Clone Sequence Records
BS17540.complete Sequence
1031 bp assembled on 2010-02-09
GenBank Submission: KX806528
> BS17540.complete
GAAGTTATCAGTCGACATGGCCAAACCGTTTTCTTTGACAGAGGAGAAGC
TAGATGACCTATTTGTGCAGGAGGTTGTCAGTGTGGTGAAACTGGTGGAC
ATGCTGCCCGATAAAGATAACATTGTGCCCACATGCACCCGATGGCTCAA
CATCTTCCAGCAGTCAACGCCGAAGGAACGCTTTTCCAGAAACTATATGC
TACTGCTCCTTCATAAACAACTCAATGATCACAAATCGTTGGGTTATCCA
TTTACGTGGCCGGGCAGTTTCCAGTTGGATTTGCGCACTCTTCACCAAAT
GAGCCTAAAACCGAATCCCGCAATCGGCAAAGATGTTGTATGCTGCAAAT
TTGATGAAAGTTTGAATGAGGAGGAACAGTCTTCTTTTAGTTCATGCGAG
AATATAGTGGAGGCCAATCGTAGGTTGGTCAAAGAAAACGCTGCACTAAC
CAAGGAGTCGATGGAGCTTCAATGTCTGATCGATAAGTTGCAGGTGAAAC
GCGCGGCGGACAAACATGCCATTAAAAGGATAAATGATCAGATTTACATG
CTGGACAAGGAGAACCGATATCTGAAGCGAAATTTCGCCTGCTCCTCAAT
CAGCGCCCTAAAAAGACTATGCAATGGACAGGATCCGGCGATGTTTTTTG
ACACCATGTTCAGTGTTTTCTGCGAAGACGTATCAGACCACCAGCAGGTG
CAGCACTTTAACGAACTCTTCAAAACCTTGCTACATGCCCACATGGATCA
CTACCGGCGACAGCAGCGTGCTCCTCTGATGGAGGAGGCAAGCCAAAGTT
TTGACAATCTGAAAGCCCAGGTGAGCAAGAGATACAAAAATGTGTTGGGC
ATGAAATTGGATGCCGAGAGCCACGAGCTCACCCTCAGTGCCATGAGATA
TCTAGCCGTCCTGCGAAAATTGTTCAAGGCCACCTTTAAGGGCAAAGCGA
GCACCAAGAAGGCAGTACTCAAGTTCCTGCAGCACAACTACGAGCTTATG
AACGAGATGTTGTAGAAGCTTTCTAGACCAT
BS17540.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 999 | CG14383-PA | 1..999 | 17..1015 | 4995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 1136 | CG14383-RA | 11..1012 | 14..1015 | 5010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12987500..12988501 | 1015..14 | 5010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:43 has no hits.
BS17540.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:03 Download gff for
BS17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:51 Download gff for
BS17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:57 Download gff for
BS17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 14..1012 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:03 Download gff for
BS17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 1..999 | 17..1015 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:14 Download gff for
BS17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 14..1012 | 17..1015 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:14 Download gff for
BS17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12987500..12988498 | 17..1015 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:57 Download gff for
BS17540.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8813222..8814220 | 17..1015 | 100 | | Minus |
BS17540.3prime Sequence
874 bp (818 high quality bases) assembled on 2007-05-15
> BS17540.3prime
ATGGTCTAGAAAGCTTCTACAACATCTCGTTCATAAGCTCGTAGTTGTGC
TGCAGGAACTTGAGTACTGCCTTCTTGGTGCTCGCTTTGCCCTTAAAGGT
GGCCTTGAACAATTTTCGCAGGACGGCTAGATATCTCATGGCACTGAGGG
TGAGCTCGTGGCTCTCGGCATCCAATTTCATGCCCAACACATTTTTGTAT
CTCTTGCTCACCTGGGCTTTCAGATTGTCAAAACTTTGGCTTGCCTCCTC
CATCAGAGGAGCACGCTGCTGTCGCCGGTAGTGATCCATGTGGGCATGTA
GCAAGGTTTTGAAGAGTTCGTTAAAGTGCTGCACCTGCTGGTGGTCTGAT
ACGTCTTCGCAGAAAACACTGAACATGGTGTCAAAAAACATCGCCGGATC
CTGTCCATTGCATAGTCTTTTTAGGGCGCTGATTGAGGAGCAGGCGAAAT
TTCGCTTCAGATATCGGTTCTCCTTGTCCAGCATGTAAATCTGATCATTT
ATCCTTTTAATGGCATGTTTGTCCGCCGCGCGTTTCACCTGCAACTTATC
GATCAGACATTGAAGCTCCATCGACTCCTTGGTTAGTGCAGCGTTTTCTT
TGACCAACCTACGATTGGCCTCCACTATATTCTCGCATGAACTAAAAGAA
GACTGTTCCTCCTCATTCAAACTTTCATCAAATTTGCAGCATACAACATC
TTTGCCGATTGCGGGATTCGGTTTTAGGCTCATTTGGTGAAGAGTGCGCA
AATCCAACTGGAAACTGCCCGGCCACGTAAATGGATAACCCAACGATTTG
TGATCATTGAGTTGTTTATGAAGGAGCAGTAGCATATAGTTTCTGGAAAA
GCGTTCCTTCGGCGTTGACTGCTG
BS17540.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-PA | 999 | CG14383-RA | 142..999 | 874..17 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 1136 | CG14383-RA | 155..1012 | 874..17 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12987500..12988357 | 17..874 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:08:11 has no hits.
BS17540.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:50 Download gff for
BS17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-PA | 142..999 | 17..874 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:19 Download gff for
BS17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 155..1021 | 9..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:41 Download gff for
BS17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 155..1021 | 9..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:41 Download gff for
BS17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12987491..12988357 | 9..874 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:19 Download gff for
BS17540.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8813213..8814079 | 9..874 | 99 | | Plus |
BS17540.5prime Sequence
824 bp (812 high quality bases) assembled on 2007-05-15
> BS17540.5prime
GAAGTTATCAGTCGACATGGCCAAACCGTTTTCTTTGACAGAGGAGAAGC
TAGATGACCTATTTGTGCAGGAGGTTGTCAGTGTGGTGAAACTGGTGGAC
ATGCTGCCCGATAAAGATAACATTGTGCCCACATGCACCCGATGGCTCAA
CATCTTCCAGCAGTCAACGCCGAAGGAACGCTTTTCCAGAAACTATATGC
TACTGCTCCTTCATAAACAACTCAATGATCACAAATCGTTGGGTTATCCA
TTTACGTGGCCGGGCAGTTTCCAGTTGGATTTGCGCACTCTTCACCAAAT
GAGCCTAAAACCGAATCCCGCAATCGGCAAAGATGTTGTATGCTGCAAAT
TTGATGAAAGTTTGAATGAGGAGGAACAGTCTTCTTTTAGTTCATGCGAG
AATATAGTGGAGGCCAATCGTAGGTTGGTCAAAGAAAACGCTGCACTAAC
CAAGGAGTCGATGGAGCTTCAATGTCTGATCGATAAGTTGCAGGTGAAAC
GCGCGGCGGACAAACATGCCATTAAAAGGATAAATGATCAGATTTACATG
CTGGACAAGGAGAACCGATATCTGAAGCGAAATTTCGCCTGCTCCTCAAT
CAGCGCCCTAAAAAGACTATGCAATGGACAGGATCCGGCGATGTTTTTTG
ACACCATGTTCAGTGTTTTCTGCGAAGACGTATCAGACCACCAGCAGGTG
CAGCACTTTAACGAACTCTTCAAAACCTTGCTACATGCCCACATGGATCA
CTACCGGCGACAGCAGCGTGCTCCTCTGATGGAGGAGGCAAGCCAAAGTT
TTGACAATCTGAAAGCCCAGGTGA
BS17540.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-PA | 999 | CG14383-RA | 1..808 | 17..824 | 4040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 05:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-RA | 1136 | CG14383-RA | 11..821 | 14..824 | 4055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 05:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12987691..12988501 | 824..14 | 4055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 05:59:55 has no hits.
BS17540.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:39 Download gff for
BS17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-PA | 1..807 | 17..823 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:48:07 Download gff for
BS17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 3..820 | 7..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:41 Download gff for
BS17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14383-RA | 3..820 | 7..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:41 Download gff for
BS17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12987692..12988509 | 7..823 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:48:07 Download gff for
BS17540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8813414..8814231 | 7..823 | 99 | | Minus |
BS17540.pep Sequence
Translation from 16 to 1014
> BS17540.pep
MAKPFSLTEEKLDDLFVQEVVSVVKLVDMLPDKDNIVPTCTRWLNIFQQS
TPKERFSRNYMLLLLHKQLNDHKSLGYPFTWPGSFQLDLRTLHQMSLKPN
PAIGKDVVCCKFDESLNEEEQSSFSSCENIVEANRRLVKENAALTKESME
LQCLIDKLQVKRAADKHAIKRINDQIYMLDKENRYLKRNFACSSISALKR
LCNGQDPAMFFDTMFSVFCEDVSDHQQVQHFNELFKTLLHAHMDHYRRQQ
RAPLMEEASQSFDNLKAQVSKRYKNVLGMKLDAESHELTLSAMRYLAVLR
KLFKATFKGKASTKKAVLKFLQHNYELMNEML*
BS17540.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14383-PA | 332 | CG14383-PA | 1..332 | 1..332 | 1721 | 100 | Plus |
