Clone Sequence Records
BS17559.complete Sequence
992 bp assembled on 2010-02-09
GenBank Submission: KX804035
> BS17559.complete
GAAGTTATCAGTCGACATGAACGACTACGAACTGGAAACCATGCTCCGCA
TAAACAGCATCATGGTGATCAGAAAACTAGGATCCGGATCCTTCGGAGAC
ATCTACGAGGCCAAGCACATGGGGTCAGGACTCCACGTAGCCCTCAAGGT
GGAGCGCAAAAATGCCGGCCAATCGCACTTGAGCATCGAGTCCACGGTGT
ACAATCTGCTGAGACATGGTATGGGAATCCCGATGACGTACCAGTTTTTC
TCAAACAGGCGGCACGACGTGCTGGTCATGGAGTTACTGGGCCCCTCGTT
GGAGACGCTATTCACGATGTGTAATCGCCGCTTCTCCATGAAGACTGTAC
TCATGCTGGCTGACCAGATGGTGGACCGTTTGGAGTACCTGCACCTCCAT
CACTACGTGCACCGCGACATTAAGCCGGAAAACTTTCTGATGGGCGTTGG
CCTGACCAGACACCGGCTCCACCTCATCGACTTCGGCCTATCCAAGCGGT
ACTGGGACATGAAGGAGAACAGGCATGTGCCACAAAGGCGCGGCACAAAG
TGGGCCGGCACCGCCCGCTACGCCTCCGTTAACGCCCTTTGTTGTAAAGT
GCAGTCCCGGCGGGACGACTTGGAATCGGTGGGCTACGTCCTCATTTACC
TTTTGCGAGGTAGCCTGCCCTGGCAAGGCCTCTTGCCCAACAGCAAGTTG
CAGAAGGCGGAGATGATCTTGGAAATGAAGCTGTCCACCTTGCCGAATAG
CCTGTGTGCTGGATATCCAAACGAGTTCTACAACTATATTATATACACCC
GGCAACTGGGCTTCGAAGAGGAACCGGATTATCGGATGATTAGGTGCACC
TTCTTGAGTTTGCTGTTTAATCTGAAGTTCACCAATGATCTCATCTACGA
CTGGGACCACGCCGAGAAGAACAGTGGCAAGAGCGGCTCGGAGGAAGATA
GGGTGGTGGTGAAAAAGGTCGTCTAAAAGCTTTCTAGACCAT
BS17559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 960 | CG9962-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 1144 | CG9962-RA | 73..1035 | 14..976 | 4815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2646686..2647648 | 976..14 | 4815 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:37:07 has no hits.
BS17559.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:42 Download gff for
BS17559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:12:31 Download gff for
BS17559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 1..958 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:02:30 Download gff for
BS17559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 76..1033 | 17..974 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:43 Download gff for
BS17559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 1..960 | 17..976 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:33:02 Download gff for
BS17559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 76..1033 | 17..974 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:33:02 Download gff for
BS17559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2646688..2647645 | 17..974 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:02:30 Download gff for
BS17559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2646688..2647645 | 17..974 | 100 | | Minus |
BS17559.3prime Sequence
878 bp (820 high quality bases) assembled on 2007-05-15
> BS17559.3prime
ATGGTCTAGAAAGCTTTTAGACGACCTTTTTCACCACCACCCTATCTTCC
TCCGAGCCGCTCTTGCCACTGTTCTTCTCGGCGTGGTCCCAGTCGTAGAT
GAGATCATTGGTGAACTTCAGATTAAACAGCAAACTCAAGAAGGTGCACC
TAATCATCCGATAATCCGGTTCCTCTTCGAAGCCCAGTTGCCGGGTGTAT
ATAATATAGTTGTAGAACTCGTTTGGATATCCAGCACACAGGCTATTCGG
CAAGGTGGACAGCTTCATTTCCAAGATCATCTCCGCCTTCTGCAACTTGC
TGTTGGGCAAGAGGCCTTGCCAGGGCAGGCTACCTCGCAAAAGGTAAATG
AGGACGTAGCCCACCGATTCCAAGTCGTCCCGCCGGGACTGCACTTTACA
ACAAAGGGCGTTAACGGAGGCGTAGCGGGCGGTGCCGGCCCACTTTGTGC
CGCGCCTTTGTGGCACATGCCTGTTCTCCTTCATGTCCCAGTACCGCTTG
GATAGGCCGAAGTCGATGAGGTGGAGCCGGTGTCTGGTCAGGCCAACGCC
CATCAGAAAGTTTTCCGGCTTAATGTCGCGGTGCACGTAGTGATGGAGGT
GCAGGTACTCCAAACGGTCCACCATCTGGTCAGCCAGCATGAGTACAGTC
TTCATGGAGAAGCGGCGATTACACATCGTGAATAGCGTCTCCAACGAGGG
GCCCAGTAACTCCATGACCAGCACGTCGTGCCGCCTGTTTGAGAAAAACT
GGTACGTCATCGGGATTCCCATACCATGTCTCAGCAGATTGTACACCGTG
GACTCGATGCTCAAGTGCGATTGGCCGGCATTTTTGCGCTCCACCTTGAG
GGCTACGTGGAGTCCTGACCCCATGTGC
BS17559.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-PA | 960 | CG9962-RA | 99..960 | 878..17 | 4310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 1144 | CG9962-RA | 174..1035 | 878..17 | 4310 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2646686..2647547 | 17..878 | 4310 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:14:07 has no hits.
BS17559.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:31 Download gff for
BS17559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-PA | 99..960 | 17..878 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:58 Download gff for
BS17559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 174..1039 | 13..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:54 Download gff for
BS17559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 174..1039 | 13..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:54 Download gff for
BS17559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2646682..2647547 | 13..878 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:58 Download gff for
BS17559.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2646682..2647547 | 13..878 | 99 | | Plus |
BS17559.5prime Sequence
864 bp (813 high quality bases) assembled on 2007-05-15
> BS17559.5prime
GAAGTTATCAGTCGACATGAACGACTACGAACTGGAAACCATGCTCCGCA
TAAACAGCATCATGGTGATCAGAAAACTAGGATCCGGATCCTTCGGAGAC
ATCTACGAGGCCAAGCACATGGGGTCAGGACTCCACGTAGCCCTCAAGGT
GGAGCGCAAAAATGCCGGCCAATCGCACTTGAGCATCGAGTCCACGGTGT
ACAATCTGCTGAGACATGGTATGGGAATCCCGATGACGTACCAGTTTTTC
TCAAACAGGCGGCACGACGTGCTGGTCATGGAGTTACTGGGCCCCTCGTT
GGAGACGCTATTCACGATGTGTAATCGCCGCTTCTCCATGAAGACTGTAC
TCATGCTGGCTGACCAGATGGTGGACCGTTTGGAGTACCTGCACCTCCAT
CACTACGTGCACCGCGACATTAAGCCGGAAAACTTTCTGATGGGCGTTGG
CCTGACCAGACACCGGCTCCACCTCATCGACTTCGGCCTATCCAAGCGGT
ACTGGGACATGAAGGAGAACAGGCATGTGCCACAAAGGCGCGGCACAAAG
TGGGCCGGCACCGCCCGCTACGCCTCCGTTAACGCCCTTTGTTGTAAAGT
GCAGTCCCGGCGGGACGACTTGGAATCGGTGGGCTACGTCCTCATTTACC
TTTTGCGAGGTAGCCTGCCCTGGCAAGGCCTCTTGCCCAACAGCAAGTTG
CAGAAGGCGGAGATGATCTTGGAAATGAAGCTGTCCACCTTGCCGAATAG
CCTGTGTGCTGGATATCCAAACGAGTTCTACAACTATATTATATACACCC
GGCAACTGGGCTTCGAAGAGGAACCGGATTATCGGATGATTANGTGCACC
TTCTTGAGTTTGCT
BS17559.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-PA | 960 | CG9962-RA | 1..848 | 17..864 | 4221 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-RA | 1144 | CG9962-RA | 73..923 | 14..864 | 4244 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2646798..2647648 | 864..14 | 4244 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:16 has no hits.
BS17559.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:19 Download gff for
BS17559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-PA | 1..848 | 17..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:35 Download gff for
BS17559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 73..923 | 14..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:12 Download gff for
BS17559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9962-RA | 73..923 | 14..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:12 Download gff for
BS17559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2646798..2647648 | 14..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:35 Download gff for
BS17559.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2646798..2647648 | 14..864 | 99 | | Minus |
BS17559.pep Sequence
Translation from 16 to 975
> BS17559.pep
MNDYELETMLRINSIMVIRKLGSGSFGDIYEAKHMGSGLHVALKVERKNA
GQSHLSIESTVYNLLRHGMGIPMTYQFFSNRRHDVLVMELLGPSLETLFT
MCNRRFSMKTVLMLADQMVDRLEYLHLHHYVHRDIKPENFLMGVGLTRHR
LHLIDFGLSKRYWDMKENRHVPQRRGTKWAGTARYASVNALCCKVQSRRD
DLESVGYVLIYLLRGSLPWQGLLPNSKLQKAEMILEMKLSTLPNSLCAGY
PNEFYNYIIYTRQLGFEEEPDYRMIRCTFLSLLFNLKFTNDLIYDWDHAE
KNSGKSGSEEDRVVVKKVV*
BS17559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9962-PA | 319 | CG9962-PA | 1..319 | 1..319 | 1683 | 100 | Plus |
| dco-PD | 440 | CG2048-PD | 7..291 | 13..297 | 720 | 49.5 | Plus |
| dco-PC | 440 | CG2048-PC | 7..291 | 13..297 | 720 | 49.5 | Plus |
| dco-PB | 440 | CG2048-PB | 7..291 | 13..297 | 720 | 49.5 | Plus |
| dco-PA | 440 | CG2048-PA | 7..291 | 13..297 | 720 | 49.5 | Plus |
