 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-RA | 900 | CG9458-RA | 11..805 | 17..810 | 3950 | 99.9 | Plus |
CG9459-RA | 901 | CG9459-RA | 213..654 | 200..641 | 845 | 79.4 | Plus |
CG8534-RA | 990 | CG8534-RA | 326..484 | 287..445 | 390 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9819009..9819575 | 810..245 | 2785 | 99.8 | Minus |
3R | 32079331 | 3R | 9819639..9819867 | 245..17 | 1145 | 100 | Minus |
3R | 32079331 | 3R | 9817675..9818069 | 641..247 | 790 | 80 | Minus |
3R | 32079331 | 3R | 9813275..9813433 | 287..445 | 390 | 83 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:48:15 has no hits.
BS17535.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:31 Download gff for
BS17535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-PA | 1..795 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:17:45 Download gff for
BS17535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..808 | 9..815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:01 Download gff for
BS17535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9458-RA | 3..808 | 9..815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:01 Download gff for
BS17535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9819006..9819575 | 245..815 | 99 | <- | Minus |
3R | 9819640..9819875 | 9..244 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:17:45 Download gff for
BS17535.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5644728..5645297 | 245..815 | 99 | <- | Minus |
arm_3R | 5645362..5645597 | 9..244 | 98 | | Minus |
BS17535.pep Sequence
Translation from 16 to 810
> BS17535.pep
MLGDLVDFLGKSPPDPVRLPLLASHKPVLMVLATYLFFVKIAGPKIMRNR
KPFDLRGLIKAYNIMQIVYNVIMCFFAVHFMLGPGDYNFKCIKNLPPDHE
YKTWERWLTYSYFFNKLLDLLETVFFVLRKKDRQISFLHVFHHMYMLYFS
FMYLYYYGYGGHGFFMCFFNVVVHIMMYSYYYQSSLNRDSKGDLWWKKYI
TIVQLIQFGIVLGHSIYTLKQPDCPSARFSATCAGSISVVFIILFSNFYF
HAYIRPKKRKQKNI*
BS17535.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9458-PA | 264 | CG9458-PA | 1..264 | 1..264 | 1436 | 100 | Plus |
CG9459-PA | 265 | CG9459-PA | 1..260 | 1..260 | 1025 | 69.6 | Plus |
CG8534-PA | 265 | CG8534-PA | 14..252 | 15..254 | 710 | 56.2 | Plus |
eloF-PA | 257 | CG16905-PA | 3..253 | 12..262 | 679 | 49.4 | Plus |
CG16904-PA | 262 | CG16904-PA | 11..258 | 15..262 | 645 | 46 | Plus |