Clone Sequence Records
BS17555.complete Sequence
1073 bp assembled on 2010-02-09
GenBank Submission: KX803141
> BS17555.complete
GAAGTTATCAGTCGACATGAAGCAGTTTGTGGTTTTGGCCGTTCTGGCTG
TGATTGGCGGTTCCCTGGCCGCTCCTCGTCCGGATGTCAGCCATCTGGCG
GGATACAGCTACCAGGCTGGTGGTTACAATGGCAACCTGGTGGCCAATCA
GGTGCTCAGTGCTCCCTTGACCACGGTGACCACCTCGTACCAGCCCACGG
CAGCTGGTACCAACTACTACAGTTCGGCACCATCCATTGGTCAGCTTAAT
CTGGGCTCCTCCGGTTCTTCTGGTGTGGTCAACTACCAGGTGGGCGGCTC
TGGCTCGTCCAGCTATCAAGTGGGCTCCTCCTCTGTCGGCGGTGGCATCG
TGAACGATAACATTGGCCTGGCCGGTCTGCAGCCCGGACCCACCATCAAC
TACAACGAGCAGGAGTCGTACATCAGCCATCTGGCCAACTTCCAGCCCGC
CCAGATCAACAAGCACTTCTACATCCACAGTGCTCCCGAGGATCACGATG
AGCAGCAGATCGTGCGCTATGTGAATGTGGGCAGGCCCCAGAAGAACTAC
CGTGTGGTCTTCATCAACGCTCCCACATCCACCGCCAGCAAGGCCAAGAT
CATTGCCAACGTGGCGCCCGTTGAGGAGAAGACTGCCATCTATGTCCTGT
CCAAGAAGTCTAATGCCCTGGATGTCACCGCCGAGGTGGTCACTCAGCGC
CCTGTGGCCAACAAGCCGGAGGTGTTCTTCGTCAAGTATAAGACTCCTCA
GGAGGCGGCCCATGCCCAGCAGACCATTCAGGCCAACTATGATGCTCTGG
GTGGAAGCTCTGAGACCAGCAACGAGGGTGTGATTCCCGTTTCCTCCGTG
ATCGGTAGCCTGGGCGATAATGGAGCCTCCGGAGTGTTGACCGATGCCAG
CGGTAGCGTGAACATTGTGGGCACCGGCGGAGTTCCAACCGTGGATGCTG
GAGCCAGCTATGATGCCGAGGGCAGCCAGCGCCAGGTGATCAGCACCGTG
ACTACCGGCACCAATGCCCAGGCTACCTATCTGCCCGTGAAGCCGGTGAG
GAAGTAGAAGCTTTCTAGACCAT
BS17555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlX-RA | 1041 | CG32571-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlX-RA | 1366 | CG32571-RA | 78..1120 | 15..1057 | 5215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16731252..16732003 | 31..782 | 3760 | 100 | Plus |
X | 23542271 | X | 16732109..16732384 | 782..1057 | 1380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:09:28 has no hits.
BS17555.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:58 Download gff for
BS17555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:47 Download gff for
BS17555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:50 Download gff for
BS17555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 80..1120 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:58 Download gff for
BS17555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:07 Download gff for
BS17555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 80..1120 | 17..1057 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:07 Download gff for
BS17555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16731253..16732003 | 32..782 | 100 | -> | Plus |
X | 16732110..16732384 | 783..1057 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:50 Download gff for
BS17555.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16625286..16626036 | 32..782 | 100 | -> | Plus |
arm_X | 16626143..16626417 | 783..1057 | 100 | | Plus |
BS17555.3prime Sequence
811 bp (738 high quality bases) assembled on 2007-05-15
> BS17555.3prime
ATGGTCTAGAAAGCTTCTACTTCCTCACCGGCTTCACGGGCAGATAGGTA
GCCTGGGCATTGGTGCCGGTAGTCACGGTGCTGATCACCTGGCGCTGGCT
GCCCTCGGCATCATAGCTGGCTCCAGCATCCACGGTTGGAACTCCGCCGG
TGCCCACAATGTTCACGCTACCGCTGGCATCGGTCAACACTCCGGAGGCT
CCATTATCGCCCAGGCTACCGATCACGGAGGAAACGGGAATCACACCCTC
GTTGCTGGTCTCAGAGCTTCCACCCAGAGCATCATAGTTGGCCTGAATGG
TCTGCTGGGCATGGGCCGCCTCCTGAGGAGTCTTATACTTGACGAAGAAC
ACCTCCGGCTTGTTGGCCACAGGGCGCTGAGTGACCACCTCGGCGGTGAC
ATCCAGGGCATTAGACTTCTTGGACAGGACATAGATGGCAGTCTTCTCCT
CAACGGGCGCCACGTTGGCAATGATCTTGGCCTTGCTGGCGGTGGATGTG
GGAGCGTTGATGAAGACCACACGGTAGTTCTTCTGGGGCCTGCCCACATT
CACATAGCGCACGATCTGCTGCTCATCGTGATCCTCGGGAGCACTGTGGA
TGTAGAAGTGCTTGTTGATCTGGGCGGGCTGGAAGTTGGCCAGATGGCTG
ATGTACGACTCCTGCTCGTTGTAGTTGATGGTGGGTCCGGGCTGCAGACC
GGCCAGGCCAATGTTATCGTTCACGATGCCACCGCCGACAGAGGAGGAGC
CCACTTGATAGCTGGACGAGCCAGAGCCGCCCACCTGGTAGTTGACCACA
CCAGAAGAACC
BS17555.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32571-PA | 1041 | CG32571-RA | 247..1041 | 811..17 | 3975 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlX-RA | 1366 | CG32571-RA | 326..1120 | 811..17 | 3975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16731484..16732003 | 811..292 | 2600 | 100 | Minus |
X | 23542271 | X | 16732109..16732384 | 292..17 | 1380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:47:30 has no hits.
BS17555.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:06 Download gff for
BS17555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32571-PA | 247..1041 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:51 Download gff for
BS17555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 326..1120 | 17..811 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:56 Download gff for
BS17555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 326..1120 | 17..811 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:56 Download gff for
BS17555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16731484..16732003 | 292..811 | 100 | -> | Minus |
X | 16732110..16732384 | 17..291 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:51 Download gff for
BS17555.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16625517..16626036 | 292..811 | 100 | -> | Minus |
arm_X | 16626143..16626417 | 17..291 | 100 | | Minus |
BS17555.5prime Sequence
860 bp (706 high quality bases) assembled on 2007-05-15
> BS17555.5prime
GAAGTTATCAGTCGACATGAAGCAGTTTGTGGTTTTGGCCGTTCTGGCTG
TGATTGGCGGTTCCCTGGCCGCTCCTCGTCCGGATGTCAGCCATCTGGCG
GGATACAGCTACCAGGCTGGTGGTTACAATGGCAACCTGGTGGCCAATCA
GGTGCTCAGTGCTCCCTTGACCACGGTGACCACCTCGTACCAGCCCACGG
CAGCTGGTACCAACTACTACAGTTCGGCACCATCCATTGGTCAGCTTAAT
CTGGGCTCCTCCGGTTCTTCTGGTGTGGTCAACTACCAGGTGGGCGGCTC
TGGCTCGTCCAGCTATCAAGTGGGCTCCTCCTCTGTCGGCGGTGGCATCG
TGAACGATAACATTGGCCTGGCCGGTCTGCAGCCCGGACCCACCATCAAC
TACAACGAGCAGGAGTCGTACATCAGCCATCTGGCCAACTTCCAGCCCGC
CCAGATCAACAAGCACTTCTACATCCACAGTGCTCCCGAGGATCACGATG
AGCAGCAGATCGTGCGCTATGTGAATGTGGGCAGGCCCCAGAAGAACTAC
CGTGTGGTCTTCATCAACGCTCCCACATCCACCGCCAGCAAGGCCAAGAT
CATTGCCAACGTGGCGCCCGTTGAGGAGAAGACTGCCATCTATGTCCTGT
CCAAGAAGTCTAATGCCCTGGATGTCACCGCCGAGGTGGTCACTCAGCGC
CCTGTGGCCAACAAGCCGGAGGTGTTCTTCGTCAAGTATAAGACTCCTCA
GGAGGCGGCCCATGCCCAGCAGACCATTCANGCCAACTATGATGCTCTGG
GTGGAAGCTCTGAGACCAGCAACGAGGGTGTGATTCCCGTTTCCTCCGTG
ATCGGTAGCC
BS17555.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32571-PA | 1041 | CG32571-RA | 1..844 | 17..860 | 4201 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlX-RA | 1366 | CG32571-RA | 78..923 | 15..860 | 4219 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16731252..16732001 | 31..780 | 3750 | 100 | Plus |
X | 23542271 | X | 16732109..16732187 | 782..860 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:55:22 has no hits.
BS17555.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:07 Download gff for
BS17555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32571-PA | 1..844 | 17..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:28 Download gff for
BS17555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 67..923 | 6..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:12 Download gff for
BS17555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TwdlX-RA | 67..923 | 6..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:12 Download gff for
BS17555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16731253..16732003 | 32..782 | 99 | -> | Plus |
X | 16732110..16732187 | 783..860 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:28 Download gff for
BS17555.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16625286..16626036 | 32..782 | 99 | -> | Plus |
arm_X | 16626143..16626220 | 783..860 | 100 | | Plus |
BS17555.pep Sequence
Translation from 16 to 1056
> BS17555.pep
MKQFVVLAVLAVIGGSLAAPRPDVSHLAGYSYQAGGYNGNLVANQVLSAP
LTTVTTSYQPTAAGTNYYSSAPSIGQLNLGSSGSSGVVNYQVGGSGSSSY
QVGSSSVGGGIVNDNIGLAGLQPGPTINYNEQESYISHLANFQPAQINKH
FYIHSAPEDHDEQQIVRYVNVGRPQKNYRVVFINAPTSTASKAKIIANVA
PVEEKTAIYVLSKKSNALDVTAEVVTQRPVANKPEVFFVKYKTPQEAAHA
QQTIQANYDALGGSSETSNEGVIPVSSVIGSLGDNGASGVLTDASGSVNI
VGTGGVPTVDAGASYDAEGSQRQVISTVTTGTNAQATYLPVKPVRK*
BS17555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TwdlX-PA | 346 | CG32571-PA | 1..346 | 1..346 | 1747 | 100 | Plus |
Twdlalpha-PA | 388 | CG32574-PA | 42..352 | 14..330 | 447 | 39.2 | Plus |
TwdlV-PA | 251 | CG14640-PA | 21..248 | 89..340 | 406 | 40.9 | Plus |
TwdlY-PA | 247 | CG32570-PA | 35..213 | 96..282 | 378 | 45.7 | Plus |
TwdlG-PC | 278 | CG14643-PC | 69..258 | 93..290 | 352 | 43.5 | Plus |