Clone Sequence Records
BS17547.complete Sequence
995 bp assembled on 2010-02-09
GenBank Submission: KX800931
> BS17547.complete
GAAGTTATCAGTCGACATGCCTTACCACCGACTGAATATTTTGGGTCTGT
TGATTCTATCTTTGGTCTTGGCCAAGGCGGATGTGGGCTACCATTACAGC
AGACCAACGAGACCCACGGCTCCCTCGGCACCTTCGGGCGCAGGATCGGT
GTATACGGGTCACCAGTTCAGTGCGCTGCCCACCATCCATCCACTGCCTC
CGATTCCGGCACTTCCTCCACTGCCCACGGCCAGAGTTCCAATACCCAGG
AGTCGTCCCTCAGCTCCGGCTGCCAGCATCGTTAGTCATTATCTGCCACC
GAAGCCGGTGGTCTCCACATATATTCCACCGCCAGCTGCTGCACCCATCT
CATCTATAAGTTTCCACGGAACGCCCACTTTCAAACCCATCTACGGACCT
CCACCGCCGGCAAGGACTTCTCTTGCCACGCCCATCGTGGTGCCGCCCAC
GGGACCAGCTCCACTGACAGCGGGAGGAAATCTGCGCATTCCCTTCGGCA
AGCAGGCGTTGATCTCGCCCGGAGAATCCTACGTGGCCAATGGCAGGCAG
CTGAAGCAATATGCCGTCATCGAGATTATTGACAACGACATAGACGAGAC
CCCGGCTCCATTCCTGTCCGGAACGAGTTTCTTCGATCGCTATGGAGCAC
ATGTTGGTGCTCCATCCGCCAATGGAATCCAGCTGGACTCACGGGCTAAT
TCCTTGCTGCTGGAGCAGCAGCAGCTTGCCATCCAGCCCAGATCCCAGGG
TGGTGCATCGGGAGGGGATGCCATTGCCTTGGGATCGGGCGGCCTGGGCT
TTGTGCGTTTGCCCAACGGTAATGTGTATCTCGGCTCCGGATCCCTGGGC
TACATCAGTGGTCAGCAGCGGGTGGCCTCCGTTCTGGAGGCACGCACTCG
ATCGGAATCCACGTCGGATGCCCTGCACTTCGGTCATGGTCCGCTTGGCG
GAGTGGACAACCTGCTGAGGTTCAAGTAGAAGCTTTCTAGACCAT
BS17547.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 963 | CG15414-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 1402 | CG15414-RA | 241..1204 | 17..980 | 4820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3480953..3481916 | 980..17 | 4820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:01 has no hits.
BS17547.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:50 Download gff for
BS17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:41 Download gff for
BS17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 218..1180 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:40 Download gff for
BS17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 241..1203 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:50 Download gff for
BS17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 1..963 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:58 Download gff for
BS17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 241..1203 | 17..979 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:58 Download gff for
BS17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3480954..3481916 | 17..979 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:40 Download gff for
BS17547.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3480954..3481916 | 17..979 | 100 | | Minus |
BS17547.3prime Sequence
856 bp (734 high quality bases) assembled on 2007-05-15
> BS17547.3prime
ATGGTCTAGAAAGCTTCTACTTGAACCTCAGCAGGTTGTCCACTCCGCCA
AGCGGACCATGACCGAAGTGCAGGGCATCCGACGTGGATTCCGATCGAGT
GCGTGCCTCCAGAACGGAGGCCACCCGCTGCTGACCACTGATGTAGCCCA
GGGATCCGGAGCCGAGATACACATTACCGTTGGGCAAACGCACAAAGCCC
AGGCCGCCCGATCCCAAGGCAATGGCATCCCCTCCCGATGCACCACCCTG
GGATCTGGGCTGGATGGCAAGCTGCTGCTGCTCCAGCAGCAAGGAATTAG
CCCGTGAGTCCAGCTGGATTCCATTGGCGGATGGAGCACCAACATGTGCT
CCATAGCGATCGAAGAAACTCGTTCCGGACAGGAATGGAGCCGGGGTCTC
GTCTATGTCGTTGTCAATAATCTCGATGACGGCATATTGCTTCAGCTGCC
TGCCATTGGCCACGTAGGATTCTCCGGGCGAGATCAACGCCTGCTTGCCG
AAGGGAATGCGCAGATTTCCTCCCGCTGTCAGTGGAGCTGGTCCCGTGGG
CGGCACCACGATGGGCGTGGCAAGAGAAGTCCTTGCCGGCGGTGGAGGTC
CGTAGATGGGTTTGAAAGTGGGCGTTCCGTGGAAACTTATAGATGAGATG
GGTGCAGCAGCTGGCGGTGGAATATATGTGGAGACCACCGGCTTCGGTGG
CAGATAATGACTAACGATGCTGGCAGCCGGAGCTGAGGGACGACTCCTGG
GTATTGGAACTCTGGCCGTGGGCAGTGGAGGAAGTGCCGGAATCGGAGGC
AGTGGATGGATGGTGGGCAGCGCACTGAACTGGTGACCCGTATACACCGA
TCCTGC
BS17547.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-PA | 963 | CG15414-RA | 124..963 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 1402 | CG15414-RA | 364..1204 | 856..16 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3480953..3481793 | 16..856 | 4205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:25:23 has no hits.
BS17547.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:03 Download gff for
BS17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-PA | 124..963 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:13:58 Download gff for
BS17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 364..1214 | 8..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:24 Download gff for
BS17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 364..1214 | 8..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:24 Download gff for
BS17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3480943..3481793 | 8..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:13:58 Download gff for
BS17547.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3480943..3481793 | 8..856 | 99 | | Plus |
BS17547.5prime Sequence
868 bp (777 high quality bases) assembled on 2007-05-15
> BS17547.5prime
GAAGTTATCAGTCGACATGCCTTACCACCGACTGAATATTTTGGGTCTGT
TGATTCTATCTTTGGTCTTGGCCAAGGCGGATGTGGGCTACCATTACAGC
AGACCAACGAGACCCACGGCTCCCTCGGCACCTTCGGGCGCAGGATCGGT
GTATACGGGTCACCAGTTCAGTGCGCTGCCCACCATCCATCCACTGCCTC
CGATTCCGGCACTTCCTCCACTGCCCACGGCCAGAGTTCCAATACCCAGG
AGTCGTCCCTCAGCTCCGGCTGCCAGCATCGTTAGTCATTATCTGCCACC
GAAGCCGGTGGTCTCCACATATATTCCACCGCCAGCTGCTGCACCCATCT
CATCTATAAGTTTCCACGGAACGCCCACTTTCAAACCCATCTACGGACCT
CCACCGCCGGCAAGGACTTCTCTTGCCACGCCCATCGTGGTGCCGCCCAC
GGGACCAGCTCCACTGACAGCGGGAGGAAATCTGCGCATTCCCTTCGGCA
AGCAGGCGTTGATCTCGCCCGGAGAATCCTACGTGGCCAATGGCAGGCAG
CTGAAGCAATATGCCGTCATCGAGATTATTGACAACGACATAGACGAGAC
CCCGGCTCCATTCCTGTCCGGAACGAGTTTCTTCGATCGCTATGGAGCAC
ATGTTGGTGCTCCATCCGCCAATGGAATCCAGCTGGACTCACGGGCTAAT
TCCTTGCTGCTGGAGCAGCAGCAGCTTGCCATCCAGCCCAGATCCCAGGG
TGGTGCATCGGGAGGGGATGCCATTGCCTTGGGATCGGGCGGCCTGGGCT
TTGTGCGTTTGCCAACGGTAATGTGTATCTCGGCTCCGGATCCCTGGGCT
ACATCAGTGGTCAGCAGC
BS17547.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-PA | 963 | CG15414-RA | 1..797 | 17..813 | 3985 | 100 | Plus |
| CG15414-PA | 963 | CG15414-RA | 797..853 | 812..868 | 285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:32:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-RA | 1402 | CG15414-RA | 241..1093 | 17..868 | 4240 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:32:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3481064..3481916 | 868..17 | 4215 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:32:13 has no hits.
BS17547.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:45:53 Download gff for
BS17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-PA | 1..853 | 17..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:03 Download gff for
BS17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 234..1093 | 10..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:18:26 Download gff for
BS17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15414-RA | 234..1093 | 10..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:18:26 Download gff for
BS17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3481064..3481916 | 17..868 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:03 Download gff for
BS17547.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3481064..3481916 | 17..868 | 99 | <- | Minus |
BS17547.pep Sequence
Translation from 16 to 978
> BS17547.pep
MPYHRLNILGLLILSLVLAKADVGYHYSRPTRPTAPSAPSGAGSVYTGHQ
FSALPTIHPLPPIPALPPLPTARVPIPRSRPSAPAASIVSHYLPPKPVVS
TYIPPPAAAPISSISFHGTPTFKPIYGPPPPARTSLATPIVVPPTGPAPL
TAGGNLRIPFGKQALISPGESYVANGRQLKQYAVIEIIDNDIDETPAPFL
SGTSFFDRYGAHVGAPSANGIQLDSRANSLLLEQQQLAIQPRSQGGASGG
DAIALGSGGLGFVRLPNGNVYLGSGSLGYISGQQRVASVLEARTRSESTS
DALHFGHGPLGGVDNLLRFK*
BS17547.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15414-PA | 320 | CG15414-PA | 1..320 | 1..320 | 1663 | 100 | Plus |
| CG31626-PB | 285 | CG31626-PB | 8..148 | 13..150 | 152 | 34 | Plus |
| CG31626-PA | 285 | CG31626-PA | 8..148 | 13..150 | 152 | 34 | Plus |
