Clone BS17556 Report

Search the DGRC for BS17556

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptTengl4-RA
Protein status:BS17556.pep: full length peptide match
Sequenced Size:1169

Clone Sequence Records

BS17556.complete Sequence

1169 bp assembled on 2009-12-07

GenBank Submission: KX803741

> BS17556.complete
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGG
CGATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCC
CAAAGGATAACGTTCAGGAACTGGTCTGTGCGTTACCATGTAATGGGCAT
GAACACGGTTGCTGTTCCAACGCACTTCTTCAAAATCATCATAAGAGAGG
ATGAGTTTAATAGGGATATGCCCATTATGGAAGGTTATGTTGTTCCCAAT
GCATATGTCGACAAGGATATGGATCTGCGCTCATTTTTAGCCGATGTTCG
TGATATTGAACACTTCGCAGGACTCAAATTCTGTGATGGCCAGCAGCGGG
ATCAACTTGAATTGCCTGTAAAACCGCCCTCAATGACGGATTTCCAGAAC
TGAAAGCTTTCTAGACCAT

BS17556.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1137 CG4683-PA 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:43:50
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1408 CG4683-RA 149..1285 17..1153 5685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10950874..10951674 353..1153 4005 100 Plus
3R 32079331 3R 10950643..10950819 176..352 885 100 Plus
3R 32079331 3R 10950432..10950590 17..175 795 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:43:48 has no hits.

BS17556.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:59 Download gff for BS17556.complete
Subject Subject Range Query Range Percent Splice Strand
CG4683-RA 1..1137 17..1153 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:04 Download gff for BS17556.complete
Subject Subject Range Query Range Percent Splice Strand
CG4683-RA 119..1249 22..1152 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:06 Download gff for BS17556.complete
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 154..1284 22..1152 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:59 Download gff for BS17556.complete
Subject Subject Range Query Range Percent Splice Strand
CG4683-RA 96..1250 2..1153 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:30 Download gff for BS17556.complete
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 154..1284 22..1152 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:30 Download gff for BS17556.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10950437..10950590 22..175 100 -> Plus
3R 10950643..10950819 176..352 100 -> Plus
3R 10950874..10951673 353..1152 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:06 Download gff for BS17556.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6776159..6776312 22..175 100 -> Plus
arm_3R 6776365..6776541 176..352 100 -> Plus
arm_3R 6776596..6777395 353..1152 100   Plus

BS17556.3prime Sequence

886 bp (835 high quality bases) assembled on 2007-05-15

> BS17556.3prime
ATGGTCTAGAAAGCTTTCAGTTCTGGAAATCCGTCATTGAGGGCGGTTTT
ACAGGCAATTCAAGTTGATCCCGCTGCTGGCCATCACAGAATTTGAGTCC
TGCGAAGTGTTCAATATCACGAACATCGGCTAAAAATGAGCGCAGATCCA
TATCCTTGTCGACATATGCATTGGGAACAACATAACCTTCCATAATGGGC
ATATCCCTATTAAACTCATCCTCTCTTATGATGATTTTGAAGAAGTGCGT
TGGAACAGCAACCGTGTTCATGCCCATTACATGGTAACGCACAGACCAGT
TCCTGAACGTTATCCTTTGGGGCATAAACAGAGGACCGGTATAAACATGA
ACTGAATCGAATTCGATCGCCTTGTCTCTAACATAGCTTTCCAAACGGTA
CCAAATATGGTTTTTCAGCCCTCGATTAATGGGCACGATATTCGTAAACT
TGTAGGCCTCCAAAAACTTCAGCGCATCGCATTTGTAGTTTTGAGGGGAG
GCCAAGTGACCACCAACCCAATCGGAATTCTTAAAGTCCCGCATATTTGC
ACTAAATATCGTTGGTATTGTATTGTCTGTTATGTAGGCATTTGGCTTAT
TCAATGTCTTTTCATCCCTCTCCTGTACGCATCCGCTTTTGACATGTTCA
CATACCCAATGGGCAATACGATTGCGACGATCGTATGAGAGTACGAAGTT
TTTATAGACGTGTATTTCATCCATGCCCGGAAATCCATACTTCATAATAT
CAGCTACATGTTCAATATTCTCATGTCTGCTTCCATTTGGCCCGACAGAT
AATGTCATCTTCGATATTGCGTTATGCGCCTTCCTGCGACCCCACAGTAA
AAAGTGTTCGAATATGGATACACTACCAGGATCTTG

BS17556.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4683-PA 1137 CG4683-RA 268..1137 886..17 4350 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1408 CG4683-RA 416..1285 886..17 4350 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10950874..10951674 817..17 4005 100 Minus
3R 32079331 3R 10950751..10950819 886..818 345 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:05:56 has no hits.

BS17556.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:16 Download gff for BS17556.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4683-PA 268..1137 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:08 Download gff for BS17556.3prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 416..1287 12..886 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:19 Download gff for BS17556.3prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 416..1287 12..886 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:19 Download gff for BS17556.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10950751..10950819 818..886 100 -> Minus
3R 10950874..10951676 12..817 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:08 Download gff for BS17556.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6776473..6776541 818..886 100 -> Minus
arm_3R 6776596..6777398 12..817 99   Minus

BS17556.5prime Sequence

915 bp (789 high quality bases) assembled on 2007-05-15

> BS17556.5prime
GAAGTTATCAGTCGACATGTTAACTTATGTAGCCATAGCATTGTGTGCAG
TAACGGGAGCATCCTGTTTTATCCTCGGAGCTCTGGTACAACAACATCTT
TCATTTAGACAAATTAAATCTGTCATGCTTACTGATCCGTATGTCTATCA
ATGCCGTCAACCAATTTATAGGGCATTGTCAATGTTTGGGCATTCGTCTA
GGAAGTCAATTACAAGGACAGAATCTAATCAGACAGCAAGTATTGGAGAC
GAGTCTGGGACTAGCAAACGATATTCAGAAAGACAAGATCCTGGTAGTGT
ATCCATATTCGAACACTTTTTACTGTGGGGTCGCAGGAAGGCGCATAACG
CAATATCGAAGATGACATTATCTGTCGGGCCAAATGGAAGCAGACATGAG
AATATTGAACATGTAGCTGATATTATGAAGTATGGATTTCCGGGCATGGA
TGAAATACACGTCTATAAAAACTTCGTACTCTCATACGATCGTCGCAATC
GTATTGCCCATTGGGTATGTGAACATGTCAAAAGCGGATGCGTACAGGAG
AGGGATGAAAAGACATTGAATAAGCCAAATGCCTACATAACAGACAATAC
AATACCAACGATATTTAGTGCAAATATGCGGGACTTTAAGAATTCCGATT
GGGTTGGTGGTCACTTGGCCTCCCCTCAAAACTACAAATGCGATGCGCTG
AAGTTTTTGGAGGCCTACAAGTTTACGAATATCGTGCCCATTAATCGAGG
GCTGAAAAACCATATTTGGTACCGTTTGGAAAGCTATGTTAGAGACAAGG
CGATCGAATTCGATTCAGTTCATGTTTATACCGGTCCTCTGTTTATGCCC
CAAAGGATAACGTTCAGGAACTGGTCTGTGCGTTACCATGTAATGGGCAT
GAACACGGGTGCTGT

BS17556.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4683-PA 1137 CG4683-RA 1..899 17..915 4470 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-RA 1408 CG4683-RA 149..1047 17..915 4480 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10950874..10951436 353..915 2800 99.8 Plus
3R 32079331 3R 10950643..10950819 176..352 885 100 Plus
3R 32079331 3R 10950432..10950590 17..175 795 100 Plus
Blast to na_te.dros performed on 2015-02-12 23:38:36 has no hits.

BS17556.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:17 Download gff for BS17556.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4683-PA 1..899 17..915 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:02 Download gff for BS17556.5prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 131..1047 2..915 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:33 Download gff for BS17556.5prime
Subject Subject Range Query Range Percent Splice Strand
Tengl4-RA 131..1047 2..915 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:33 Download gff for BS17556.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10950643..10950819 176..352 100 -> Plus
3R 10950414..10950590 2..175 97 -> Plus
3R 10950874..10951436 353..915 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:02 Download gff for BS17556.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6776136..6776312 2..175 97 -> Plus
arm_3R 6776365..6776541 176..352 100 -> Plus
arm_3R 6776596..6777158 353..915 99   Plus

BS17556.pep Sequence

Translation from 16 to 1152

> BS17556.pep
MLTYVAIALCAVTGASCFILGALVQQHLSFRQIKSVMLTDPYVYQCRQPI
YRALSMFGHSSRKSITRTESNQTASIGDESGTSKRYSERQDPGSVSIFEH
FLLWGRRKAHNAISKMTLSVGPNGSRHENIEHVADIMKYGFPGMDEIHVY
KNFVLSYDRRNRIAHWVCEHVKSGCVQERDEKTLNKPNAYITDNTIPTIF
SANMRDFKNSDWVGGHLASPQNYKCDALKFLEAYKFTNIVPINRGLKNHI
WYRLESYVRDKAIEFDSVHVYTGPLFMPQRITFRNWSVRYHVMGMNTVAV
PTHFFKIIIREDEFNRDMPIMEGYVVPNAYVDKDMDLRSFLADVRDIEHF
AGLKFCDGQQRDQLELPVKPPSMTDFQN*

BS17556.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:29
Subject Length Description Subject Range Query Range Score Percent Strand
Tengl4-PA 378 CG4683-PA 1..378 1..378 2022 100 Plus
Tengl2-PA 318 CG32463-PA 64..302 125..364 545 43.2 Plus
EndoG-PA 310 CG8862-PA 73..302 133..364 398 36.1 Plus
Tengl3-PA 337 CG31679-PA 12..292 8..355 316 26.4 Plus
Tengl1-PA 319 CG31682-PA 72..276 128..362 303 29.7 Plus