Clone Sequence Records
BS17545.complete Sequence
1082 bp assembled on 2010-02-09
GenBank Submission: KX801470
> BS17545.complete
GAAGTTATCAGTCGACATGAGTATGGAATCCAAGTCGAAGCGGCGGTCCC
CTCCAAGCAGTACTCTTGAAGAAGAAGTTCCTGGAAAGACCATCCACCCT
GAGGATCCGAAAATTACATCTAAAAACTTCGAGAATCCCACAAAAGAAAC
TTCCATCCAGAGCCCCATTAAGAACTCCATAAAACCATCGTGGAATCCAG
AACCCAAGATCACTAGGACCTCCATATGGGACATTGAATCCGCAGGAGGG
GATTCAATACAAAATGATTGTCAAAGTGAATGTAACGTTGAAGATCAAGG
TCATGAGCAAGAGGTCACGTTGGAGACTAGGATATTTTCTGGAACCTCAG
ACCGCATTGAACCGCACCGACATTACGGCGTCTATTTGTTGCGCAACCGC
TTCGATGCCATACAATTGCTCACCAGGAATACGAGCTCCAGTGCGGATGA
CTACGGTGAGCGGAGGGTCATTTCGGAATACCGGGAAATGCGATGTGAAT
TCCGAGTCTGGTCTCCCTTCCAATCCAAACTGGCAGCTGGAATAATGGGT
GGTGTCAGTGATTTGCATCTGCAAATTGGCTCAAAGGTCCTATACCTGGG
AGCTGGGTTTGGGCGATCGGTATCCCACATCTCGGATATAGTGGGTGACT
CCGGAATGGTTTATGCTGTGGAGCAGATTCCTTGGGCTGGTCGTCAGCTG
ACCATAATGGCCAATCGTCGTTCAAATATCGTACCCATAGTCGAGGATGC
TACCATGCCATATAAATACCGCTATGAGGTTCCCGCTTGCATTGACATTA
TCTTCGCTGATCTTCCGCCTTCGGTTCTGATTCGAGCTCTGATGCTAAAT
GCTAGACACTTCCTGAACCCCGGTGGTCACTTCGTGGCCTATTTACATTC
GCCTACTAGTCAAGGTGTGGTCTTTAATAAGGATTCCTTTGCCGCCGAGA
GGAGACTTTTAAAGGAGAAGCAGCTGGAACCAAAGGAAATGGTTCTATTG
GAGCCCTTTAAGGCCGGTTACGCCTTTGTTGTGGGCGTGTACATTCGTAA
GGATGTTTCCTTGTAGAAGCTTTCTAGACCAT
BS17545.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1050 | CG10909-PA | 1..1050 | 17..1066 | 5250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1173 | CG10909-RA | 63..1112 | 17..1066 | 5250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12910181..12911230 | 1066..17 | 5250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:47 has no hits.
BS17545.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:07 Download gff for
BS17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 1..1050 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:54 Download gff for
BS17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 63..1112 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:59 Download gff for
BS17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 63..1112 | 17..1066 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:08 Download gff for
BS17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 60..1112 | 14..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:15 Download gff for
BS17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 63..1112 | 17..1066 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:15 Download gff for
BS17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12910181..12911230 | 17..1066 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:59 Download gff for
BS17545.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8735903..8736952 | 17..1066 | 100 | | Minus |
BS17545.5prime Sequence
571 bp (517 high quality bases) assembled on 2007-05-15
> BS17545.5prime
GAAGTTATCAGTCGACATGAGTATGGAATCCAAGTCGAAGCGGCGGTCCC
CTCCAAGCAGTACTCTTGAAGAAGAAGTTCCTGGAAAGACCATCCACCCT
GAGGATCCGAAAATTACATCTAAAAACTTCGAGAATCCCACAAAAGAAAC
TTCCATCCAGAGCCCCATTAAGAACTCCATAAAACCATCGTGGAATCCAG
AACCCAAGATCACTAGGACCTCCATATGGGACATTGAATCCGCAGGAGGG
GATTCAATACAAAATGATTGTCAAAGTGAATGTAACGTTGAAGATCAAGG
TCATGAGCAAGAGGTCACGTTGGAGACTAGGATATTTTCTGGAACCTCAG
ACCGCATTGAACCGCACCGACATTACGGCGTCTATTTGTTGCGCAACCGC
TTCGATGCCATACAATTGCTCACCAGGAATACGAGCTCCAGTGCGGATGA
CTACGGTGAGCGGAGGGTCATTTCGGAATACCGGGAAATGCGATGTGAAT
TCCGAGTCTGGTCTCCCTTCCAATCCAAACTGGCAGCTGGAAATATGGGT
GGTGTCAGTGATTTGCATCTG
BS17545.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-PA | 1050 | CG10909-RA | 1..555 | 17..571 | 2725 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1173 | CG10909-RA | 63..617 | 17..571 | 2745 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12910676..12911230 | 571..17 | 2745 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:17:39 has no hits.
BS17545.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:02 Download gff for
BS17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-PA | 1..555 | 17..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:35 Download gff for
BS17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 60..617 | 14..571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:10 Download gff for
BS17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 60..617 | 14..571 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:10 Download gff for
BS17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12910676..12911233 | 14..571 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:35 Download gff for
BS17545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8736398..8736955 | 14..571 | 99 | | Minus |
BS17545.3prime Sequence
742 bp (741 high quality bases) assembled on 2007-05-15
> BS17545.3prime
ATGGTCTAGAAAGCTTCTACAAGGAAACATCCTTACGAATGTACACGCCC
ACAACAAAGGCGTAACCGGCCTTAAAGGGCTCCAATAGAACCATTTCCTT
TGGTTCCAGCTGCTTCTCCTTTAAAAGTCTCCTCTCGGCGGCAAAGGAAT
CCTTATTAAAGACCACACCTTGACTAGTAGGCGAATGTAAATAGGCCACG
AAGTGACCACCGGGGTTCAGGAAGTGTCTAGCATTTAGCATCAGAGCTCG
AATCAGAACCGAAGGCGGAAGATCAGCGAAGATAATGTCAATGCAAGCGG
GAACCTCATAGCGGTATTTATATGGCATGGTAGCATCCTCGACTATGGGT
ACGATATTTGAACGACGATTGGCCATTATGGTCAGCTGACGACCAGCCCA
AGGAATCTGCTCCACAGCATAAACCATTCCGGAGTCACCCACTATATCCG
AGATGTGGGATACCGATCGCCCAAACCCAGCTCCCAGGTATAGGACCTTT
GAGCCAATTTGCAGATGCAAATCACTGACACCACCCATTATTCCAGCTGC
CAGTTTGGATTGGAAGGGAGACCAGACTCGGAATTCACATCGCATTTCCC
GGTATTCCGAAATGACCCTCCGCTCACCGTAGTCATCCGCACTGGAGCTC
GTATTCCTGGTGAGCAATTGTATGGCATCGAAGCGGTTGCGCAACAAATA
GACGCCGTAATGTCGGTGCGGTTCAATGCGGTCTGAGGTTCC
BS17545.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-PA | 1050 | CG10909-RA | 325..1050 | 742..17 | 3630 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-RA | 1173 | CG10909-RA | 387..1112 | 742..17 | 3630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12910181..12910906 | 17..742 | 3630 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:06:14 has no hits.
BS17545.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:48:58 Download gff for
BS17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-PA | 325..1050 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:01 Download gff for
BS17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 387..1112 | 17..742 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:37 Download gff for
BS17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10909-RA | 387..1112 | 17..742 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:37 Download gff for
BS17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12910181..12910906 | 17..742 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:01 Download gff for
BS17545.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8735903..8736628 | 17..742 | 100 | | Plus |
BS17545.pep Sequence
Translation from 16 to 1065
> BS17545.pep
MSMESKSKRRSPPSSTLEEEVPGKTIHPEDPKITSKNFENPTKETSIQSP
IKNSIKPSWNPEPKITRTSIWDIESAGGDSIQNDCQSECNVEDQGHEQEV
TLETRIFSGTSDRIEPHRHYGVYLLRNRFDAIQLLTRNTSSSADDYGERR
VISEYREMRCEFRVWSPFQSKLAAGIMGGVSDLHLQIGSKVLYLGAGFGR
SVSHISDIVGDSGMVYAVEQIPWAGRQLTIMANRRSNIVPIVEDATMPYK
YRYEVPACIDIIFADLPPSVLIRALMLNARHFLNPGGHFVAYLHSPTSQG
VVFNKDSFAAERRLLKEKQLEPKEMVLLEPFKAGYAFVVGVYIRKDVSL*
BS17545.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10909-PA | 349 | CG10909-PA | 1..349 | 1..349 | 1817 | 100 | Plus |
| Fib-PA | 344 | CG9888-PA | 108..338 | 109..342 | 526 | 46.6 | Plus |
