Clone Sequence Records
BS17546.complete Sequence
1013 bp assembled on 2010-02-09
GenBank Submission: KX801521
> BS17546.complete
GAAGTTATCAGTCGACATGAAATTTATTCCGCTGCACACGACAAACACGG
CGATCGTGTACAAGAACTCGCTGTGCTCCTTTGCCTCGCTTTTGGTCCTG
GCCTTCATTGCGCTTTCTGTGATGCTGCCCGTGCTGCTCGTGTCCTTGCT
GAGTCCCTATTCTGGAATATCAGAATCGAGGGTGCTGTACGAGCAGCCGA
ATGTCGAGTTCAACTACGAGTACATATTCGTGGGCACAACGGATCAGGGG
GAGTACGAGGAGGAGGAATCCCTGGTCGCTTGCAGCAGCTTCAGCCAGTT
CAATGAGCAAATGGAGAGTTATACGAATAGCTGCACCACCACTAGATATT
GGACAGAGGATGTGGACTACGATGGCGTAACAGATCGGGCGCACTTTCAG
CTGGAACTGCAGGATGTGCCCACGCGATTGGTGAGCTTCAATCTGCTGGT
CTTCTTTGAAGCTGAACTGCAGCACAAGTGCGATCTATCGCCTCCGTCCG
TGCTGGCCCATCAGTTACAGCTTCCTCTGCACGCTCGCCTCAGAAATGGA
CACGTTCAACTGAAGGGAGAGCTGCAGCTGAAGCAATACGTAGAGTTCAC
CTGTCCATTTCCGGGACGCAACATCAAGACTCAGTTCCGACAGGTTCAAT
TGGATACGAACTCTACCAACGGAAATATAGATCAGTTCAAGATGGAATCG
CTGCTAGCGCAAGTCAAGGCCAATCCAGCATATTTCCAGCTGGCCGTGCA
GGAGACATACTACAGAGAAACGTCAGCGCGCTTGCAGCCTGGTCTCATCA
TTGACCTGGAGCTGGACGTGCTCCAAGTTGCCGCTCGCTATCATCTTAGC
ATTTGGGAACGGCTTGGACAGTTCTGGCTGTACTTCGCCTCCTTCTTCGG
CATCTCGTTTTACATAATGAACAAGCTGAAGGACTTTCTCTTCGGACGCC
ACATCGTTCGCTCCTGGGAGATCATACCGTGGAAAAAGCTCTACTGAAAG
CTTTCTAGACCAT
BS17546.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1032 | CG14020-PB | 1..981 | 17..997 | 4905 | 100 | Plus |
| CG14020-RA | 981 | CG14020-PA | 1..981 | 17..997 | 4905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1213 | CG14020-RB | 106..1086 | 17..997 | 4905 | 100 | Plus |
| CG14020-RA | 1213 | CG14020-RA | 106..1086 | 17..997 | 4905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5517842..5518822 | 17..997 | 4905 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:52 has no hits.
BS17546.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:28:09 Download gff for
BS17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:56 Download gff for
BS17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 1..980 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:37:01 Download gff for
BS17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 106..1085 | 17..996 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:28:09 Download gff for
BS17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 1..981 | 17..997 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:17 Download gff for
BS17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 106..1085 | 17..996 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:17 Download gff for
BS17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5517842..5518821 | 17..996 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:37:01 Download gff for
BS17546.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5517842..5518821 | 17..996 | 100 | | Plus |
BS17546.3prime Sequence
847 bp (728 high quality bases) assembled on 2007-05-15
> BS17546.3prime
ATGGTCTAGAAAGCTTTCAGTAGAGCTTTTTCCACGGTATGATCTCCCAG
GAGCGAACGATGTGGCGTCCGAAGAGAAAGTCCTTCAGCTTGTTCATTAT
GTAAAACGAGATGCCGAAGAAGGAGGCGAAGTACAGCCAGAACTGTCCAA
GCCGTTCCCAAATGCTAAGATGATAGCGAGCGGCAACTTGGAGCACGTCC
AGCTCCAGGTCAATGATGAGACCAGGCTGCAAGCGCGCTGACGTTTCTCT
GTAGTATGTCTCCTGCACGGCCAGCTGGAAATATGCTGGATTGGCCTTGA
CTTGCGCTAGCAGCGATTCCATCTTGAACTGATCTATATTTCCGTTGGTA
GAGTTCGTATCCAATTGAACCTGTCGGAACTGAGTCTTGATGTTGCGTCC
CGGAAATGGACAGGTGAACTCTACGTATTGCTTCAGCTGCAGCTCTCCCT
TCAGTTGAACGTGTCCATTTCTGAGGCGAGCGTGCAGAGGAAGCTGTAAC
TGATGGGCCAGCACGGACGGAGGCGATAGATCGCACTTGTGCTGCAGTTC
AGCTTCAAAGAAGACCAGCAGATTGAAGCTCACCAATCGCGTGGGCACAT
CCTGCAGTTCCAGCTGAAAGTGCGCCCGATCTGTTACGCCATCGTAGTCC
ACATCCTCTGTCCAATATCTAGTGGTGGTGCAGCTATTCGTATAACTCTC
CATTTGCTCATTGAACTGGCTGAAGCTGCTGNCAGCGACCAGGGATTCCT
CCTCCTCGTACTCCCCCTGATCCGTTGTGCCCACGAATATGTACTCGTAG
TTGAACTCGACATTCGGCTGCTCGTACAGCACCCTCGATTCTGATAT
BS17546.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-PA | 981 | CG14020-RA | 151..981 | 847..17 | 4111 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:32:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1213 | CG14020-RB | 256..1086 | 847..17 | 4129 | 99.8 | Minus |
| CG14020-RA | 1213 | CG14020-RA | 256..1086 | 847..17 | 4129 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5517992..5518822 | 847..17 | 4129 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:32:07 has no hits.
BS17546.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:51:54 Download gff for
BS17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-PA | 151..981 | 17..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:02 Download gff for
BS17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 256..1094 | 9..847 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:04 Download gff for
BS17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 256..1094 | 9..847 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:04 Download gff for
BS17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5517992..5518830 | 9..847 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:02 Download gff for
BS17546.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5517992..5518830 | 9..847 | 99 | | Minus |
BS17546.5prime Sequence
911 bp (734 high quality bases) assembled on 2007-05-15
> BS17546.5prime
GAAGTTATCAGTCGACATGAAATTTATTCCGCTGCACACGACAAACACGG
CGATCGTGTACAAGAACTCGCTGTGCTCCTTTGCCTCGCTTTTGGTCCTG
GCCTTCATTGCGCTTTCTGTGATGCTGCCCGTGCTGCTCGTGTCCTTGCT
GAGTCCCTATTCTGGAATATCAGAATCGAGGGTGCTGTACGAGCAGCCGA
ATGTCGAGTTCAACTACGAGTACATATTCGTGGGCACAACGGATCAGGGG
GAGTACGAGGAGGAGGAATCCCTGGTCGCTTGCAGCAGCTTCAGCCAGTT
CAATGAGCAAATGGAGAGTTATACGAATAGCTGCACCACCACTAGATATT
GGACAGAGGATGTGGACTACGATGGCGTAACAGATCGGGCGCACTTTCAG
CTGGAACTGCAGGATGTGCCCACGCGATTGGTGAGCTTCAATCTGCTGGT
CTTCTTTGAAGCTGAACTGCAGCACAAGTGCGATCTATCGCCTCCGTCCG
TGCTGGCCCATCAGTTACAGCTTCCTCTGCACGCTCGCCTCAGAAATGGA
CACGTTCAACTGAAGGGAGAGCTGCAGCTGAAGCAATACGTAGAGTTCAC
CTGTCCATTTCCGGGACGCAACATCAAGACTCAGTTCCGACAGGTTCAAT
TGGATACGAACTCTACCAACGGAAATATAGATCAGTTCAAGATGGAATCG
CTGCTAGCGCAAGTCAAGGCCAATCCAGCATATTTCCAGCTGGCCGTGCA
GGAGACATACTACAGAGAAACGTCAGCGCGCTTGCAGCCTGGTCTCATCA
TTGACCTGGAGCTGGACGTGCTCCAAGTTGCCGCTCGCTATCATCTTAGC
ATTTGGGAACGGCTTGGACAGTTCTGGCTGTACTTCGCCTCCTTCTTCCG
CATCTCGTTTT
BS17546.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-PA | 981 | CG14020-RA | 1..895 | 17..911 | 4450 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:41:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-RB | 1213 | CG14020-RB | 106..1000 | 17..911 | 4460 | 99.9 | Plus |
| CG14020-RA | 1213 | CG14020-RA | 106..1000 | 17..911 | 4460 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:41:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5517842..5518736 | 17..911 | 4460 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:41:47 has no hits.
BS17546.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:44 Download gff for
BS17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-PA | 1..895 | 17..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:20:58 Download gff for
BS17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 99..1000 | 10..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:22 Download gff for
BS17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14020-RA | 99..1000 | 10..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:25:22 Download gff for
BS17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5517835..5518736 | 10..911 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:20:58 Download gff for
BS17546.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5517835..5518736 | 10..911 | 99 | | Plus |
BS17546.pep Sequence
Translation from 16 to 996
> BS17546.pep
MKFIPLHTTNTAIVYKNSLCSFASLLVLAFIALSVMLPVLLVSLLSPYSG
ISESRVLYEQPNVEFNYEYIFVGTTDQGEYEEEESLVACSSFSQFNEQME
SYTNSCTTTRYWTEDVDYDGVTDRAHFQLELQDVPTRLVSFNLLVFFEAE
LQHKCDLSPPSVLAHQLQLPLHARLRNGHVQLKGELQLKQYVEFTCPFPG
RNIKTQFRQVQLDTNSTNGNIDQFKMESLLAQVKANPAYFQLAVQETYYR
ETSARLQPGLIIDLELDVLQVAARYHLSIWERLGQFWLYFASFFGISFYI
MNKLKDFLFGRHIVRSWEIIPWKKLY*
BS17546.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14020-PA | 326 | CG14020-PA | 1..326 | 1..326 | 1702 | 100 | Plus |
| CG14020-PB | 343 | CG14020-PB | 1..326 | 1..326 | 1702 | 100 | Plus |
