Clone Sequence Records
BS17541.complete Sequence
977 bp assembled on 2010-02-09
GenBank Submission: KX803075
> BS17541.complete
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAGCCCAAGAAATC
CCTGTCGCCGAACAACTCGAACAACAGCAGCAGCAGCAGCTCCAGCTCCA
AATTCTCCCGTGCTCCCGCCTCCAAGAAGGAGGATAAGAAGCAGCAGAGC
ATCCTGCGACCGCCAGTCCAGTACGTCTACATGAAGGGCATGTCGGGACT
GTATTCCCGAGTGCCCAGCTATGCGGTCTGCTATCCGTATACCCTACAGC
ACATGTACTAAAAGCTTTCTAGACCAT
BS17541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 945 | CG13054-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 1340 | CG13054-RA | 156..1103 | 16..963 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16256089..16257036 | 963..16 | 4740 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:12:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6822 | 715..800 | 143 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6868 | 718..869 | 142 | 60.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1153 | 715..801 | 137 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6871 | 760..801 | 129 | 78.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2368 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2371 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2374 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2430 | 715..796 | 116 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2377 | 761..800 | 110 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6780 | 761..800 | 110 | 75 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8572..8677 | 747..846 | 110 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2476 | 763..800 | 109 | 76.3 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7140..7224 | 762..846 | 109 | 63.2 | Plus |
BS17541.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:10 Download gff for
BS17541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 1..945 | 17..961 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:36 Download gff for
BS17541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 157..1099 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:13 Download gff for
BS17541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 157..1099 | 17..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:10 Download gff for
BS17541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 153..1103 | 13..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:16 Download gff for
BS17541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 157..1099 | 17..959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:16 Download gff for
BS17541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16256093..16257035 | 17..959 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:13 Download gff for
BS17541.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16249193..16250135 | 17..959 | 100 | | Minus |
BS17541.3prime Sequence
879 bp (804 high quality bases) assembled on 2007-05-15
> BS17541.3prime
ATGGTCTAGAAAGCTTTTAGTACATGTGCTGTAGGGTATACGGATAGCAG
ACCGCATAGCTGGGCACTCGGGAATACAGTCCCGACATGCCCTTCATGTA
GACGTACTGGACTGGCGGTCGCAGGATGCTCTGCTGCTTCTTATCCTCCT
TCTTGGAGGCGGGAGCACGGGAGAATTTGGAGCTGGAGCTGCTGCTGCTG
CTGTTGTTCGAGTTGTTCGGCGACAGGGATTTCTTGGGCTGACGCAGTGG
AGTGCTGCTGCAGGACAACGAGCGCATCGATGCATTTCCCGTCGGACTGG
AGAAGTGATGCAGGATGCGGCTCACCGAGGAGGAGATGGAAATTCGGCTG
AGATGCAGTCCCGATGACTTGGCGGAAGCGGCTGATGCGGATCGAGGCTT
GCTGTTCTCGTTCTCGTTCTCGTCGTGGCGCAGCTCCACCTCGTCCTCCG
CCTCGTTGCTGCTACCCTCCTCGCTGGTGTCTTCCTCGAAGTGCAGCTGC
GGATGCAGTTGCTCCATGGCACTGCCGGGTCTGTAGACAGCCTCCACATA
GATGTGTCCCTGCTGATCGTAGTAATCCAGACCGGGCGAGTATCTGGAGC
AGGCCGATCCGCTCGAGGTCCGGGATGTGTGCTCCAGGTCCAGGGAGGAA
CCATTGATAGGGCACTCGTGGCTGCCACGCTCGTAGCTCAAGCTGAAGGA
ATCCGTTGAGCTGCTCCTAATATCATCCTGGCTGCTGTAGACCGTGTCGT
TCTGCTGGTTCTGGTGGTGGAAGTGCCTGCCCAGGTGCCTGCTGAGCAAT
TGCAGCAAACTCCTGGAGCGGGAAAGCTTCTTGGGCCCATTCCTTGGGTG
ACGATGAAACTTCTCCTTCTGCTGCTGCT
BS17541.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-PA | 945 | CG13054-RA | 83..945 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 1340 | CG13054-RA | 239..1103 | 879..15 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16256089..16256953 | 15..879 | 4325 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 06:07:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6822 | 263..178 | 143 | 66.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6868 | 260..109 | 142 | 60.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1153 | 263..177 | 137 | 64.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6871 | 218..177 | 129 | 78.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2374 | 217..178 | 119 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2368 | 217..178 | 119 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2371 | 217..178 | 119 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2430 | 263..182 | 116 | 65.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2377 | 217..178 | 110 | 75 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6780 | 217..178 | 110 | 75 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 8572..8677 | 231..132 | 110 | 61.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2476 | 215..178 | 109 | 76.3 | Minus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7140..7224 | 216..132 | 109 | 63.2 | Minus |
BS17541.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:58 Download gff for
BS17541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-PA | 83..945 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:32 Download gff for
BS17541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 239..1103 | 15..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:43 Download gff for
BS17541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 239..1103 | 15..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:43 Download gff for
BS17541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16256089..16256953 | 15..879 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:32 Download gff for
BS17541.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16249189..16250053 | 15..879 | 100 | | Plus |
BS17541.5prime Sequence
828 bp (812 high quality bases) assembled on 2007-05-15
> BS17541.5prime
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAGCCCAAGAAATC
CCTGTCGCCGAACAACTCGAACAACAGCAGCAGCAGCAGCTCCAGCTCCA
AATTCTCCCGTGCTCCCGCCCTCCAGAA
BS17541.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-PA | 945 | CG13054-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-RA | 1340 | CG13054-RA | 156..960 | 16..820 | 4025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16256232..16257036 | 820..16 | 4025 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 13:25:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6740..6822 | 715..800 | 143 | 66.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6801 | 718..800 | 137 | 66.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1153 | 715..801 | 137 | 64.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6871 | 760..801 | 129 | 78.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2329..2368 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2332..2371 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2374 | 761..800 | 119 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2430 | 715..796 | 116 | 65.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2377 | 761..800 | 110 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6780 | 761..800 | 110 | 75 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 8572..8659 | 747..828 | 110 | 65.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2476 | 763..800 | 109 | 76.3 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7140..7206 | 762..828 | 109 | 68.1 | Plus |
BS17541.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:48 Download gff for
BS17541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-PA | 1..808 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:06 Download gff for
BS17541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 153..968 | 13..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:58:35 Download gff for
BS17541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13054-RA | 153..968 | 13..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:58:35 Download gff for
BS17541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16256224..16257039 | 13..828 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:06 Download gff for
BS17541.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16249324..16250139 | 13..828 | 99 | | Minus |
BS17541.pep Sequence
Translation from 16 to 960
> BS17541.pep
MDTLSPNNGSKSSSSGSSAASSSMDLGKQQQKEKFHRHPRNGPKKLSRSR
SLLQLLSRHLGRHFHHQNQQNDTVYSSQDDIRSSSTDSFSLSYERGSHEC
PINGSSLDLEHTSRTSSGSACSRYSPGLDYYDQQGHIYVEAVYRPGSAME
QLHPQLHFEEDTSEEGSSNEAEDEVELRHDENENENSKPRSASAASAKSS
GLHLSRISISSSVSRILHHFSSPTGNASMRSLSCSSTPLRQPKKSLSPNN
SNNSSSSSSSSKFSRAPASKKEDKKQQSILRPPVQYVYMKGMSGLYSRVP
SYAVCYPYTLQHMY*
BS17541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:48:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13054-PA | 314 | CG13054-PA | 1..314 | 1..314 | 1620 | 100 | Plus |