Clone Sequence Records
BS17556.complete Sequence
1169 bp assembled on 2009-12-07
GenBank Submission: KX803741
> BS17556.complete
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGG
CGATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCC
CAAAGGATAACGTTCAGGAACTGGTCTGTGCGTTACCATGTAATGGGCAT
GAACACGGTTGCTGTTCCAACGCACTTCTTCAAAATCATCATAAGAGAGG
ATGAGTTTAATAGGGATATGCCCATTATGGAAGGTTATGTTGTTCCCAAT
GCATATGTCGACAAGGATATGGATCTGCGCTCATTTTTAGCCGATGTTCG
TGATATTGAACACTTCGCAGGACTCAAATTCTGTGATGGCCAGCAGCGGG
ATCAACTTGAATTGCCTGTAAAACCGCCCTCAATGACGGATTTCCAGAAC
TGAAAGCTTTCTAGACCAT
BS17556.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1137 | CG4683-PA | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1408 | CG4683-RA | 149..1285 | 17..1153 | 5685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10950874..10951674 | 353..1153 | 4005 | 100 | Plus |
3R | 32079331 | 3R | 10950643..10950819 | 176..352 | 885 | 100 | Plus |
3R | 32079331 | 3R | 10950432..10950590 | 17..175 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:43:48 has no hits.
BS17556.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:59 Download gff for
BS17556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-RA | 1..1137 | 17..1153 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:04 Download gff for
BS17556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-RA | 119..1249 | 22..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:06 Download gff for
BS17556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 154..1284 | 22..1152 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:59 Download gff for
BS17556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-RA | 96..1250 | 2..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:30 Download gff for
BS17556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 154..1284 | 22..1152 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:30 Download gff for
BS17556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10950437..10950590 | 22..175 | 100 | -> | Plus |
3R | 10950643..10950819 | 176..352 | 100 | -> | Plus |
3R | 10950874..10951673 | 353..1152 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:06 Download gff for
BS17556.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6776159..6776312 | 22..175 | 100 | -> | Plus |
arm_3R | 6776365..6776541 | 176..352 | 100 | -> | Plus |
arm_3R | 6776596..6777395 | 353..1152 | 100 | | Plus |
BS17556.3prime Sequence
886 bp (835 high quality bases) assembled on 2007-05-15
> BS17556.3prime
ATGGTCTAGAAAGCTTTCAGTTCTGGAAATCCGTCATTGAGGGCGGTTTT
ACAGGCAATTCAAGTTGATCCCGCTGCTGGCCATCACAGAATTTGAGTCC
TGCGAAGTGTTCAATATCACGAACATCGGCTAAAAATGAGCGCAGATCCA
TATCCTTGTCGACATATGCATTGGGAACAACATAACCTTCCATAATGGGC
ATATCCCTATTAAACTCATCCTCTCTTATGATGATTTTGAAGAAGTGCGT
TGGAACAGCAACCGTGTTCATGCCCATTACATGGTAACGCACAGACCAGT
TCCTGAACGTTATCCTTTGGGGCATAAACAGAGGACCGGTATAAACATGA
ACTGAATCGAATTCGATCGCCTTGTCTCTAACATAGCTTTCCAAACGGTA
CCAAATATGGTTTTTCAGCCCTCGATTAATGGGCACGATATTCGTAAACT
TGTAGGCCTCCAAAAACTTCAGCGCATCGCATTTGTAGTTTTGAGGGGAG
GCCAAGTGACCACCAACCCAATCGGAATTCTTAAAGTCCCGCATATTTGC
ACTAAATATCGTTGGTATTGTATTGTCTGTTATGTAGGCATTTGGCTTAT
TCAATGTCTTTTCATCCCTCTCCTGTACGCATCCGCTTTTGACATGTTCA
CATACCCAATGGGCAATACGATTGCGACGATCGTATGAGAGTACGAAGTT
TTTATAGACGTGTATTTCATCCATGCCCGGAAATCCATACTTCATAATAT
CAGCTACATGTTCAATATTCTCATGTCTGCTTCCATTTGGCCCGACAGAT
AATGTCATCTTCGATATTGCGTTATGCGCCTTCCTGCGACCCCACAGTAA
AAAGTGTTCGAATATGGATACACTACCAGGATCTTG
BS17556.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4683-PA | 1137 | CG4683-RA | 268..1137 | 886..17 | 4350 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1408 | CG4683-RA | 416..1285 | 886..17 | 4350 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10950874..10951674 | 817..17 | 4005 | 100 | Minus |
3R | 32079331 | 3R | 10950751..10950819 | 886..818 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:05:56 has no hits.
BS17556.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:16 Download gff for
BS17556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-PA | 268..1137 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:08 Download gff for
BS17556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 416..1287 | 12..886 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:19 Download gff for
BS17556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 416..1287 | 12..886 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:19 Download gff for
BS17556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10950751..10950819 | 818..886 | 100 | -> | Minus |
3R | 10950874..10951676 | 12..817 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:08 Download gff for
BS17556.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6776473..6776541 | 818..886 | 100 | -> | Minus |
arm_3R | 6776596..6777398 | 12..817 | 99 | | Minus |
BS17556.5prime Sequence
915 bp (789 high quality bases) assembled on 2007-05-15
> BS17556.5prime
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGG
CGATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCC
CAAAGGATAACGTTCAGGAACTGGTCTGTGCGTTACCATGTAATGGGCAT
GAACACGGGTGCTGT
BS17556.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4683-PA | 1137 | CG4683-RA | 1..899 | 17..915 | 4470 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-RA | 1408 | CG4683-RA | 149..1047 | 17..915 | 4480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:38:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10950874..10951436 | 353..915 | 2800 | 99.8 | Plus |
3R | 32079331 | 3R | 10950643..10950819 | 176..352 | 885 | 100 | Plus |
3R | 32079331 | 3R | 10950432..10950590 | 17..175 | 795 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 23:38:36 has no hits.
BS17556.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:17 Download gff for
BS17556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4683-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:02 Download gff for
BS17556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 131..1047 | 2..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:33 Download gff for
BS17556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tengl4-RA | 131..1047 | 2..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:33 Download gff for
BS17556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10950643..10950819 | 176..352 | 100 | -> | Plus |
3R | 10950414..10950590 | 2..175 | 97 | -> | Plus |
3R | 10950874..10951436 | 353..915 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:02 Download gff for
BS17556.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6776136..6776312 | 2..175 | 97 | -> | Plus |
arm_3R | 6776365..6776541 | 176..352 | 100 | -> | Plus |
arm_3R | 6776596..6777158 | 353..915 | 99 | | Plus |
BS17556.pep Sequence
Translation from 16 to 1152
> BS17556.pep
MLTYVAIALCAVTGASCFILGALVQQHLSFRQIKSVMLTDPYVYQCRQPI
YRALSMFGHSSRKSITRTESNQTASIGDESGTSKRYSERQDPGSVSIFEH
FLLWGRRKAHNAISKMTLSVGPNGSRHENIEHVADIMKYGFPGMDEIHVY
KNFVLSYDRRNRIAHWVCEHVKSGCVQERDEKTLNKPNAYITDNTIPTIF
SANMRDFKNSDWVGGHLASPQNYKCDALKFLEAYKFTNIVPINRGLKNHI
WYRLESYVRDKAIEFDSVHVYTGPLFMPQRITFRNWSVRYHVMGMNTVAV
PTHFFKIIIREDEFNRDMPIMEGYVVPNAYVDKDMDLRSFLADVRDIEHF
AGLKFCDGQQRDQLELPVKPPSMTDFQN*
BS17556.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tengl4-PA | 378 | CG4683-PA | 1..378 | 1..378 | 2022 | 100 | Plus |
Tengl2-PA | 318 | CG32463-PA | 64..302 | 125..364 | 545 | 43.2 | Plus |
EndoG-PA | 310 | CG8862-PA | 73..302 | 133..364 | 398 | 36.1 | Plus |
Tengl3-PA | 337 | CG31679-PA | 12..292 | 8..355 | 316 | 26.4 | Plus |
Tengl1-PA | 319 | CG31682-PA | 72..276 | 128..362 | 303 | 29.7 | Plus |