Clone Sequence Records
BS17552.complete Sequence
1265 bp assembled on 2009-12-07
GenBank Submission: KX805965
> BS17552.complete
GAAGTTATCAGTCGACATGCTGAACGGAAAATTCTACACGGGCTTGCCGC
CCAAAATGGTGGAGCGCCAGGCGGTGAAGGTGTGCAATCGCCAGGAGTCG
CACTTCTTCTGGCCAGACGATTCCCGAGCGGATTCCGCGGTGGAAACCCG
AGCAAAGAGGAGAAACAGCCAGCAGCTGGAGAGGCCTGTGGAAAGGATTA
CTTCCAATCAGAATGTATCCGACGAAGTGGACACACGGCGAATGTTTCAC
AAGGAGTTTGCCAGTTCTTCCATACAGTTCTATGATAATCTGCAGTCTAA
TCCTGGAAATAAACCTTCATTGGCAAGGGGTCTACGCAGAGAAATAACCC
CAAAACTAACCGAAGTGAGACCGCAGGAATCGGATAACAAAGCTGAGGAC
ACCAGCAGCCGTCGCCAGCAGGCTTACAGCTCCAAGATCCAGTTCTACGA
TTATGTAAACGAAGCAGATAACCTAACTCAAAATAACGCCAGGAGACCAC
AAATGGACTTGAATGACAAGCGCGAAGTGGAACTGAATTCCAAGAACAGT
CCCAAGCTGCAGGTCAAAAGAAATGTGCGCAGTTTCAGCGTGGAACTGGA
GCCCAAGGTCACCAAGAAACCCCTGAACGACAGTCCCGAGTGGCGGCGGC
CACGCCCACTGCCCCTGCCCAAAAGGATACTGAAGCAAACGTCACAGGAT
CAGGACCCGTACGACCATCTGGAAAGTCGAGTCCGAAGATTGCAACTAAC
CCGAAGTCCCGGACTGCCCAAAAAGCATGTGACCTACAACGAGGAGGCTG
CCGAGTACGCCTACTACGATGATCGGGTGGATCGCGATGATCGGGAGGAT
CGCGAGGATCGTGAGGAGCCCACCTACGAAACTCGCTACCGTCAGCAGCC
AAATATGCCGACAGGAAGTCGCCAGCAGCAGCAGCAGCAGCAACATCAAC
GCTCTTTTATGGAAACTAGTCGGAGCAAGCCATTAAATAATAATAATAAT
TATCAGGCCAACGGCAATGGTAGGAAAATCTTTCCAAAAATGCCACAGAC
CCAATCCGGAGTGGGTAACACACACACTATCGACGAAGATCCCCCCGTGC
CCTCTGACCCTCGCAAACACCTGCGCAGCAGCCTCTGCTTCAGCGGCGAC
GCTTTGATGGTGGGCGGTACGGCGTCGCAGTCGCCGCCCACTGCGCAGGC
GCGTCGCAGCTCAGCGGGGCAGAGAGTGAGCGTGGGTCTGCCGGACTGAA
AGCTTTCTAGACCAT
BS17552.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1233 | CG15546-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1822 | CG15546-RA | 52..1285 | 16..1249 | 6170 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30874902..30876135 | 1249..16 | 6170 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 01:43:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 4..45 | 575..616 | 111 | 73.8 | Plus |
BS17552.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:54 Download gff for
BS17552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 1..1233 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:05 Download gff for
BS17552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 1..1232 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:11 Download gff for
BS17552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 53..1284 | 17..1248 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:54 Download gff for
BS17552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 1..1233 | 17..1249 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:34 Download gff for
BS17552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 53..1284 | 17..1248 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:34 Download gff for
BS17552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30874903..30876134 | 17..1248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:11 Download gff for
BS17552.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26700625..26701856 | 17..1248 | 100 | | Minus |
BS17552.3prime Sequence
895 bp (710 high quality bases) assembled on 2007-05-15
> BS17552.3prime
ATGGTCTAGAAAGCTTTCAGTCCGGCAGACCCACGCTCACTCTCTGCCCC
GCTGAGCTGCGACGCGCCTGCGCAGTGGGCGGCGACTGCGACGCCGTACC
GCCCACCATCAAAGCGTCGCCGCTGAAGCAGAGGCTGCTGCGCAGGTGTT
TGCGAGGGTCAGAGGGCACGGGGGGATCTTCGTCGATAGTGTGTGTGTTA
CCCACTCCGGATTGGGTCTGTGGCATTTTTGGAAAGATTTTCCTACCATT
GCCGTTGGCCTGATAATTATTATTATTATTTAATGGCTTGCTCCGACTAG
TTTCCATAAAAGAGCGTTGATGTTGCTGCTGCTGCTGCTGCTGGCGACTT
CCTGTCGGCATATTTGGCTGCTGACGGTAGCGAGTTTCGTAGGTGGGCTC
CTCACGATCCTCGCGATCCTCCCGATCATCGCGATCCACCCGATCATCGT
AGTAGGCGTACTCGGCAGCCTCCTCGTTGTAGGTCACATGCTTTTTGGGC
AGTCCGGGACTTCGGGTTAGTTGCAATCTTCGGACTCGACTTTCCAGATG
GTCGTACGGGTCCTGATCCTGTGACGTTTGCTTCAGTATCCTTTTGGGCA
GGGGCAGTGGGCGTGGCCGCCGCCACTCGGGACTGTCGTTCAGGGGTTTC
TTGGTGACCTTGGGCTCCAGTTCCACGCTGAAACTGCGCACATTTCTTTT
GACCTGCAGCTTGGGACTGTTCTTGGAATTCAGTTCCACTTCGCGCTTGT
CATTCAAGTCCATTTGTGGTCTCCTGGCGTTATTTTGAGTTAGGTTATCT
GCTTCGTTTACATAATCGTAGAACTGGATCTTGGAGCTGTAAGCCTGCTG
GCGACGGCTGCTGGTGTCCTCAGCTTTGTTATCCGATTCCTGCGG
BS17552.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-PA | 1233 | CG15546-RA | 355..1233 | 895..17 | 4395 | 100 | Minus |
| CG1770-PB | 3546 | HDAC4-RB | 169..196 | 343..316 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:16:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1822 | CG15546-RA | 407..1285 | 895..17 | 4395 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:16:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30874902..30875780 | 17..895 | 4395 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 15:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 4..45 | 691..650 | 111 | 73.8 | Minus |
BS17552.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:17 Download gff for
BS17552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-PA | 355..1233 | 17..895 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:51:01 Download gff for
BS17552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 407..1290 | 12..895 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:04:59 Download gff for
BS17552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 407..1290 | 12..895 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:04:59 Download gff for
BS17552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30874897..30875780 | 12..895 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:51:01 Download gff for
BS17552.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26700619..26701502 | 12..895 | 99 | | Plus |
BS17552.5prime Sequence
925 bp (739 high quality bases) assembled on 2007-05-15
> BS17552.5prime
GAAGTTATCAGTCGACATGCTGAACGGAAAATTCTACACGGGCTTGCCGC
CCAAAATGGTGGAGCGCCAGGCGGTGAAGGTGTGCAATCGCCAGGAGTCG
CACTTCTTCTGGCCAGACGATTCCCGAGCGGATTCCGCGGTGGAAACCCG
AGCAAAGAGGAGAAACAGCCAGCAGCTGGAGAGGCCTGTGGAAAGGATTA
CTTCCAATCAGAATGTATCCGACGAAGTGGACACACGGCGAATGTTTCAC
AAGGAGTTTGCCAGTTCTTCCATACAGTTCTATGATAATCTGCAGTCTAA
TCCTGGAAATAAACCTTCATTGGCAAGGGGTCTACGCAGAGAAATAACCC
CAAAACTAACCGAAGTGAGACCGCAGGAATCGGATAACAAAGCTGAGGAC
ACCAGCAGCCGTCGCCAGCAGGCTTACAGCTCCAAGATCCAGTTCTACGA
TTATGTAAACGAAGCAGATAACCTAACTCAAAATAACGCCAGGAGACCAC
AAATGGACTTGAATGACAAGCGCGAAGTGGAACTGAATTCCAAGAACAGT
CCCAAGCTGCAGGTCAAAAGAAATGTGCGCAGTTTCAGCGTGGAACTGGA
GCCCAAGGTCACCAAGAAACCCCTGAACGACAGTCCCGAGTGGCGGCGGC
CACGCCCACTGCCCCTGCCCAAAAGGATACTGAAGCAAACGTCACAGGAT
CAGGACCCGTACGACCATCTGGAAAGTCGAGTCCGAAGATTGNCACTAAC
CCGAAGTCCCGGACTGCCCAAAAGCATGTGACCTACAACGAGGAGGCTGC
CGAGTACGCCTACTACGATGATCGGGTGGATCGCGATGATCGGGAGGATC
GCGAGGATCGTGAGGAGCCCACCTACGAAACTCGCTACCGTCAGCAGCCA
AATATGCCGACAGGAAGTCGCCAGC
BS17552.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-PA | 1233 | CG15546-RA | 1..757 | 17..773 | 3741 | 99.7 | Plus |
| CG15546-PA | 1233 | CG15546-RA | 755..910 | 770..925 | 780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-RA | 1822 | CG15546-RA | 52..962 | 16..925 | 4504 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:53:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30875225..30876135 | 925..16 | 4479 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-13 11:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1A | 1757 | Dnet\R1A NEOR1A 1757bp | 4..45 | 575..616 | 111 | 73.8 | Plus |
BS17552.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:07 Download gff for
BS17552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-PA | 1..910 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:04 Download gff for
BS17552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 42..962 | 7..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:16:21 Download gff for
BS17552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15546-RA | 42..962 | 7..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:16:21 Download gff for
BS17552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30875225..30876145 | 7..925 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:04 Download gff for
BS17552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26700947..26701867 | 7..925 | 99 | | Minus |
BS17552.pep Sequence
Translation from 16 to 1248
> BS17552.pep
MLNGKFYTGLPPKMVERQAVKVCNRQESHFFWPDDSRADSAVETRAKRRN
SQQLERPVERITSNQNVSDEVDTRRMFHKEFASSSIQFYDNLQSNPGNKP
SLARGLRREITPKLTEVRPQESDNKAEDTSSRRQQAYSSKIQFYDYVNEA
DNLTQNNARRPQMDLNDKREVELNSKNSPKLQVKRNVRSFSVELEPKVTK
KPLNDSPEWRRPRPLPLPKRILKQTSQDQDPYDHLESRVRRLQLTRSPGL
PKKHVTYNEEAAEYAYYDDRVDRDDREDREDREEPTYETRYRQQPNMPTG
SRQQQQQQQHQRSFMETSRSKPLNNNNNYQANGNGRKIFPKMPQTQSGVG
NTHTIDEDPPVPSDPRKHLRSSLCFSGDALMVGGTASQSPPTAQARRSSA
GQRVSVGLPD*
BS17552.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15546-PA | 410 | CG15546-PA | 1..410 | 1..410 | 2154 | 100 | Plus |
