Clone Sequence Records
BS17539.complete Sequence
1061 bp assembled on 2010-02-09
GenBank Submission: KX801406
> BS17539.complete
GAAGTTATCAGTCGACATGGGTAACCACATGTGGAGCATCATACTAATGC
TGCTGGTGCTGGAGCAACTAGTGGCCGACTCTGTGGCAGCCAATCTAGCC
CAGCTGGTGAAGAAGCAGAGCCAACAGAAGCAGTTGCAATCCTCGCAGCC
AGGACTGCAGGTGGGACAACAACAGTCGCAGGGACAGCAGATCCACACGC
AGCAGTATGTCCAAGACACATTGGGCGAGCAGCAGGATCTAAAGTCGGAG
GACGAGGAGGAACACGATCCCTACCAGATGATGCAGGAGTCGAAACAGGA
GTCGCGATTGCCCAACTCTGCCAACTATCCCTGGAGTCCATATGCCGCAC
CTCAGGGCAATCCTTACGATGCCATGCCCAAGATGCTTCCCTTCATTGGC
TATGCCCAGCCAGTGCTCATACCCGTCCCACTCTACCTGGCTCCGGATAT
GTTCTATCCCGCCTTTTCTGGCGCCAGCAACGATCTCGAGGATGTGGTGA
TGTCACGAGCCTCCGGTGGTCGGCGTCCTGGGGCCAATCACGCGTCATCA
GCCCGCAATTCGCCCATCTACTACGTAAGACTGCCGCCCACACCGTATAT
GTTTTTGCCCAATATGCCAACGGCTCCATTTGGGGGTGGATTCTCACCAC
TGCTGACCTACCAGCCCATGCCCTCATTCTCCGCCTACGGTTCGGTATTC
AATTTGCCCGTGAACTTCCTGGCCAACGGAAAGCCCACTGGAGTCTACCA
AGTGAACGGATCTCCGGGTGAGGCGATGGGATCCCTGACACCTGGCTTGG
GTGGCGGTGGATATGGAATGCGGCCACCGACGCCTAGTAATCCCTACAGA
CCCATGTCGTCGCCTTCGATGGGTGGTTATGGAGGCTCTCAGCAGAGCTT
TGGACTCGCCTCCATGCCGGTTCCTCAGCAGGACTCCAAGCTGACATCGC
TGAAGCGTCCGTTCGTGTTCAACGGTCGTCCCGAGGACATATACATCCTG
CCAAACAACTTGGGTCCGCTCTACAACGAGCAGAGCTACTACTAAAAGCT
TTCTAGACCAT
BS17539.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1029 | CG13857-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1435 | CG13857-RA | 106..1134 | 17..1045 | 5145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22392490..22393518 | 1045..17 | 5145 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:32 has no hits.
BS17539.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:01 Download gff for
BS17539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 1..1029 | 17..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:49 Download gff for
BS17539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 106..1132 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:53 Download gff for
BS17539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 106..1132 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:02 Download gff for
BS17539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 102..1143 | 12..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:09 Download gff for
BS17539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 106..1132 | 17..1043 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:09 Download gff for
BS17539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22392492..22393518 | 17..1043 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:53 Download gff for
BS17539.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18218214..18219240 | 17..1043 | 100 | | Minus |
BS17539.3prime Sequence
916 bp (847 high quality bases) assembled on 2007-05-15
> BS17539.3prime
ATGGTCTAGAAAGCTTTTAGTAGTAGCTCTGCTCGTTGTAGAGCGGACCC
AAGTTGTTTGGCAGGATGTATATGTCCTCGGGACGACCGTTGAACACGAA
CGGACGCTTCAGCGATGTCAGCTTGGAGTCCTGCTGAGGAACCGGCATGG
AGGCGAGTCCAAAGCTCTGCTGAGAGCCTCCATAACCACCCATCGAAGGC
GACGACATGGGTCTGTAGGGATTACTAGGCGTCGGTGGCCGCATTCCATA
TCCACCGCCACCCAAGCCAGGTGTCAGGGATCCCATCGCCTCACCCGGAG
ATCCGTTCACTTGGTAGACTCCAGTGGGCTTTCCGTTGGCCAGGAAGTTC
ACGGGCAAATTGAATACCGAACCGTAGGCGGAGAATGAGGGCATGGGCTG
GTAGGTCAGCAGTGGTGAGAATCCACCCCCAAATGGAGCCGTTGGCATAT
TGGGCAAAAACATATACGGTGTGGGCGGCAGTCTTACGTAGTAGATGGGC
GAATTGCGGGCTGATGACGCGTGATTGGCCCCAGGACGCCGACCACCGGA
GGCTCGTGACATCACCACATCCTCGAGATCGTTGCTGGCGCCAGAAAAGG
CGGGATAGAACATATCCGGAGCCAGGTAGAGTGGGACGGGTATGAGCACT
GGCTGGGCATAGCCAATGAAGGGAAGCATCTTGGGCATGGCATCGTAAGG
ATTGCCCTGAGGTGCGGCATATGGACTCCAGGGATAGTTGGCAGAGTTGG
GCAATCGCGACTCCTGTTTCGACTCCTGCATCATCTGGTAGGGATCGTGT
TCCTCCTCGTCCTCCGACTTTAGATCCTGCTGCTCGCCCCATGTGTCTTG
GACATACTGCTGCGTGTGGATCTGCTGTCCCTGCGACTGGTGTTGTCCCA
CCTGCAGTCCTGGCTG
BS17539.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-PA | 1029 | CG13857-RA | 130..1029 | 916..17 | 4450 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:47:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1435 | CG13857-RA | 235..1134 | 916..17 | 4470 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:47:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22392490..22393389 | 17..916 | 4470 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:47:23 has no hits.
BS17539.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:54 Download gff for
BS17539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-PA | 130..1029 | 17..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:30:53 Download gff for
BS17539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 235..1143 | 9..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:28 Download gff for
BS17539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 235..1143 | 9..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:28 Download gff for
BS17539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22392481..22393389 | 9..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:30:53 Download gff for
BS17539.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18218203..18219111 | 9..916 | 99 | | Plus |
BS17539.5prime Sequence
890 bp (795 high quality bases) assembled on 2007-05-15
> BS17539.5prime
GAAGTTATCAGTCGACATGGGTAACCACATGTGGAGCATCATACTAATGC
TGCTGGTGCTGGAGCAACTAGTGGCCGACTCTGTGGCAGCCAATCTAGCC
CAGCTGGTGAAGAAGCAGAGCCAACAGAAGCAGTTGCAATCCTCGCAGCC
AGGACTGCAGGTGGGACAACAACAGTCGCAGGGACAGCAGATCCACACGC
AGCAGTATGTCCAAGACACATTGGGCGAGCAGCAGGATCTAAAGTCGGAG
GACGAGGAGGAACACGATCCCTACCAGATGATGCAGGAGTCGAAACAGGA
GTCGCGATTGCCCAACTCTGCCAACTATCCCTGGAGTCCATATGCCGCAC
CTCAGGGCAATCCTTACGATGCCATGCCCAAGATGCTTCCCTTCATTGGC
TATGCCCAGCCAGTGCTCATACCCGTCCCACTCTACCTGGCTCCGGATAT
GTTCTATCCCGCCTTTTCTGGCGCCAGCAACGATCTCGAGGATGTGGTGA
TGTCACGAGCCTCCGGTGGTCGGCGTCCTGGGGCCAATCACGCGTCATCA
GCCCGCAATTCGCCCATCTACTACGTAAGACTGCCGCCCACACCGTATAT
GTTTTTGCCCAATATGCCAACGGCTCCATTTGGGGGTGGATTCTCACCAC
TGCTGACCTACCAGCCCATGCCCTCATTCTCCGCCTACGGTTCGGTATTC
AATTTGCCCGTGAACTTCCTGGCCAACGGAAAGCCCACTGGAGTCTACCA
AGTGAACGGATCTCCGGGTGAGGCGATGGGATCCCTGACACCTGGCTTGG
GTGGCGGTGGATATGGAATGCGGCCACCGACGCCTAGTAATCCCTACAGA
CCCATGTCGTCGCCTTCGATGGGTGGTTATGGAGGCTCTC
BS17539.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-PA | 1029 | CG13857-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:42:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-RA | 1435 | CG13857-RA | 106..979 | 17..890 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22392645..22393518 | 890..17 | 4370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:41:59 has no hits.
BS17539.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:42:58 Download gff for
BS17539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-PA | 1..874 | 17..890 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:16:56 Download gff for
BS17539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 102..979 | 12..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:41 Download gff for
BS17539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13857-RA | 102..979 | 12..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:41 Download gff for
BS17539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22392645..22393522 | 12..890 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:16:56 Download gff for
BS17539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18218367..18219244 | 12..890 | 99 | | Minus |
BS17539.pep Sequence
Translation from 16 to 1044
> BS17539.pep
MGNHMWSIILMLLVLEQLVADSVAANLAQLVKKQSQQKQLQSSQPGLQVG
QQQSQGQQIHTQQYVQDTLGEQQDLKSEDEEEHDPYQMMQESKQESRLPN
SANYPWSPYAAPQGNPYDAMPKMLPFIGYAQPVLIPVPLYLAPDMFYPAF
SGASNDLEDVVMSRASGGRRPGANHASSARNSPIYYVRLPPTPYMFLPNM
PTAPFGGGFSPLLTYQPMPSFSAYGSVFNLPVNFLANGKPTGVYQVNGSP
GEAMGSLTPGLGGGGYGMRPPTPSNPYRPMSSPSMGGYGGSQQSFGLASM
PVPQQDSKLTSLKRPFVFNGRPEDIYILPNNLGPLYNEQSYY*
BS17539.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13857-PA | 342 | CG13857-PA | 1..342 | 1..342 | 1821 | 100 | Plus |
