Clone BS17553 Report

Search the DGRC for BS17553

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG2053-RA
Protein status:BS17553.pep: full length peptide match
Sequenced Size:929

Clone Sequence Records

BS17553.complete Sequence

929 bp assembled on 2010-02-09

GenBank Submission: KX803303

> BS17553.complete
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATTCGGAACGGCTATTTTTGCCAGGAAG
GTTTAGTGGGCTTCGAGAGCGCTTCTCTAGAGCTAGCTGATCTTAACCGT
AAGCTCAGTAAAAATGAGGAAAAGGACAAGGTTTGTGATGATGCCATGCC
GGAAAACCATTGAAAGCTTTCTAGACCAT

BS17553.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 897 CG2053-PB 1..897 17..913 4485 100 Plus
CG2053-RA 897 CG2053-PA 1..897 17..913 4485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 1374 CG2053-RB 154..1051 17..914 4490 100 Plus
CG2053-RA 1231 CG2053-RA 154..1051 17..914 4490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32038483..32039347 17..881 4325 100 Plus
Blast to na_te.dros performed on 2014-11-28 04:37:39 has no hits.

BS17553.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:55 Download gff for BS17553.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 1..897 17..913 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:35 Download gff for BS17553.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 111..1006 17..912 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:35 Download gff for BS17553.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 111..1006 17..912 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:16 Download gff for BS17553.complete
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 154..1049 17..912 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:16 Download gff for BS17553.complete
Subject Subject Range Query Range Percent Splice Strand
3R 32038483..32039347 17..881 100 -> Plus
3R 32039398..32039428 882..912 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:35 Download gff for BS17553.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27864205..27865069 17..881 100 -> Plus
arm_3R 27865120..27865150 882..912 100   Plus

BS17553.3prime Sequence

859 bp (818 high quality bases) assembled on 2007-05-15

> BS17553.3prime
ATGGTCTAGAAAGCTTTCAATGGTTTTCCGGCATGGCATCATCACAAACC
TTGTCCTTTTCCTCATTTTTACTGAGCTTACGGTTAAGATCAGCTAGCTC
TAGAGAAGCGCTCTCGAAGCCCACTAAACCTTCCTGGCAAAAATAGCCGT
TCCGAATCTGAGCCGGCAATAGCTTAAGGATCAGCTCCAGATTTTGGGGA
TGATCAGCCAGACGAGAATAGATCCTTACTACATGTTTAAGGACCCTAGG
CTCCGGTTCCAGTGTGAGTTGGTGCACAACCCTGGCCAAAGTATGGATCA
GATGCAGCTTTCGTGCCAGTCTTCGACTGGCAAACTTTAAGCCCACTTCA
TGTTCTAAGGTGCGGTACAAGACAAATGCACAGAGCACCTTACTCATTGT
GGTACCAAACTCCAGCTGCCGCAGGGTAAGTGGAATTAATTCAGTGCCCA
AAAAATAAGATACGATCTCCGGATGATCTGATTTCAGTAGACCGCAAATG
ACGCCCAAGACAGAGAGACGAACATGCTCAACGGCGCGAGTTTGAGAAGT
CATTTTAAGCAATGGCATCAAATAGCACATGAATTGGCATCGTATGAGTT
GAATACCAATGAAGGGATGTGATGCCATAGCCTGAATCAGCCCAATGGCA
GTGCAAATCCGGTGCGACTGTTGGCCGGTTAATTCAATTTCTTGATAAAT
GGCCGGATATATTGACACAATCTCTTGTAGCAAGCCACTCACAGCTCCAA
AGGAATGCCATAGCAAGAGTCCTAGGCTGTCAATGTGGGTGCGCCTTTCG
AATAGCTCCAGCATCGCCCAGAGACGCGTTTCTTTGTTGCAAAGATTGGC
GATCCAGCC

BS17553.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-PA 897 CG2053-RA 55..897 859..17 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 1374 CG2053-RB 208..1051 859..16 4220 100 Minus
CG2053-RA 1231 CG2053-RA 208..1051 859..16 4220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32038537..32039347 859..49 4055 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:25:48 has no hits.

BS17553.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:26 Download gff for BS17553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-PA 55..897 17..859 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:14:00 Download gff for BS17553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 165..1011 12..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:27 Download gff for BS17553.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 208..1054 12..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:27 Download gff for BS17553.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 32038537..32039347 49..859 100 -> Minus
3R 32039398..32039433 12..48 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:14:00 Download gff for BS17553.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27864259..27865069 49..859 100 -> Minus
arm_3R 27865120..27865155 12..48 97   Minus

BS17553.5prime Sequence

792 bp (769 high quality bases) assembled on 2007-05-15

> BS17553.5prime
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATTCGGAACGGCTATTTTTG

BS17553.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-PA 897 CG2053-RA 1..776 17..792 3880 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:41:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-RB 1374 CG2053-RB 154..929 17..792 3880 100 Plus
CG2053-RA 1231 CG2053-RA 154..929 17..792 3880 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 32038483..32039258 17..792 3880 100 Plus
Blast to na_te.dros performed on 2015-02-11 02:41:43 has no hits.

BS17553.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:15 Download gff for BS17553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-PA 1..776 17..792 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:21 Download gff for BS17553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 111..886 17..792 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:40 Download gff for BS17553.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2053-RA 154..929 17..792 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:40 Download gff for BS17553.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 32038483..32039258 17..792 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:21 Download gff for BS17553.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27864205..27864980 17..792 100   Plus

BS17553.pep Sequence

Translation from 16 to 912

> BS17553.pep
MSAPNMDCEQRGDIDSVFGWIANLCNKETRLWAMLELFERRTHIDSLGLL
LWHSFGAVSGLLQEIVSIYPAIYQEIELTGQQSHRICTAIGLIQAMASHP
FIGIQLIRCQFMCYLMPLLKMTSQTRAVEHVRLSVLGVICGLLKSDHPEI
VSYFLGTELIPLTLRQLEFGTTMSKVLCAFVLYRTLEHEVGLKFASRRLA
RKLHLIHTLARVVHQLTLEPEPRVLKHVVRIYSRLADHPQNLELILKLLP
AQIRNGYFCQEGLVGFESASLELADLNRKLSKNEEKDKVCDDAMPENH*

BS17553.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG2053-PB 298 CG2053-PB 1..298 1..298 1543 100 Plus
CG2053-PA 298 CG2053-PA 1..298 1..298 1543 100 Plus
Rcd-1-PA 304 CG14213-PA 21..267 9..258 469 40 Plus
Rcd-1-PB 304 CG14213-PB 21..267 9..258 469 40 Plus
Rcd-1-PC 301 CG14213-PC 29..264 20..258 457 41 Plus