Clone BS17548 Report

Search the DGRC for BS17548

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG17192-RA
Protein status:BS17548.pep: full length peptide match
Sequenced Size:1046

Clone Sequence Records

BS17548.complete Sequence

1046 bp assembled on 2010-02-09

GenBank Submission: KX805553

> BS17548.complete
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGCCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCCAGACCAATGGTGGCGTAAAGGGATTCGTAAAGCCCATTGGAAA
AGCCGCATTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAG
ACCTTGCAGGAACTTGTTCCCATGCCCGGTCCGTGATTTACTACGCCGAG
GCCATCACCGAGAATAGTTTCGGAGCTATCCAGTGCCAGGACTACCAGGC
TGCTCTGGACAATGAGTGTGGCAGCTCCTTCAGCAGCGTCCGCATGGCAG
AGGATACGAATGCGTACAATGTGGAGGGCCACTTCTATGTGCCTGTAAAC
AGTGAGGCTCCATTCGGGCAAACTGAATAGAAGCTTTCTAGACCAT

BS17548.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1014 CG17192-PA 1..1014 17..1030 5070 100 Plus
CG17191-RA 1014 CG17191-PA 45..1001 61..1017 1440 76.7 Plus
CG6283-RA 1020 CG6283-PA 355..1007 365..1017 700 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1052 CG17192-RA 4..1021 15..1032 5090 100 Plus
CG17191-RA 1090 CG17191-RA 69..1025 61..1017 1440 76.7 Plus
CG6283-RA 1083 CG6283-RA 380..1032 365..1017 700 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27017211..27018187 1032..56 4885 100 Minus
3R 32079331 3R 27018673..27019629 1017..61 1440 76.7 Minus
3R 32079331 3R 27020289..27020941 1017..365 700 73.8 Minus
3R 32079331 3R 27022113..27022510 1017..620 385 73.1 Minus
3R 32079331 3R 27025006..27025403 1017..620 310 71.9 Minus
3R 32079331 3R 27018240..27018284 59..15 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:09:14 has no hits.

BS17548.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:53 Download gff for BS17548.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 1..1014 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:43 Download gff for BS17548.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 6..1019 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:44 Download gff for BS17548.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 6..1019 17..1030 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:53 Download gff for BS17548.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 2..1021 13..1032 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:01 Download gff for BS17548.complete
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 6..1019 17..1030 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:01 Download gff for BS17548.complete
Subject Subject Range Query Range Percent Splice Strand
3R 27017213..27018186 57..1030 100 <- Minus
3R 27018243..27018282 17..56 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:44 Download gff for BS17548.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22842935..22843908 57..1030 100 <- Minus
arm_3R 22843965..22844004 17..56 100   Minus

BS17548.3prime Sequence

793 bp (775 high quality bases) assembled on 2007-05-15

> BS17548.3prime
ATGGTCTAGAAAGCTTCTATTCAGTTTGCCCGAATGGAGCCTCACTGTTT
ACAGGCACATAGAAGTGGCCCTCCACATTGTACGCATTCGTATCCTCTGC
CATGCGGACGCTGCTGAAGGAGCTGCCACACTCATTGTCCAGAGCAGCCT
GGTAGTCCTGGCACTGGATAGCTCCGAAACTATTCTCGGTGATGGCCTCG
GCGTAGTAAATCACGGACCGGGCATGGGAACAAGTTCCTGCAAGGTCTAC
TCCACATCCTGGTTGTTTCCGTCCTCCACTCACATAGAATGCGGCTTTTC
CAATGGGCTTTACGAATCCCTTTACGCCACCATTGGTCTGGATGGACTCG
ACATAGAAGGCATCTTCGCTAGATAGACGCTTGTCCGGGTTATCGTAGCT
GAAAAGGGGCAGGGCAGGATCCAGACCCACAATCGTGTGGACTCTCTTCT
GCCCAACTTGCTTACCAGCATAACCAGCCACATGGGCACCCAAACTATGT
CCAATCACCTCAAGGGTTTCAAGTGACATATCGTGATTTTCGTGCATGTA
CTGGATCATCTCTCCCACTTTGGTTCCAGCTCCAGGAACAGCTCGTACGG
ACATGGCATAGTCAACGGACTGGGACCGAGCCCAGTTCACAACGATCACG
TTAAAGTCTCCCTTTGAGAGCCAGGCCTTGGTTATATCGACATTCATGCT
ATCGGTATATTTTCCCTTCCATCCATGAATGACAAAACGCGTTCCATGGT
CCTTGTTGAAATGAGAAGCTACAATTGAAGAAGCATCGGCAGT

BS17548.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-PA 1014 CG17192-RA 238..1014 793..17 3885 100 Minus
CG6283-PA 1020 CG6283-RA 598..647 439..390 175 94 Minus
CG17191-PA 1014 CG17191-RA 436..476 595..555 155 95.1 Minus
CG17191-PA 1014 CG17191-RA 663..701 368..330 145 94.8 Minus
CG17191-PA 1014 CG17191-RA 529..572 502..459 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1052 CG17192-RA 243..1021 793..15 3895 100 Minus
CG17191-RA 1090 CG17191-RA 268..1025 787..30 1180 77.2 Minus
CG6283-RA 1083 CG6283-RA 380..1032 682..30 715 74.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:21
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27017211..27017989 15..793 3895 100 Plus
3R 32079331 3R 27018673..27019430 30..787 1165 76.9 Plus
3R 32079331 3R 27020289..27020941 30..682 700 73.8 Plus
3R 32079331 3R 27022113..27022510 30..427 385 73.1 Plus
3R 32079331 3R 27025006..27025403 30..427 310 71.9 Plus
Blast to na_te.dros performed on 2015-02-13 06:07:22 has no hits.

BS17548.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:11 Download gff for BS17548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-PA 238..1014 17..793 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:41 Download gff for BS17548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 243..1021 15..793 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:11 Download gff for BS17548.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 243..1021 15..793 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:11 Download gff for BS17548.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 27017211..27017989 15..793 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:41 Download gff for BS17548.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22842933..22843711 15..793 100   Plus

BS17548.5prime Sequence

843 bp (699 high quality bases) assembled on 2007-05-15

> BS17548.5prime
GAAGTTATCAGTCGACATGAGGGAGTTATTTTTTCTAGCAGCACTATTAG
TAGCGGGTAATGCCCTTCCTATTGAGGAGCGTATCAATGGCGAAAATGGG
TGGTTTGTGCCCCAGGAGGATGGCACATTTCAGTGGATGGACAAAAAGGA
CGCTAAAGAGCTCTTAGAAAACATTTCCCCTCTCGAATTCCGTTCCAATG
AAGTGTCCTTCTATCTGTACACCAAACAAAACCCGACGGAAGGCCAAGAA
ATTACTGCCGATGCTTCTTCAATTGTAGCTTCTCATTTCAACAAGGACCA
TGGAACGCGTTTTGTCATTCATGGATGGAAGGGAAAATATACCGATAGCA
TGAATGTCGATATAACCAAGGCCTGGCTCTCAAAGGGAGACTTTAACGTG
ATCGTTGTGAACTGGGCTCGGTCCCAGTCCGTTGACTATGCCATGTCCGT
ACGAGCTGTTCCTGGAGCTGGAACCAAAGTGGGAGAGATGATCCAGTACA
TGCACGAAAATCACGATATGTCACTTGAAACCCTTGAGGTGATTGGACAT
AGTTTGGGTGCCCATGTGGCTGGTTATGCTGGTAAGCAAGTTGGGCAGAA
GAGAGTCCACACGATTGTGGGTCTGGATCCTGCCCTGCCCCTTTTCAGCT
ACGATAACCCGGACAAGCGTCTATCTAGCGAAGATGCCTTCTATGTCGAG
TCCATCCAGACCAATGGTGGCGTAAAGGGATTCGTAAAGCCCATTGGAAA
AAGCGCATTCTATGTGAGTGGAGGACGGAAACAACCAGGATGTGGAGTAG
ACCTTGCAGGAACTTGTTCCCATGCCCGGTCCGTGATTTACTA

BS17548.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-PA 1014 CG17192-RA 1..827 17..843 4085 99.7 Plus
CG6283-PA 1020 CG6283-RA 598..647 608..657 175 94 Plus
CG17191-PA 1014 CG17191-RA 436..476 452..492 155 95.1 Plus
CG17191-PA 1014 CG17191-RA 663..701 679..717 145 94.8 Plus
CG17191-PA 1014 CG17191-RA 529..572 545..588 145 93.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-RA 1052 CG17192-RA 4..832 15..843 4115 99.8 Plus
CG17191-RA 1090 CG17191-RA 69..797 61..789 1275 78.8 Plus
CG6283-RA 1083 CG6283-RA 380..759 365..744 580 77.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 27017400..27018187 843..56 3910 99.7 Minus
3R 32079331 3R 27018901..27019629 789..61 1260 78.2 Minus
3R 32079331 3R 27020562..27020941 744..365 565 76.6 Minus
3R 32079331 3R 27022386..27022510 744..620 265 80.8 Minus
3R 32079331 3R 27025260..27025403 763..620 240 77.8 Minus
3R 32079331 3R 27018240..27018284 59..15 225 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:47:30 has no hits.

BS17548.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:02 Download gff for BS17548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-PA 1..826 17..842 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:00 Download gff for BS17548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 1..831 13..842 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:24:46 Download gff for BS17548.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17192-RA 1..831 13..842 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:24:46 Download gff for BS17548.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 27017401..27018186 57..842 99 <- Minus
3R 27018243..27018290 7..56 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:00 Download gff for BS17548.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22843123..22843908 57..842 99 <- Minus
arm_3R 22843965..22844012 7..56 92   Minus

BS17548.pep Sequence

Translation from 16 to 1029

> BS17548.pep
MRELFFLAALLVAGNALPIEERINGENGWFVPQEDGTFQWMDKKDAKELL
ENISPLEFRSNEVSFYLYTKQNPTEGQEITADASSIVASHFNKDHGTRFV
IHGWKGKYTDSMNVDITKAWLSKGDFNVIVVNWARSQSVDYAMSVRAVPG
AGTKVGEMIQYMHENHDMSLETLEVIGHSLGAHVAGYAGKQVGQKRVHTI
VGLDPALPLFSYDNPDKRLSSEDAFYVESIQTNGGVKGFVKPIGKAAFYV
SGGRKQPGCGVDLAGTCSHARSVIYYAEAITENSFGAIQCQDYQAALDNE
CGSSFSSVRMAEDTNAYNVEGHFYVPVNSEAPFGQTE*

BS17548.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17192-PA 337 CG17192-PA 1..337 1..337 1778 100 Plus
CG17191-PA 337 CG17191-PA 1..337 1..337 1358 73.9 Plus
CG6283-PA 339 CG6283-PA 1..339 1..337 1282 69.3 Plus
CG6277-PA 341 CG6277-PA 1..338 1..334 1094 61.1 Plus
CG6271-PA 341 CG6271-PA 1..338 1..334 1053 59 Plus