Clone Sequence Records
BS17553.complete Sequence
929 bp assembled on 2010-02-09
GenBank Submission: KX803303
> BS17553.complete
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATTCGGAACGGCTATTTTTGCCAGGAAG
GTTTAGTGGGCTTCGAGAGCGCTTCTCTAGAGCTAGCTGATCTTAACCGT
AAGCTCAGTAAAAATGAGGAAAAGGACAAGGTTTGTGATGATGCCATGCC
GGAAAACCATTGAAAGCTTTCTAGACCAT
BS17553.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 897 | CG2053-PB | 1..897 | 17..913 | 4485 | 100 | Plus |
CG2053-RA | 897 | CG2053-PA | 1..897 | 17..913 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 1374 | CG2053-RB | 154..1051 | 17..914 | 4490 | 100 | Plus |
CG2053-RA | 1231 | CG2053-RA | 154..1051 | 17..914 | 4490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 32038483..32039347 | 17..881 | 4325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:37:39 has no hits.
BS17553.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:55 Download gff for
BS17553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:35 Download gff for
BS17553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 111..1006 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:35 Download gff for
BS17553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 111..1006 | 17..912 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:16 Download gff for
BS17553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 154..1049 | 17..912 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:16 Download gff for
BS17553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 32038483..32039347 | 17..881 | 100 | -> | Plus |
3R | 32039398..32039428 | 882..912 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:35 Download gff for
BS17553.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27864205..27865069 | 17..881 | 100 | -> | Plus |
arm_3R | 27865120..27865150 | 882..912 | 100 | | Plus |
BS17553.3prime Sequence
859 bp (818 high quality bases) assembled on 2007-05-15
> BS17553.3prime
ATGGTCTAGAAAGCTTTCAATGGTTTTCCGGCATGGCATCATCACAAACC
TTGTCCTTTTCCTCATTTTTACTGAGCTTACGGTTAAGATCAGCTAGCTC
TAGAGAAGCGCTCTCGAAGCCCACTAAACCTTCCTGGCAAAAATAGCCGT
TCCGAATCTGAGCCGGCAATAGCTTAAGGATCAGCTCCAGATTTTGGGGA
TGATCAGCCAGACGAGAATAGATCCTTACTACATGTTTAAGGACCCTAGG
CTCCGGTTCCAGTGTGAGTTGGTGCACAACCCTGGCCAAAGTATGGATCA
GATGCAGCTTTCGTGCCAGTCTTCGACTGGCAAACTTTAAGCCCACTTCA
TGTTCTAAGGTGCGGTACAAGACAAATGCACAGAGCACCTTACTCATTGT
GGTACCAAACTCCAGCTGCCGCAGGGTAAGTGGAATTAATTCAGTGCCCA
AAAAATAAGATACGATCTCCGGATGATCTGATTTCAGTAGACCGCAAATG
ACGCCCAAGACAGAGAGACGAACATGCTCAACGGCGCGAGTTTGAGAAGT
CATTTTAAGCAATGGCATCAAATAGCACATGAATTGGCATCGTATGAGTT
GAATACCAATGAAGGGATGTGATGCCATAGCCTGAATCAGCCCAATGGCA
GTGCAAATCCGGTGCGACTGTTGGCCGGTTAATTCAATTTCTTGATAAAT
GGCCGGATATATTGACACAATCTCTTGTAGCAAGCCACTCACAGCTCCAA
AGGAATGCCATAGCAAGAGTCCTAGGCTGTCAATGTGGGTGCGCCTTTCG
AATAGCTCCAGCATCGCCCAGAGACGCGTTTCTTTGTTGCAAAGATTGGC
GATCCAGCC
BS17553.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-PA | 897 | CG2053-RA | 55..897 | 859..17 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 1374 | CG2053-RB | 208..1051 | 859..16 | 4220 | 100 | Minus |
CG2053-RA | 1231 | CG2053-RA | 208..1051 | 859..16 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 32038537..32039347 | 859..49 | 4055 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:25:48 has no hits.
BS17553.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:26 Download gff for
BS17553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-PA | 55..897 | 17..859 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:14:00 Download gff for
BS17553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 165..1011 | 12..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:58:27 Download gff for
BS17553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 208..1054 | 12..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:58:27 Download gff for
BS17553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 32038537..32039347 | 49..859 | 100 | -> | Minus |
3R | 32039398..32039433 | 12..48 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:14:00 Download gff for
BS17553.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27864259..27865069 | 49..859 | 100 | -> | Minus |
arm_3R | 27865120..27865155 | 12..48 | 97 | | Minus |
BS17553.5prime Sequence
792 bp (769 high quality bases) assembled on 2007-05-15
> BS17553.5prime
GAAGTTATCAGTCGACATGAGTGCCCCAAACATGGATTGTGAACAGCGCG
GCGATATAGATAGCGTCTTCGGCTGGATCGCCAATCTTTGCAACAAAGAA
ACGCGTCTCTGGGCGATGCTGGAGCTATTCGAAAGGCGCACCCACATTGA
CAGCCTAGGACTCTTGCTATGGCATTCCTTTGGAGCTGTGAGTGGCTTGC
TACAAGAGATTGTGTCAATATATCCGGCCATTTATCAAGAAATTGAATTA
ACCGGCCAACAGTCGCACCGGATTTGCACTGCCATTGGGCTGATTCAGGC
TATGGCATCACATCCCTTCATTGGTATTCAACTCATACGATGCCAATTCA
TGTGCTATTTGATGCCATTGCTTAAAATGACTTCTCAAACTCGCGCCGTT
GAGCATGTTCGTCTCTCTGTCTTGGGCGTCATTTGCGGTCTACTGAAATC
AGATCATCCGGAGATCGTATCTTATTTTTTGGGCACTGAATTAATTCCAC
TTACCCTGCGGCAGCTGGAGTTTGGTACCACAATGAGTAAGGTGCTCTGT
GCATTTGTCTTGTACCGCACCTTAGAACATGAAGTGGGCTTAAAGTTTGC
CAGTCGAAGACTGGCACGAAAGCTGCATCTGATCCATACTTTGGCCAGGG
TTGTGCACCAACTCACACTGGAACCGGAGCCTAGGGTCCTTAAACATGTA
GTAAGGATCTATTCTCGTCTGGCTGATCATCCCCAAAATCTGGAGCTGAT
CCTTAAGCTATTGCCGGCTCAGATTCGGAACGGCTATTTTTG
BS17553.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-PA | 897 | CG2053-RA | 1..776 | 17..792 | 3880 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-RB | 1374 | CG2053-RB | 154..929 | 17..792 | 3880 | 100 | Plus |
CG2053-RA | 1231 | CG2053-RA | 154..929 | 17..792 | 3880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 32038483..32039258 | 17..792 | 3880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:41:43 has no hits.
BS17553.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:15 Download gff for
BS17553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-PA | 1..776 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:21 Download gff for
BS17553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 111..886 | 17..792 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:16:40 Download gff for
BS17553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2053-RA | 154..929 | 17..792 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:16:40 Download gff for
BS17553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 32038483..32039258 | 17..792 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:21 Download gff for
BS17553.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27864205..27864980 | 17..792 | 100 | | Plus |
BS17553.pep Sequence
Translation from 16 to 912
> BS17553.pep
MSAPNMDCEQRGDIDSVFGWIANLCNKETRLWAMLELFERRTHIDSLGLL
LWHSFGAVSGLLQEIVSIYPAIYQEIELTGQQSHRICTAIGLIQAMASHP
FIGIQLIRCQFMCYLMPLLKMTSQTRAVEHVRLSVLGVICGLLKSDHPEI
VSYFLGTELIPLTLRQLEFGTTMSKVLCAFVLYRTLEHEVGLKFASRRLA
RKLHLIHTLARVVHQLTLEPEPRVLKHVVRIYSRLADHPQNLELILKLLP
AQIRNGYFCQEGLVGFESASLELADLNRKLSKNEEKDKVCDDAMPENH*
BS17553.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2053-PB | 298 | CG2053-PB | 1..298 | 1..298 | 1543 | 100 | Plus |
CG2053-PA | 298 | CG2053-PA | 1..298 | 1..298 | 1543 | 100 | Plus |
Rcd-1-PA | 304 | CG14213-PA | 21..267 | 9..258 | 469 | 40 | Plus |
Rcd-1-PB | 304 | CG14213-PB | 21..267 | 9..258 | 469 | 40 | Plus |
Rcd-1-PC | 301 | CG14213-PC | 29..264 | 20..258 | 457 | 41 | Plus |