Clone Sequence Records
BS17548.complete Sequence
1046 bp assembled on 2010-02-09
GenBank Submission: KX805553
> BS17548.complete
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGCCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCCAGACCAATGGTGGCGTAAAGGGATTCGTAAAGCCCATTGGAAA
AGCCGCATTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAG
ACCTTGCAGGAACTTGTTCCCATGCCCGGTCCGTGATTTACTACGCCGAG
GCCATCACCGAGAATAGTTTCGGAGCTATCCAGTGCCAGGACTACCAGGC
TGCTCTGGACAATGAGTGTGGCAGCTCCTTCAGCAGCGTCCGCATGGCAG
AGGATACGAATGCGTACAATGTGGAGGGCCACTTCTATGTGCCTGTAAAC
AGTGAGGCTCCATTCGGGCAAACTGAATAGAAGCTTTCTAGACCAT
BS17548.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1014 | CG17192-PA | 1..1014 | 17..1030 | 5070 | 100 | Plus |
CG17191-RA | 1014 | CG17191-PA | 45..1001 | 61..1017 | 1440 | 76.7 | Plus |
CG6283-RA | 1020 | CG6283-PA | 355..1007 | 365..1017 | 700 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1052 | CG17192-RA | 4..1021 | 15..1032 | 5090 | 100 | Plus |
CG17191-RA | 1090 | CG17191-RA | 69..1025 | 61..1017 | 1440 | 76.7 | Plus |
CG6283-RA | 1083 | CG6283-RA | 380..1032 | 365..1017 | 700 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27017211..27018187 | 1032..56 | 4885 | 100 | Minus |
3R | 32079331 | 3R | 27018673..27019629 | 1017..61 | 1440 | 76.7 | Minus |
3R | 32079331 | 3R | 27020289..27020941 | 1017..365 | 700 | 73.8 | Minus |
3R | 32079331 | 3R | 27022113..27022510 | 1017..620 | 385 | 73.1 | Minus |
3R | 32079331 | 3R | 27025006..27025403 | 1017..620 | 310 | 71.9 | Minus |
3R | 32079331 | 3R | 27018240..27018284 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:09:14 has no hits.
BS17548.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:53 Download gff for
BS17548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 1..1014 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:43 Download gff for
BS17548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 6..1019 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:44 Download gff for
BS17548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 6..1019 | 17..1030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:53 Download gff for
BS17548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 2..1021 | 13..1032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:01 Download gff for
BS17548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 6..1019 | 17..1030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:01 Download gff for
BS17548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27017213..27018186 | 57..1030 | 100 | <- | Minus |
3R | 27018243..27018282 | 17..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:44 Download gff for
BS17548.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22842935..22843908 | 57..1030 | 100 | <- | Minus |
arm_3R | 22843965..22844004 | 17..56 | 100 | | Minus |
BS17548.3prime Sequence
793 bp (775 high quality bases) assembled on 2007-05-15
> BS17548.3prime
ATGGTCTAGAAAGCTTCTATTCAGTTTGCCCGAATGGAGCCTCACTGTTT
ACAGGCACATAGAAGTGGCCCTCCACATTGTACGCATTCGTATCCTCTGC
CATGCGGACGCTGCTGAAGGAGCTGCCACACTCATTGTCCAGAGCAGCCT
GGTAGTCCTGGCACTGGATAGCTCCGAAACTATTCTCGGTGATGGCCTCG
GCGTAGTAAATCACGGACCGGGCATGGGAACAAGTTCCTGCAAGGTCTAC
TCCACATCCTGGTTGTTTCCGTCCTCCACTCACATAGAATGCGGCTTTTC
CAATGGGCTTTACGAATCCCTTTACGCCACCATTGGTCTGGATGGACTCG
ACATAGAAGGCATCTTCGCTAGATAGACGCTTGTCCGGGTTATCGTAGCT
GAAAAGGGGCAGGGCAGGATCCAGACCCACAATCGTGTGGACTCTCTTCT
GCCCAACTTGCTTACCAGCATAACCAGCCACATGGGCACCCAAACTATGT
CCAATCACCTCAAGGGTTTCAAGTGACATATCGTGATTTTCGTGCATGTA
CTGGATCATCTCTCCCACTTTGGTTCCAGCTCCAGGAACAGCTCGTACGG
ACATGGCATAGTCAACGGACTGGGACCGAGCCCAGTTCACAACGATCACG
TTAAAGTCTCCCTTTGAGAGCCAGGCCTTGGTTATATCGACATTCATGCT
ATCGGTATATTTTCCCTTCCATCCATGAATGACAAAACGCGTTCCATGGT
CCTTGTTGAAATGAGAAGCTACAATTGAAGAAGCATCGGCAGT
BS17548.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-PA | 1014 | CG17192-RA | 238..1014 | 793..17 | 3885 | 100 | Minus |
CG6283-PA | 1020 | CG6283-RA | 598..647 | 439..390 | 175 | 94 | Minus |
CG17191-PA | 1014 | CG17191-RA | 436..476 | 595..555 | 155 | 95.1 | Minus |
CG17191-PA | 1014 | CG17191-RA | 663..701 | 368..330 | 145 | 94.8 | Minus |
CG17191-PA | 1014 | CG17191-RA | 529..572 | 502..459 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1052 | CG17192-RA | 243..1021 | 793..15 | 3895 | 100 | Minus |
CG17191-RA | 1090 | CG17191-RA | 268..1025 | 787..30 | 1180 | 77.2 | Minus |
CG6283-RA | 1083 | CG6283-RA | 380..1032 | 682..30 | 715 | 74.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27017211..27017989 | 15..793 | 3895 | 100 | Plus |
3R | 32079331 | 3R | 27018673..27019430 | 30..787 | 1165 | 76.9 | Plus |
3R | 32079331 | 3R | 27020289..27020941 | 30..682 | 700 | 73.8 | Plus |
3R | 32079331 | 3R | 27022113..27022510 | 30..427 | 385 | 73.1 | Plus |
3R | 32079331 | 3R | 27025006..27025403 | 30..427 | 310 | 71.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:22 has no hits.
BS17548.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:11 Download gff for
BS17548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-PA | 238..1014 | 17..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:41 Download gff for
BS17548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 243..1021 | 15..793 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:11 Download gff for
BS17548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 243..1021 | 15..793 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:11 Download gff for
BS17548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27017211..27017989 | 15..793 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:41 Download gff for
BS17548.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22842933..22843711 | 15..793 | 100 | | Plus |
BS17548.5prime Sequence
843 bp (699 high quality bases) assembled on 2007-05-15
> BS17548.5prime
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGCCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCCAGACCAATGGTGGCGTAAAGGGATTCGTAAAGCCCATTGGAAA
AAGCGCATTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAG
ACCTTGCAGGAACTTGTTCCCATGCCCGGTCCGTGATTTACTA
BS17548.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-PA | 1014 | CG17192-RA | 1..827 | 17..843 | 4085 | 99.7 | Plus |
CG6283-PA | 1020 | CG6283-RA | 598..647 | 608..657 | 175 | 94 | Plus |
CG17191-PA | 1014 | CG17191-RA | 436..476 | 452..492 | 155 | 95.1 | Plus |
CG17191-PA | 1014 | CG17191-RA | 663..701 | 679..717 | 145 | 94.8 | Plus |
CG17191-PA | 1014 | CG17191-RA | 529..572 | 545..588 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-RA | 1052 | CG17192-RA | 4..832 | 15..843 | 4115 | 99.8 | Plus |
CG17191-RA | 1090 | CG17191-RA | 69..797 | 61..789 | 1275 | 78.8 | Plus |
CG6283-RA | 1083 | CG6283-RA | 380..759 | 365..744 | 580 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 27017400..27018187 | 843..56 | 3910 | 99.7 | Minus |
3R | 32079331 | 3R | 27018901..27019629 | 789..61 | 1260 | 78.2 | Minus |
3R | 32079331 | 3R | 27020562..27020941 | 744..365 | 565 | 76.6 | Minus |
3R | 32079331 | 3R | 27022386..27022510 | 744..620 | 265 | 80.8 | Minus |
3R | 32079331 | 3R | 27025260..27025403 | 763..620 | 240 | 77.8 | Minus |
3R | 32079331 | 3R | 27018240..27018284 | 59..15 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:47:30 has no hits.
BS17548.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:02 Download gff for
BS17548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-PA | 1..826 | 17..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:00 Download gff for
BS17548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 1..831 | 13..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:46 Download gff for
BS17548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17192-RA | 1..831 | 13..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:46 Download gff for
BS17548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 27017401..27018186 | 57..842 | 99 | <- | Minus |
3R | 27018243..27018290 | 7..56 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:00 Download gff for
BS17548.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22843123..22843908 | 57..842 | 99 | <- | Minus |
arm_3R | 22843965..22844012 | 7..56 | 92 | | Minus |
BS17548.pep Sequence
Translation from 16 to 1029
> BS17548.pep
MRELFFLAALLVAGNALPIEERINGENGWFVPQEDGTFQWMDKKDAKELL
ENISPLEFRSNEVSFYLYTKQNPTEGQEITADASSIVASHFNKDHGTRFV
IHGWKGKYTDSMNVDITKAWLSKGDFNVIVVNWARSQSVDYAMSVRAVPG
AGTKVGEMIQYMHENHDMSLETLEVIGHSLGAHVAGYAGKQVGQKRVHTI
VGLDPALPLFSYDNPDKRLSSEDAFYVESIQTNGGVKGFVKPIGKAAFYV
SGGRKQPGCGVDLAGTCSHARSVIYYAEAITENSFGAIQCQDYQAALDNE
CGSSFSSVRMAEDTNAYNVEGHFYVPVNSEAPFGQTE*
BS17548.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17192-PA | 337 | CG17192-PA | 1..337 | 1..337 | 1778 | 100 | Plus |
CG17191-PA | 337 | CG17191-PA | 1..337 | 1..337 | 1358 | 73.9 | Plus |
CG6283-PA | 339 | CG6283-PA | 1..339 | 1..337 | 1282 | 69.3 | Plus |
CG6277-PA | 341 | CG6277-PA | 1..338 | 1..334 | 1094 | 61.1 | Plus |
CG6271-PA | 341 | CG6271-PA | 1..338 | 1..334 | 1053 | 59 | Plus |