Clone Sequence Records
BS17560.complete Sequence
1022 bp assembled on 2010-02-09
GenBank Submission: KX801933
> BS17560.complete
GAAGTTATCAGTCGACATGACAAATCGCGAAAAGATCCATTCCTTTCAGA
ACGAAAATTTCGAGGCAAATGCCTGTGGAAATATCTTATCGAAGCACAGA
ATGAAGCGATCAAATCCTGAAGGCCTGTTGGATGATGATCCCAATGCTTC
TGGTATGGGCTTACCGCCATCGGATCAAAACACCTGCCAGATGAGCCCCA
ATCTTGCTGCCCAGAGCCTATCCCCAGCTGTCCCCGTATCCTCACTTTCG
GACTACTACCAATCAAACTGGCAGCAGCCGCAACAGATGGAGTTGCAGAA
TCAGCAGCCGCACGGATGTGGCTTAGGCAGGATCAACCAGGGAACACCCA
ATGCCTACTACGAGCACGATGAGACTGAACAGAGGCGCCAGGAGCTGCGC
AATCTCGTCCAGCATTTGTACGTGGCCCAGGCGAGGGTCCAACTGGAGGC
CACCGAGATAAGGAAGGCTCAGTCGGTGGCCTCGGCTGCGCAGGCGCAAC
TGGAGGAGTCGGCCAACCATGTGCGCAGCATCACCGCCTCCTTGCACACT
GCACAGCAGGAAGTGGCTGCCTCGGCGATTCGGGCTCAGATCGCCCAGCT
TCAGCTGGCGGCCCATGATCAGCTGCTGTTCGCCGCTCGCCAGGATGTGG
ACGCGCTGTCCTCGCAAATGGTGGGTCTCCAGGCGGCGGAGGGCATTGTC
CAGCCGAAACTCACAGTGGATCTCCATGCTCTTTTGGACAAGCTGAAGCA
GCCACTCCAGAATTATGATCGCCCCACGGCCGTTCCCCTTATTGCACCCA
GTCTGCCGGGAACATTAAGCCATCAGCAACAGATGCTCTTGCAGCAGCAA
CAGATGGGGCAGGTTCAAGGTCAAGGGCCGATCCAAGGACAGGGCCAAAA
CCAGGATCAGGGACAGGGACCTGCGAATCCCTCAAATGGACCTACCCCCA
ACGATTTCATTAGCTTGCCTAGGGCTCATCACTATGCCAACATGGATTAC
ACTTAGAAGCTTTCTAGACCAT
BS17560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32846-RB | 1071 | CG32846-PB | 82..1071 | 17..1006 | 4950 | 100 | Plus |
| CG32846-RA | 990 | CG32846-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32846-RB | 1327 | CG32846-RB | 177..1166 | 17..1006 | 4950 | 100 | Plus |
| CG32846-RA | 1382 | CG32846-RA | 232..1221 | 17..1006 | 4950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2950335..2951195 | 1006..146 | 4305 | 100 | Minus |
| 3L | 28110227 | 3L | 2951258..2951387 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:45 has no hits.
BS17560.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:44 Download gff for
BS17560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:36 Download gff for
BS17560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 232..1221 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:31 Download gff for
BS17560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 232..1221 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:44 Download gff for
BS17560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 226..1225 | 10..1010 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:51 Download gff for
BS17560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 232..1221 | 17..1006 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:51 Download gff for
BS17560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2950335..2951194 | 147..1006 | 100 | <- | Minus |
| 3L | 2951258..2951387 | 17..146 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:31 Download gff for
BS17560.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2950335..2951194 | 147..1006 | 100 | <- | Minus |
| arm_3L | 2951258..2951387 | 17..146 | 100 | | Minus |
BS17560.3prime Sequence
860 bp (816 high quality bases) assembled on 2007-05-15
> BS17560.3prime
ATGGTCTAGAAAGCTTCTAAGTGTAATCCATGTTGGCATAGTGATGAGCC
CTAGGCAAGCTAATGAAATCGTTGGGGGTAGGTCCATTTGAGGGATTCGC
AGGTCCCTGTCCCTGATCCTGGTTTTGGCCCTGTCCTTGGATCGGCCCTT
GACCTTGAACCTGCCCCATCTGTTGCTGCTGCAAGAGCATCTGTTGCTGA
TGGCTTAATGTTCCCGGCAGACTGGGTGCAATAAGGGGAACGGCCGTGGG
GCGATCATAATTCTGGAGTGGCTGCTTCAGCTTGTCCAAAAGAGCATGGA
GATCCACTGTGAGTTTCGGCTGGACAATGCCCTCCGCCGCCTGGAGACCC
ACCATTTGCGAGGACAGCGCGTCCACATCCTGGCGAGCGGCGAACAGCAG
CTGATCATGGGCCGCCAGCTGAAGCTGGGCGATCTGAGCCCGAATCGCCG
AGGCAGCCACTTCCTGCTGTGCAGTGTGCAAGGAGGCGGTGATGCTGCGC
ACATGGTTGGCCGACTCCTCCAGTTGCGCCTGCGCAGCCGAGGCCACCGA
CTGAGCCTTCCTTATCTCGGTGGCCTCCAGTTGGACCCTCGCCTGGGCCA
CGTACAAATGCTGGACGAGATTGCGCAGCTCCTGGCGCCTCTGTTCAGTC
TCATCGTGCTCGTAGTAGGCATTGGGTGTTCCCTGGTTGATCCTGCCTAA
GCCACATCCGTGCGGCTGCTGATTCTGCAACTCCATCTGTTGCGGCTGCT
GCCAGTTTGATTGGTAGTAGTCCGAAAGTGAGGATACGGGGACAGCTGGG
GATAGGCTCTGGGCAGCAAGATTGGGGCTCATCTGGCAGGTGTTTTGATC
CGATGGCGGT
BS17560.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32846-PA | 990 | CG32846-RA | 147..990 | 860..17 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32846-RB | 1327 | CG32846-RB | 323..1166 | 860..17 | 4220 | 100 | Minus |
| CG32846-RA | 1382 | CG32846-RA | 378..1221 | 860..17 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:56:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2950335..2951178 | 17..860 | 4220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:56:56 has no hits.
BS17560.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:41 Download gff for
BS17560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-PA | 147..990 | 17..860 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 20:24:52 Download gff for
BS17560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 378..1225 | 13..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:23:24 Download gff for
BS17560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 378..1225 | 13..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:23:24 Download gff for
BS17560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2950331..2951178 | 13..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 20:24:52 Download gff for
BS17560.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2950331..2951178 | 13..860 | 99 | | Plus |
BS17560.5prime Sequence
842 bp (736 high quality bases) assembled on 2007-05-15
> BS17560.5prime
GAAGTTATCAGTCGACATGACAAATCGCGAAAAGATCCATTCCTTTCAGA
ACGAAAATTTCGAGGCAAATGCCTGTGGAAATATCTTATCGAAGCACAGA
ATGAAGCGATCAAATCCTGAAGGCCTGTTGGATGATGATCCCAATGCTTC
TGGTATGGGCTTACCGCCATCGGATCAAAACACCTGCCAGATGAGCCCCA
ATCTTGCTGCCCAGAGCCTATCCCCAGCTGTCCCCGTATCCTCACTTTCG
GACTACTACCAATCAAACTGGCAGCAGCCGCAACAGATGGAGTTGCAGAA
TCAGCAGCCGCACGGATGTGGCTTAGGCAGGATCAACCAGGGAACACCCA
ATGCCTACTACGAGCACGATGAGACTGAACAGAGGCGCCAGGAGCTGCGC
AATCTCGTCCAGCATTTGTACGTGGCCCAGGCGAGGGTCCAACTGGAGGC
CACCGAGATAAGGAAGGCTCAGTCGGTGGCCTCGGCTGCGCAGGCGCAAC
TGGAGGAGTCGGCCAACCATGTGCGCAGCATCACCGCCTCCTTGCACACT
GCACAGCAGGAAGTGGCTGCCTCGGCGATTCGGGCTCAGATCGCCCAGCT
TCAGCTGGCGGCCCATGATCAGCTGCTGTTCGCCGCTCGCCAGGATGTGG
ACGCGCTGTCCTCGCAAATGGTGGGTCTCCAGGCGGCGGAGGGCATTGTC
CAGCCGAAACTCACAGTGGATCTCCATGCTCTTTTGGACAAGCTGAAGCA
GCCACTCCAGAATTATGATCGCCCCACGGCCGTTCCCCTTATTGCACCCA
GTCTGCCGGGAACATTAAGCCATCAGCAACAGATGCTCTTGC
BS17560.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32846-PA | 990 | CG32846-RA | 1..826 | 17..842 | 4130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 11:53:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32846-RB | 1327 | CG32846-RB | 177..1002 | 17..842 | 4130 | 100 | Plus |
| CG32846-RA | 1382 | CG32846-RA | 232..1057 | 17..842 | 4130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 11:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2950499..2951195 | 842..146 | 3485 | 100 | Minus |
| 3L | 28110227 | 3L | 2951258..2951387 | 146..17 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 11:53:42 has no hits.
BS17560.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:29 Download gff for
BS17560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-PA | 1..826 | 17..842 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:46:16 Download gff for
BS17560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 226..1057 | 10..842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:17:02 Download gff for
BS17560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32846-RA | 226..1057 | 10..842 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:17:02 Download gff for
BS17560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2950499..2951194 | 147..842 | 100 | <- | Minus |
| 3L | 2951258..2951393 | 10..146 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:46:16 Download gff for
BS17560.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2950499..2951194 | 147..842 | 100 | <- | Minus |
| arm_3L | 2951258..2951393 | 10..146 | 97 | | Minus |
BS17560.pep Sequence
Translation from 16 to 1005
> BS17560.pep
MTNREKIHSFQNENFEANACGNILSKHRMKRSNPEGLLDDDPNASGMGLP
PSDQNTCQMSPNLAAQSLSPAVPVSSLSDYYQSNWQQPQQMELQNQQPHG
CGLGRINQGTPNAYYEHDETEQRRQELRNLVQHLYVAQARVQLEATEIRK
AQSVASAAQAQLEESANHVRSITASLHTAQQEVAASAIRAQIAQLQLAAH
DQLLFAARQDVDALSSQMVGLQAAEGIVQPKLTVDLHALLDKLKQPLQNY
DRPTAVPLIAPSLPGTLSHQQQMLLQQQQMGQVQGQGPIQGQGQNQDQGQ
GPANPSNGPTPNDFISLPRAHHYANMDYT*
BS17560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32846-PA | 329 | CG32846-PA | 1..329 | 1..329 | 1700 | 100 | Plus |
| CG32846-PB | 356 | CG32846-PB | 28..356 | 1..329 | 1700 | 100 | Plus |
