Clone BS17541 Report

Search the DGRC for BS17541

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG13054-RA
Protein status:BS17541.pep: full length peptide match
Sequenced Size:977

Clone Sequence Records

BS17541.complete Sequence

977 bp assembled on 2010-02-09

GenBank Submission: KX803075

> BS17541.complete
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAGCCCAAGAAATC
CCTGTCGCCGAACAACTCGAACAACAGCAGCAGCAGCAGCTCCAGCTCCA
AATTCTCCCGTGCTCCCGCCTCCAAGAAGGAGGATAAGAAGCAGCAGAGC
ATCCTGCGACCGCCAGTCCAGTACGTCTACATGAAGGGCATGTCGGGACT
GTATTCCCGAGTGCCCAGCTATGCGGTCTGCTATCCGTATACCCTACAGC
ACATGTACTAAAAGCTTTCTAGACCAT

BS17541.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 945 CG13054-PA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 1340 CG13054-RA 156..1103 16..963 4740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:12:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16256089..16257036 963..16 4740 100 Minus
Blast to na_te.dros performed 2014-11-28 03:12:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6822 715..800 143 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6868 718..869 142 60.1 Plus
roo 9092 roo DM_ROO 9092bp 1067..1153 715..801 137 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6871 760..801 129 78.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2368 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2371 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2374 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2430 715..796 116 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2377 761..800 110 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6780 761..800 110 75 Plus
TART-C 11124 TART-C TARTC 11124bp 8572..8677 747..846 110 61.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2476 763..800 109 76.3 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7140..7224 762..846 109 63.2 Plus

BS17541.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:46:10 Download gff for BS17541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 1..945 17..961 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:16:36 Download gff for BS17541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 157..1099 17..959 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:38:13 Download gff for BS17541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 157..1099 17..959 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:46:10 Download gff for BS17541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 153..1103 13..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:45:16 Download gff for BS17541.complete
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 157..1099 17..959 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:45:16 Download gff for BS17541.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16256093..16257035 17..959 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:38:13 Download gff for BS17541.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16249193..16250135 17..959 100   Minus

BS17541.3prime Sequence

879 bp (804 high quality bases) assembled on 2007-05-15

> BS17541.3prime
ATGGTCTAGAAAGCTTTTAGTACATGTGCTGTAGGGTATACGGATAGCAG
ACCGCATAGCTGGGCACTCGGGAATACAGTCCCGACATGCCCTTCATGTA
GACGTACTGGACTGGCGGTCGCAGGATGCTCTGCTGCTTCTTATCCTCCT
TCTTGGAGGCGGGAGCACGGGAGAATTTGGAGCTGGAGCTGCTGCTGCTG
CTGTTGTTCGAGTTGTTCGGCGACAGGGATTTCTTGGGCTGACGCAGTGG
AGTGCTGCTGCAGGACAACGAGCGCATCGATGCATTTCCCGTCGGACTGG
AGAAGTGATGCAGGATGCGGCTCACCGAGGAGGAGATGGAAATTCGGCTG
AGATGCAGTCCCGATGACTTGGCGGAAGCGGCTGATGCGGATCGAGGCTT
GCTGTTCTCGTTCTCGTTCTCGTCGTGGCGCAGCTCCACCTCGTCCTCCG
CCTCGTTGCTGCTACCCTCCTCGCTGGTGTCTTCCTCGAAGTGCAGCTGC
GGATGCAGTTGCTCCATGGCACTGCCGGGTCTGTAGACAGCCTCCACATA
GATGTGTCCCTGCTGATCGTAGTAATCCAGACCGGGCGAGTATCTGGAGC
AGGCCGATCCGCTCGAGGTCCGGGATGTGTGCTCCAGGTCCAGGGAGGAA
CCATTGATAGGGCACTCGTGGCTGCCACGCTCGTAGCTCAAGCTGAAGGA
ATCCGTTGAGCTGCTCCTAATATCATCCTGGCTGCTGTAGACCGTGTCGT
TCTGCTGGTTCTGGTGGTGGAAGTGCCTGCCCAGGTGCCTGCTGAGCAAT
TGCAGCAAACTCCTGGAGCGGGAAAGCTTCTTGGGCCCATTCCTTGGGTG
ACGATGAAACTTCTCCTTCTGCTGCTGCT

BS17541.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-PA 945 CG13054-RA 83..945 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 1340 CG13054-RA 239..1103 879..15 4325 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16256089..16256953 15..879 4325 100 Plus
Blast to na_te.dros performed 2015-02-13 06:07:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6822 263..178 143 66.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6868 260..109 142 60.1 Minus
roo 9092 roo DM_ROO 9092bp 1067..1153 263..177 137 64.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6871 218..177 129 78.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2374 217..178 119 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2368 217..178 119 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2371 217..178 119 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2430 263..182 116 65.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2377 217..178 110 75 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6780 217..178 110 75 Minus
TART-C 11124 TART-C TARTC 11124bp 8572..8677 231..132 110 61.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2476 215..178 109 76.3 Minus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7140..7224 216..132 109 63.2 Minus

BS17541.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:58 Download gff for BS17541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-PA 83..945 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:32 Download gff for BS17541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 239..1103 15..879 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:43 Download gff for BS17541.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 239..1103 15..879 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:43 Download gff for BS17541.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16256089..16256953 15..879 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:32 Download gff for BS17541.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16249189..16250053 15..879 100   Plus

BS17541.5prime Sequence

828 bp (812 high quality bases) assembled on 2007-05-15

> BS17541.5prime
GAAGTTATCAGTCGACATGGATACTCTGTCACCCAATAATGGCTCTAAGT
CGAGCTCCAGCGGCAGTTCGGCGGCCAGTTCCTCCATGGATCTCGGCAAG
CAGCAGCAGAAGGAGAAGTTTCATCGTCACCCAAGGAATGGGCCCAAGAA
GCTTTCCCGCTCCAGGAGTTTGCTGCAATTGCTCAGCAGGCACCTGGGCA
GGCACTTCCACCACCAGAACCAGCAGAACGACACGGTCTACAGCAGCCAG
GATGATATTAGGAGCAGCTCAACGGATTCCTTCAGCTTGAGCTACGAGCG
TGGCAGCCACGAGTGCCCTATCAATGGTTCCTCCCTGGACCTGGAGCACA
CATCCCGGACCTCGAGCGGATCGGCCTGCTCCAGATACTCGCCCGGTCTG
GATTACTACGATCAGCAGGGACACATCTATGTGGAGGCTGTCTACAGACC
CGGCAGTGCCATGGAGCAACTGCATCCGCAGCTGCACTTCGAGGAAGACA
CCAGCGAGGAGGGTAGCAGCAACGAGGCGGAGGACGAGGTGGAGCTGCGC
CACGACGAGAACGAGAACGAGAACAGCAAGCCTCGATCCGCATCAGCCGC
TTCCGCCAAGTCATCGGGACTGCATCTCAGCCGAATTTCCATCTCCTCCT
CGGTGAGCCGCATCCTGCATCACTTCTCCAGTCCGACGGGAAATGCATCG
ATGCGCTCGTTGTCCTGCAGCAGCACTCCACTGCGTCAGCCCAAGAAATC
CCTGTCGCCGAACAACTCGAACAACAGCAGCAGCAGCAGCTCCAGCTCCA
AATTCTCCCGTGCTCCCGCCCTCCAGAA

BS17541.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-PA 945 CG13054-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-RA 1340 CG13054-RA 156..960 16..820 4025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16256232..16257036 820..16 4025 100 Minus
Blast to na_te.dros performed 2015-02-13 13:25:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6740..6822 715..800 143 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6801 718..800 137 66.3 Plus
roo 9092 roo DM_ROO 9092bp 1067..1153 715..801 137 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6830..6871 760..801 129 78.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2329..2368 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2332..2371 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2335..2374 761..800 119 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2430 715..796 116 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2338..2377 761..800 110 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6780 761..800 110 75 Plus
TART-C 11124 TART-C TARTC 11124bp 8572..8659 747..828 110 65.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2476 763..800 109 76.3 Plus
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 7140..7206 762..828 109 68.1 Plus

BS17541.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:48 Download gff for BS17541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-PA 1..808 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:42:06 Download gff for BS17541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 153..968 13..828 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:58:35 Download gff for BS17541.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13054-RA 153..968 13..828 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:58:35 Download gff for BS17541.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16256224..16257039 13..828 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:42:06 Download gff for BS17541.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16249324..16250139 13..828 99   Minus

BS17541.pep Sequence

Translation from 16 to 960

> BS17541.pep
MDTLSPNNGSKSSSSGSSAASSSMDLGKQQQKEKFHRHPRNGPKKLSRSR
SLLQLLSRHLGRHFHHQNQQNDTVYSSQDDIRSSSTDSFSLSYERGSHEC
PINGSSLDLEHTSRTSSGSACSRYSPGLDYYDQQGHIYVEAVYRPGSAME
QLHPQLHFEEDTSEEGSSNEAEDEVELRHDENENENSKPRSASAASAKSS
GLHLSRISISSSVSRILHHFSSPTGNASMRSLSCSSTPLRQPKKSLSPNN
SNNSSSSSSSSKFSRAPASKKEDKKQQSILRPPVQYVYMKGMSGLYSRVP
SYAVCYPYTLQHMY*

BS17541.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:48:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13054-PA 314 CG13054-PA 1..314 1..314 1620 100 Plus