Clone BS17555 Report

Search the DGRC for BS17555

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptTwdlX-RA
Protein status:BS17555.pep: full length peptide match
Sequenced Size:1073

Clone Sequence Records

BS17555.complete Sequence

1073 bp assembled on 2010-02-09

GenBank Submission: KX803141

> BS17555.complete
GAAGTTATCAGTCGACATGAAGCAGTTTGTGGTTTTGGCCGTTCTGGCTG
TGATTGGCGGTTCCCTGGCCGCTCCTCGTCCGGATGTCAGCCATCTGGCG
GGATACAGCTACCAGGCTGGTGGTTACAATGGCAACCTGGTGGCCAATCA
GGTGCTCAGTGCTCCCTTGACCACGGTGACCACCTCGTACCAGCCCACGG
CAGCTGGTACCAACTACTACAGTTCGGCACCATCCATTGGTCAGCTTAAT
CTGGGCTCCTCCGGTTCTTCTGGTGTGGTCAACTACCAGGTGGGCGGCTC
TGGCTCGTCCAGCTATCAAGTGGGCTCCTCCTCTGTCGGCGGTGGCATCG
TGAACGATAACATTGGCCTGGCCGGTCTGCAGCCCGGACCCACCATCAAC
TACAACGAGCAGGAGTCGTACATCAGCCATCTGGCCAACTTCCAGCCCGC
CCAGATCAACAAGCACTTCTACATCCACAGTGCTCCCGAGGATCACGATG
AGCAGCAGATCGTGCGCTATGTGAATGTGGGCAGGCCCCAGAAGAACTAC
CGTGTGGTCTTCATCAACGCTCCCACATCCACCGCCAGCAAGGCCAAGAT
CATTGCCAACGTGGCGCCCGTTGAGGAGAAGACTGCCATCTATGTCCTGT
CCAAGAAGTCTAATGCCCTGGATGTCACCGCCGAGGTGGTCACTCAGCGC
CCTGTGGCCAACAAGCCGGAGGTGTTCTTCGTCAAGTATAAGACTCCTCA
GGAGGCGGCCCATGCCCAGCAGACCATTCAGGCCAACTATGATGCTCTGG
GTGGAAGCTCTGAGACCAGCAACGAGGGTGTGATTCCCGTTTCCTCCGTG
ATCGGTAGCCTGGGCGATAATGGAGCCTCCGGAGTGTTGACCGATGCCAG
CGGTAGCGTGAACATTGTGGGCACCGGCGGAGTTCCAACCGTGGATGCTG
GAGCCAGCTATGATGCCGAGGGCAGCCAGCGCCAGGTGATCAGCACCGTG
ACTACCGGCACCAATGCCCAGGCTACCTATCTGCCCGTGAAGCCGGTGAG
GAAGTAGAAGCTTTCTAGACCAT

BS17555.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlX-RA 1041 CG32571-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:09:30
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlX-RA 1366 CG32571-RA 78..1120 15..1057 5215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:09:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16731252..16732003 31..782 3760 100 Plus
X 23542271 X 16732109..16732384 782..1057 1380 100 Plus
Blast to na_te.dros performed on 2014-11-28 03:09:28 has no hits.

BS17555.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:58 Download gff for BS17555.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 1..1041 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:47 Download gff for BS17555.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 1..1041 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:50 Download gff for BS17555.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 80..1120 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:58 Download gff for BS17555.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 1..1041 17..1057 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:44:07 Download gff for BS17555.complete
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 80..1120 17..1057 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:44:07 Download gff for BS17555.complete
Subject Subject Range Query Range Percent Splice Strand
X 16731253..16732003 32..782 100 -> Plus
X 16732110..16732384 783..1057 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:50 Download gff for BS17555.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16625286..16626036 32..782 100 -> Plus
arm_X 16626143..16626417 783..1057 100   Plus

BS17555.3prime Sequence

811 bp (738 high quality bases) assembled on 2007-05-15

> BS17555.3prime
ATGGTCTAGAAAGCTTCTACTTCCTCACCGGCTTCACGGGCAGATAGGTA
GCCTGGGCATTGGTGCCGGTAGTCACGGTGCTGATCACCTGGCGCTGGCT
GCCCTCGGCATCATAGCTGGCTCCAGCATCCACGGTTGGAACTCCGCCGG
TGCCCACAATGTTCACGCTACCGCTGGCATCGGTCAACACTCCGGAGGCT
CCATTATCGCCCAGGCTACCGATCACGGAGGAAACGGGAATCACACCCTC
GTTGCTGGTCTCAGAGCTTCCACCCAGAGCATCATAGTTGGCCTGAATGG
TCTGCTGGGCATGGGCCGCCTCCTGAGGAGTCTTATACTTGACGAAGAAC
ACCTCCGGCTTGTTGGCCACAGGGCGCTGAGTGACCACCTCGGCGGTGAC
ATCCAGGGCATTAGACTTCTTGGACAGGACATAGATGGCAGTCTTCTCCT
CAACGGGCGCCACGTTGGCAATGATCTTGGCCTTGCTGGCGGTGGATGTG
GGAGCGTTGATGAAGACCACACGGTAGTTCTTCTGGGGCCTGCCCACATT
CACATAGCGCACGATCTGCTGCTCATCGTGATCCTCGGGAGCACTGTGGA
TGTAGAAGTGCTTGTTGATCTGGGCGGGCTGGAAGTTGGCCAGATGGCTG
ATGTACGACTCCTGCTCGTTGTAGTTGATGGTGGGTCCGGGCTGCAGACC
GGCCAGGCCAATGTTATCGTTCACGATGCCACCGCCGACAGAGGAGGAGC
CCACTTGATAGCTGGACGAGCCAGAGCCGCCCACCTGGTAGTTGACCACA
CCAGAAGAACC

BS17555.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32571-PA 1041 CG32571-RA 247..1041 811..17 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:47:32
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlX-RA 1366 CG32571-RA 326..1120 811..17 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:47:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16731484..16732003 811..292 2600 100 Minus
X 23542271 X 16732109..16732384 292..17 1380 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:47:30 has no hits.

BS17555.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:06 Download gff for BS17555.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32571-PA 247..1041 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:51 Download gff for BS17555.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 326..1120 17..811 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:56 Download gff for BS17555.3prime
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 326..1120 17..811 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:56 Download gff for BS17555.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16731484..16732003 292..811 100 -> Minus
X 16732110..16732384 17..291 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:51 Download gff for BS17555.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16625517..16626036 292..811 100 -> Minus
arm_X 16626143..16626417 17..291 100   Minus

BS17555.5prime Sequence

860 bp (706 high quality bases) assembled on 2007-05-15

> BS17555.5prime
GAAGTTATCAGTCGACATGAAGCAGTTTGTGGTTTTGGCCGTTCTGGCTG
TGATTGGCGGTTCCCTGGCCGCTCCTCGTCCGGATGTCAGCCATCTGGCG
GGATACAGCTACCAGGCTGGTGGTTACAATGGCAACCTGGTGGCCAATCA
GGTGCTCAGTGCTCCCTTGACCACGGTGACCACCTCGTACCAGCCCACGG
CAGCTGGTACCAACTACTACAGTTCGGCACCATCCATTGGTCAGCTTAAT
CTGGGCTCCTCCGGTTCTTCTGGTGTGGTCAACTACCAGGTGGGCGGCTC
TGGCTCGTCCAGCTATCAAGTGGGCTCCTCCTCTGTCGGCGGTGGCATCG
TGAACGATAACATTGGCCTGGCCGGTCTGCAGCCCGGACCCACCATCAAC
TACAACGAGCAGGAGTCGTACATCAGCCATCTGGCCAACTTCCAGCCCGC
CCAGATCAACAAGCACTTCTACATCCACAGTGCTCCCGAGGATCACGATG
AGCAGCAGATCGTGCGCTATGTGAATGTGGGCAGGCCCCAGAAGAACTAC
CGTGTGGTCTTCATCAACGCTCCCACATCCACCGCCAGCAAGGCCAAGAT
CATTGCCAACGTGGCGCCCGTTGAGGAGAAGACTGCCATCTATGTCCTGT
CCAAGAAGTCTAATGCCCTGGATGTCACCGCCGAGGTGGTCACTCAGCGC
CCTGTGGCCAACAAGCCGGAGGTGTTCTTCGTCAAGTATAAGACTCCTCA
GGAGGCGGCCCATGCCCAGCAGACCATTCANGCCAACTATGATGCTCTGG
GTGGAAGCTCTGAGACCAGCAACGAGGGTGTGATTCCCGTTTCCTCCGTG
ATCGGTAGCC

BS17555.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG32571-PA 1041 CG32571-RA 1..844 17..860 4201 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlX-RA 1366 CG32571-RA 78..923 15..860 4219 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16731252..16732001 31..780 3750 100 Plus
X 23542271 X 16732109..16732187 782..860 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:55:22 has no hits.

BS17555.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:07 Download gff for BS17555.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32571-PA 1..844 17..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:28 Download gff for BS17555.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 67..923 6..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:12 Download gff for BS17555.5prime
Subject Subject Range Query Range Percent Splice Strand
TwdlX-RA 67..923 6..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:12 Download gff for BS17555.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16731253..16732003 32..782 99 -> Plus
X 16732110..16732187 783..860 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:28 Download gff for BS17555.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16625286..16626036 32..782 99 -> Plus
arm_X 16626143..16626220 783..860 100   Plus

BS17555.pep Sequence

Translation from 16 to 1056

> BS17555.pep
MKQFVVLAVLAVIGGSLAAPRPDVSHLAGYSYQAGGYNGNLVANQVLSAP
LTTVTTSYQPTAAGTNYYSSAPSIGQLNLGSSGSSGVVNYQVGGSGSSSY
QVGSSSVGGGIVNDNIGLAGLQPGPTINYNEQESYISHLANFQPAQINKH
FYIHSAPEDHDEQQIVRYVNVGRPQKNYRVVFINAPTSTASKAKIIANVA
PVEEKTAIYVLSKKSNALDVTAEVVTQRPVANKPEVFFVKYKTPQEAAHA
QQTIQANYDALGGSSETSNEGVIPVSSVIGSLGDNGASGVLTDASGSVNI
VGTGGVPTVDAGASYDAEGSQRQVISTVTTGTNAQATYLPVKPVRK*

BS17555.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:54
Subject Length Description Subject Range Query Range Score Percent Strand
TwdlX-PA 346 CG32571-PA 1..346 1..346 1747 100 Plus
Twdlalpha-PA 388 CG32574-PA 42..352 14..330 447 39.2 Plus
TwdlV-PA 251 CG14640-PA 21..248 89..340 406 40.9 Plus
TwdlY-PA 247 CG32570-PA 35..213 96..282 378 45.7 Plus
TwdlG-PC 278 CG14643-PC 69..258 93..290 352 43.5 Plus