Clone Sequence Records
BS17542.complete Sequence
1127 bp assembled on 2009-12-07
GenBank Submission: KX804135
> BS17542.complete
GAAGTTATCAGTCGACATGGAGCCGGTTCCAGAGGAAGCCCGAGGAGTGG
GTGATGACGAAGGGGAACTCGATTGTCTAACACATATGATTGGGGCGTTG
CTTTTGCAAAAAGAACCGGAAAATCCTGAAAATGGTGACTCAAAGGAAAC
AATTTGGAGTGGAGAGCTCGAATGGGAGGATGCACAGATATTGGATCAAC
CGAAGACTCTGCACACGGTCCAATGCAAAATCTGCTCCATGGTTAAAGAA
GGTCAGCCGGAGATCAACACGGAGAACTGGCCAAACAAGCTGAAAACACA
ACTGATACCCAAAAAAGTGCTGGGTAAAATTGGCGAACAATTCCTAAAGG
ATGCCAGGATGGTTGTATTCCGATCCAGCCAAGGAGAGGTACTCAATTTA
TTGATCACGGCGATGAGCTCTGGTTTCGCTGGTTGCATCCACTTCCCCTC
CAATCCCAACTGCAACATCAAGGCTCTAATTCTCATCTACTCGCGCGATC
ATCAAGCTTTGGTTGGCTTCATACCCAACAATGAGGATTCGTTTAGCGAA
CGACTGCAGGAGATTCTTCAGGGTGCAAAACGAAAGCCGGGCGTCAAAAC
ACCCAAGCAGCCACAGCCAGAAGAACCGCCTCCTGTGGAGGAAGATGCCA
TTATAAATGAACTCCTATGGACTGGATCGCTGAATTGGTCGACACAAGCA
AGTTTAGAGGAGCCAAGCATTAGTCACAAGCTTGAGTGTTCCGTGTACAT
AGCTATAAAAAACGGTGATCCCGGGATCAGTGCGGAGGATTGGCCAACTG
ATATGCCTATGGTTTTGATGCCTTCAATTTATCTTGGTCAGTTCGCCGGA
GCGTTTATAAAGGACTCGAAACTTATAATTCTCCGATCGACACCTGGAGA
AGAACACGACTCGCTAGCATCATCAATGTCCGCCGGCAGTTGTGGCTGTG
CCCGATTTTCCTCCGAGGTCGTCTGCAAGGTTATCATGCTGCTGTATTCG
TCCCCGAGGAACGCCTTCCTGGGCTTTATTCCGAGAGATCAAGCTAATTT
CGTCAAGCGATTGCGGGAAGTATTAGACGAACATCGCCAAAAGGCGAGAA
ACAAAGAGTAAAAGCTTTCTAGACCAT
BS17542.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13609-RA | 1095 | CG13609-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13609-RA | 1516 | CG13609-RA | 101..1197 | 16..1112 | 5485 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24227123..24228219 | 16..1112 | 5485 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:36:15 has no hits.
BS17542.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:06 Download gff for
BS17542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:47 Download gff for
BS17542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 339..1431 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:52:27 Download gff for
BS17542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 102..1194 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:06 Download gff for
BS17542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 333..1443 | 10..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:52:30 Download gff for
BS17542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 102..1194 | 17..1109 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:52:30 Download gff for
BS17542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24227124..24228216 | 17..1109 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:52:27 Download gff for
BS17542.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20052846..20053938 | 17..1109 | 100 | | Plus |
BS17542.3prime Sequence
880 bp (838 high quality bases) assembled on 2007-05-15
> BS17542.3prime
ATGGTCTAGAAAGCTTTTACTCTTTGTTTCTCGCCTTTTGGCGATGTTCG
TCTAATACTTCCCGCAATCGCTTGACGAAATTAGCTTGATCTCTCGGAAT
AAAGCCCAGGAAGGCGTTCCTCGGGGACGAATACAGCAGCATGATAACCT
TGCAGACGACCTCGGAGGAAAATCGGGCACAGCCACAACTGCCGGCGGAC
ATTGATGATGCTAGCGAGTCGTGTTCTTCTCCAGGTGTCGATCGGAGAAT
TATAAGTTTCGAGTCCTTTATAAACGCTCCGGCGAACTGACCAAGATAAA
TTGAAGGCATCAAAACCATAGGCATATCAGTTGGCCAATCCTCCGCACTG
ATCCCGGGATCACCGTTTTTTATAGCTATGTACACGGAACACTCAAGCTT
GTGACTAATGCTTGGCTCCTCTAAACTTGCTTGTGTCGACCAATTCAGCG
ATCCAGTCCATAGGAGTTCATTTATAATGGCATCTTCCTCCACAGGAGGC
GGTTCTTCTGGCTGTGGCTGCTTGGGTGTTTTGACGCCCGGCTTTCGTTT
TGCACCCTGAAGAATCTCCTGCAGTCGTTCGCTAAACGAATCCTCATTGT
TGGGTATGAAGCCAACCAAAGCTTGATGATCGCGCGAGTAGATGAGAATT
AGAGCCTTGATGTTGCAGTTGGGATTGGAGGGGAAGTGGATGCAACCAGC
GAAACCAGAGCTCATCGCCGTGATCAATAAATTGAGTACCTCTCCTTGGC
TGGATCGGAATACAACCATCCTGGCATCCTTTAGGAATTGTTCGCCAATT
TTACCCAGCACTTTTTTGGGTATCAGTTGTGTTTTCAGCTTGTTTGGCCA
GTTCTCCGTGTTGATCTCCGGCTGACCTTC
BS17542.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13609-PA | 1095 | CG13609-RA | 232..1095 | 880..17 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:12:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13609-RA | 1516 | CG13609-RA | 333..1197 | 880..16 | 4325 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24227355..24228219 | 880..16 | 4325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:12:12 has no hits.
BS17542.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:07 Download gff for
BS17542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-PA | 232..1095 | 17..880 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:23 Download gff for
BS17542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 333..1206 | 8..880 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:13:07 Download gff for
BS17542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 333..1206 | 8..880 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:13:07 Download gff for
BS17542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24227355..24228228 | 8..880 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:23 Download gff for
BS17542.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20053077..20053950 | 8..880 | 99 | | Minus |
BS17542.5prime Sequence
873 bp (788 high quality bases) assembled on 2007-05-15
> BS17542.5prime
GAAGTTATCAGTCGACATGGAGCCGGTTCCAGAGGAAGCCCGAGGAGTGG
GTGATGACGAAGGGGAACTCGATTGTCTAACACATATGATTGGGGCGTTG
CTTTTGCAAAAAGAACCGGAAAATCCTGAAAATGGTGACTCAAAGGAAAC
AATTTGGAGTGGAGAGCTCGAATGGGAGGATGCACAGATATTGGATCAAC
CGAAGACTCTGCACACGGTCCAATGCAAAATCTGCTCCATGGTTAAAGAA
GGTCAGCCGGAGATCAACACGGAGAACTGGCCAAACAAGCTGAAAACACA
ACTGATACCCAAAAAAGTGCTGGGTAAAATTGGCGAACAATTCCTAAAGG
ATGCCAGGATGGTTGTATTCCGATCCAGCCAAGGAGAGGTACTCAATTTA
TTGATCACGGCGATGAGCTCTGGTTTCGCTGGTTGCATCCACTTCCCCTC
CAATCCCAACTGCAACATCAAGGCTCTAATTCTCATCTACTCGCGCGATC
ATCAAGCTTTGGTTGGCTTCATACCCAACAATGAGGATTCGTTTAGCGAA
CGACTGCAGGAGATTCTTCAGGGTGCAAAACGAAAGCCGGGCGTCAAAAC
ACCCAAGCAGCCACAGCCAGAAGAACCGCCTCCTGTGGAGGAAGATGCCA
TTATAAATGAACTCCTATGGACTGGATCGCTGAATTGGTCGACACAAGCA
AGTTTAGAGGAGCCAAGCATTAGTCACAAGCTTGAGTGTTCCGTGTACAT
AGCTATAAAAAACGGTGATCCCGGGATCAGTGCGGAGGATTGGGCCACTG
ATATGCCTATGGTTTTGATGCCCTTCATTTATCTTGGTCAGTTCGCCGGA
GCGTTTATAAAGGACTCGAAAAC
BS17542.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13609-PA | 1095 | CG13609-RA | 1..806 | 17..822 | 3980 | 99.7 | Plus |
| CG13609-PA | 1095 | CG13609-RA | 811..855 | 827..871 | 225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13609-RA | 1516 | CG13609-RA | 101..956 | 16..871 | 4205 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24227123..24227978 | 16..871 | 4205 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:30:23 has no hits.
BS17542.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:58 Download gff for
BS17542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-PA | 1..856 | 17..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:18 Download gff for
BS17542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 96..957 | 10..873 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:03:03 Download gff for
BS17542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13609-RA | 96..957 | 10..873 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:03:03 Download gff for
BS17542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24227118..24227979 | 10..873 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:18 Download gff for
BS17542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20052840..20053701 | 10..873 | 99 | | Plus |
BS17542.pep Sequence
Translation from 16 to 1110
> BS17542.pep
MEPVPEEARGVGDDEGELDCLTHMIGALLLQKEPENPENGDSKETIWSGE
LEWEDAQILDQPKTLHTVQCKICSMVKEGQPEINTENWPNKLKTQLIPKK
VLGKIGEQFLKDARMVVFRSSQGEVLNLLITAMSSGFAGCIHFPSNPNCN
IKALILIYSRDHQALVGFIPNNEDSFSERLQEILQGAKRKPGVKTPKQPQ
PEEPPPVEEDAIINELLWTGSLNWSTQASLEEPSISHKLECSVYIAIKNG
DPGISAEDWPTDMPMVLMPSIYLGQFAGAFIKDSKLIILRSTPGEEHDSL
ASSMSAGSCGCARFSSEVVCKVIMLLYSSPRNAFLGFIPRDQANFVKRLR
EVLDEHRQKARNKE*
BS17542.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13609-PA | 364 | CG13609-PA | 1..364 | 1..364 | 1913 | 100 | Plus |
| MED25-PA | 863 | CG12254-PA | 503..744 | 31..265 | 435 | 37.6 | Plus |
| MED25-PA | 863 | CG12254-PA | 479..668 | 171..355 | 374 | 41.1 | Plus |
