Clone Sequence Records
BS17554.complete Sequence
983 bp assembled on 2010-02-09
GenBank Submission: KX802400
> BS17554.complete
GAAGTTATCAGTCGACATGCCAAAAAAAGTGATCACAAGGCGTCAACGCA
AAGCTGCAGAGTCCCGGCTAAGGGCCACAAAGGAAGCAAGTCAGAAGAAT
TGGCCCAGGATAATAGAAGTTATACCGATTCCCCCAATCTCTCGTTCGAC
TAATTCAACTAGCTCAAAGGAAACATACTCAAAGAAAAAAGATATAGGTA
TGTCCCAGACGACTTTAGATGGAAAGAATGAGAAGGAAAAAACTCCGTCT
TTGGAACAGTCAATCCACGAATCCGAAAAGAAAATTCAGCTGTGTGATGC
TCTGCAAAAAATTCGATTAACTAGTCACAAGAAAACCTTCTTGTCGGAAA
TAAAAAAGAAGGCTTTTGACGCGGAACAATTCCAAAATACCACTTCATCC
GGATATGATAAGGACAATAAATTTATTGCACTGGTTCCAAGGAACACCAA
TAAAGGGGCCAATAAAACTCCAAACTCCAGCGTGCCATTGATGTCCAAAT
TTTGCGAACAAATTAAGTCGCACTTCCACTCTGTCCTGCCGACACGAAAC
CTACTCTGTTCAAAATCCCCAATTCCGATGGAAAAGGAACCTGATCACGG
TGCAGATTTGCTGTTGCCACGACCAGTTTTCAATAACCTGGAGAATGAAG
TTAAAGTCAAATGCTTCAAGCCTTCTGAGCTAGCTAGAAATCCCAAACCG
CCTATTAGGATTTTTGGCATAACAGGCTTCTTTGTCCTAACTGGTACCAA
TGCTCAGTTGTCTTTTCACATCGGCCAACTTGCGATCAGAGGCGTTAGTG
TCCAATCATGTATACATCTGCAAACCGAAATGATGGATAAGGTGGAGGAA
CAACTCGCTAAGCTGACTATGGACCGCAAAAGAATCCTCAACAAAATGCA
TAACAAGCATGCAACACTTGCACAACGTCGAGCTCCGCCAGAGACACATC
ATCAGGGTAAAAATTAAAAGCTTTCTAGACCAT
BS17554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 951 | CG31525-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 1171 | CG31525-RA | 136..1091 | 13..968 | 4765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4427165..4428120 | 13..968 | 4765 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:23 has no hits.
BS17554.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:56 Download gff for
BS17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 1..951 | 17..967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:45 Download gff for
BS17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 140..1081 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:49 Download gff for
BS17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 140..1081 | 17..958 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:57 Download gff for
BS17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 136..1091 | 13..968 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:05 Download gff for
BS17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 140..1081 | 17..958 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:05 Download gff for
BS17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4427169..4428110 | 17..958 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:49 Download gff for
BS17554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 252891..253832 | 17..958 | 100 | | Plus |
BS17554.3prime Sequence
876 bp (842 high quality bases) assembled on 2007-05-15
> BS17554.3prime
ATGGTCTAGAAAGCTTTTAATTTTTACCCTGATGATGTGTCTCTGGCGGA
GCTCGACGTTGTGCAAGTGTTGCATGCTTGTTATGCATTTTGTTGAGGAT
TCTTTTGCGGTCCATAGTCAGCTTAGCGAGTTGTTCCTCCACCTTATCCA
TCATTTCGGTTTGCAGATGTATACATGATTGGACACTAACGCCTCTGATC
GCAAGTTGGCCGATGTGAAAAGACAACTGAGCATTGGTACCAGTTAGGAC
AAAGAAGCCTGTTATGCCAAAAATCCTAATAGGCGGTTTGGGATTTCTAG
CTAGCTCAGAAGGCTTGAAGCATTTGACTTTAACTTCATTCTCCAGGTTA
TTGAAAACTGGTCGTGGCAACAGCAAATCTGCACCGTGATCAGGTTCCTT
TTCCATCGGAATTGGGGATTTTGAACAGAGTAGGTTTCGTGTCGGCAGGA
CAGAGTGGAAGTGCGACTTAATTTGTTCGCAAAATTTGGACATCAATGGC
ACGCTGGAGTTTGGAGTTTTATTGGCCCCTTTATTGGTGTTCCTTGGAAC
CAGTGCAATAAATTTATTGTCCTTATCATATCCGGATGAAGTGGTATTTT
GGAATTGTTCCGCGTCAAAAGCCTTCTTTTTTATTTCCGACAAGAAGGTT
TTCTTGTGACTAGTTAATCGAATTTTTTGCAGAGCATCACACAGCTGAAT
TTTCTTTTCGGATTCGTGGATTGACTGTTCCAAAGACGGAGTTTTTTCCT
TCTCATTCTTTCCATCTAAAGTCGTCTGGGACATACCTATATCTTTTTTC
TTTGAGTATGTTTCCTTTGAGCTAGTTGAATTAGTCGAACGAGAGATTGG
GGGAATCGGTATAACTTCTATTAATC
BS17554.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-PA | 951 | CG31525-RA | 95..951 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 1171 | CG31525-RA | 234..1091 | 873..16 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4427263..4428120 | 873..16 | 4290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:01:12 has no hits.
BS17554.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:36 Download gff for
BS17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-PA | 93..951 | 17..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:56:16 Download gff for
BS17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 232..1091 | 16..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:22:00 Download gff for
BS17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 232..1091 | 16..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:22:00 Download gff for
BS17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4427261..4428125 | 13..876 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:56:16 Download gff for
BS17554.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 252983..253847 | 13..876 | 99 | -> | Minus |
BS17554.5prime Sequence
802 bp (798 high quality bases) assembled on 2007-05-15
> BS17554.5prime
GAAGTTATCAGTCGACATGCCAAAAAAAGTGATCACAAGGCGTCAACGCA
AAGCTGCAGAGTCCCGGCTAAGGGCCACAAAGGAAGCAAGTCAGAAGAAT
TGGCCCAGGATAATAGAAGTTATACCGATTCCCCCAATCTCTCGTTCGAC
TAATTCAACTAGCTCAAAGGAAACATACTCAAAGAAAAAAGATATAGGTA
TGTCCCAGACGACTTTAGATGGAAAGAATGAGAAGGAAAAAACTCCGTCT
TTGGAACAGTCAATCCACGAATCCGAAAAGAAAATTCAGCTGTGTGATGC
TCTGCAAAAAATTCGATTAACTAGTCACAAGAAAACCTTCTTGTCGGAAA
TAAAAAAGAAGGCTTTTGACGCGGAACAATTCCAAAATACCACTTCATCC
GGATATGATAAGGACAATAAATTTATTGCACTGGTTCCAAGGAACACCAA
TAAAGGGGCCAATAAAACTCCAAACTCCAGCGTGCCATTGATGTCCAAAT
TTTGCGAACAAATTAAGTCGCACTTCCACTCTGTCCTGCCGACACGAAAC
CTACTCTGTTCAAAATCCCCAATTCCGATGGAAAAGGAACCTGATCACGG
TGCAGATTTGCTGTTGCCACGACCAGTTTTCAATAACCTGGAGAATGAAG
TTAAAGTCAAATGCTTCAAGCCTTCTGAGCTAGCTAGAAATCCCAAACCG
CCTATTAGGATTTTTGGCATAACAGGCTTCTTTGTCCTAACTGGTACCAA
TGCTCAGTTGTCTTTTCACATCGGCCAACTTGCGATCAGAGGCGTTAGTG
TC
BS17554.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-PA | 951 | CG31525-RA | 1..786 | 17..802 | 3930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-RA | 1171 | CG31525-RA | 136..925 | 13..802 | 3935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:54:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4427165..4427954 | 13..802 | 3935 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:54:26 has no hits.
BS17554.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:25 Download gff for
BS17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:34:36 Download gff for
BS17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 136..925 | 13..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:25:55 Download gff for
BS17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31525-RA | 136..925 | 13..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:55 Download gff for
BS17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4427165..4427954 | 13..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:34:36 Download gff for
BS17554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 252887..253676 | 13..802 | 99 | | Plus |
BS17554.pep Sequence
Translation from 16 to 966
> BS17554.pep
MPKKVITRRQRKAAESRLRATKEASQKNWPRIIEVIPIPPISRSTNSTSS
KETYSKKKDIGMSQTTLDGKNEKEKTPSLEQSIHESEKKIQLCDALQKIR
LTSHKKTFLSEIKKKAFDAEQFQNTTSSGYDKDNKFIALVPRNTNKGANK
TPNSSVPLMSKFCEQIKSHFHSVLPTRNLLCSKSPIPMEKEPDHGADLLL
PRPVFNNLENEVKVKCFKPSELARNPKPPIRIFGITGFFVLTGTNAQLSF
HIGQLAIRGVSVQSCIHLQTEMMDKVEEQLAKLTMDRKRILNKMHNKHAT
LAQRRAPPETHHQGKN*
BS17554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31525-PA | 316 | CG31525-PA | 1..316 | 1..316 | 1634 | 100 | Plus |
