Clone Sequence Records
BS17561.complete Sequence
1127 bp assembled on 2010-02-09
GenBank Submission: KX805100
> BS17561.complete
GAAGTTATCAGTCGACATGGATAATGGGGAGGAGACCATGTTGCATCTGC
CCAGCTATGCTGATCGCTATACGGACATTCCCCGGCTTATCCGATTGAAG
TTCATTGCCCAGGTCTGTCCGGAGCTAAGTGTTCTTGCCCTCGAGTTGGC
CCTCAATCATGTGAAGACCACCTACAATGTCAAGTTGTACGACGAACTCT
ACAAAACACTGTGCGTTGAGGTGGACAGGAAGTACCCCAACCAGTCCAAG
GGGAACGAAGAACTTCATACCACTGGTGGAAGCGAGCCAAGTACGTCGAG
TGGCAGGGGGAGAGTTGTGGTTCCCTATGATTCCTACTGGGTGGAGGACA
ACATTATGGAGGCCACTCTGATGCTTCAGGAACTAGACGCCGAACTGAAC
TTCAAGAAATCGAATTCGGGCAGCTCCTATGTGCGACGCATTCTAGAGGA
GATCGGGGATCACCACGAGAAGAGTGGAAACTTGCAGATGGCGGTCAAGT
TTTATGCTCGAGCCAGGCCCTACTGTACCAGCAGCGAGAATGTCATCAAT
ATGTTCCGGAATCTGATTAGGGTATCAATTTATATGGAAAATTGGTGGCA
TGTCCTCACCTACATTGACGAGGCCAAGCAGTATGCCTATGGCTTTGAAA
ATCTGGCCCAGGAGGTTCCAGCACGTCTAAGCTGCGTCGCCGGTTTGGCT
CATTTGGGCCTAAAGATATACAAGTCTGCTGCCCAATATTTCCTGAGTAC
TCCGTATGGGCGTTACGACTACGATAAAATCGTGGCACCCGAAGATGTTA
CTTTATATGCTGGCCTTTGCGCTCTAGCCACTTTCGATCGGGAAACCTTA
CAGCTGAACGCTATCAACTCGGAAGCATTTAAGCCATTCTTTCAGCTTTC
GCCAAAAATGTGGACCATATTGGCCAAATTCTACGCGGGGGAATTCGATG
CCTGTATGACCCTGTTGCGCGAAATCGAAAATCATGTTAGGCTGGATGTT
TATTTGTCTCCCCATGTTAGTGCGCTTTACGATTTGATAATGGCCAGAAT
GCTGAAGAAAAGGAACAGGGAAGTTATGACGGAATCTGTGAAAAAGCGGA
AATCAAGATAAAAGCTTTCTAGACCAT
BS17561.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1a-RA | 1095 | CG4697-PA | 1..1095 | 17..1111 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1a-RA | 1301 | CG4697-RA | 96..1191 | 16..1111 | 5480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14762860..14763955 | 16..1111 | 5480 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:53 has no hits.
BS17561.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:45 Download gff for
BS17561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:38 Download gff for
BS17561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 1..1093 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:35 Download gff for
BS17561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 97..1189 | 17..1109 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:45 Download gff for
BS17561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 1..1095 | 17..1111 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:54 Download gff for
BS17561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 97..1189 | 17..1109 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:54 Download gff for
BS17561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14762861..14763953 | 17..1109 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:35 Download gff for
BS17561.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14762861..14763953 | 17..1109 | 100 | | Plus |
BS17561.3prime Sequence
892 bp (789 high quality bases) assembled on 2007-05-15
> BS17561.3prime
ATGGTCTAGAAAGCTTTTATCTTGATTTCCGCTTTTTCACAGATTCCGTC
ATAACTTCCCTGTTCCTTTTCTTCAGCATTCTGGCCATTATCAAATCGTA
AAGCGCACTAACATGGGGAGACAAATAAACATCCAGCCTAACATGATTTT
CGATTTCGCGCAACAGGGTCATACAGGCATCGAATTCCCCCGCGTAGAAT
TTGGCCAATATGGTCCACATTTTTGGCGAAAGCTGAAAGAATGGCTTAAA
TGCTTCCGAGTTGATAGCGTTCAGCTGTAAGGTTTCCCGATCGAAAGTGG
CTAGAGCGCAAAGGCCAGCATATAAAGTAACATCTTCGGGTGCCACGATT
TTATCGTAGTCGTAACGCCCATACGGAGTACTCAGGAAATATTGGGCAGC
AGACTTGTATATCTTTAGGCCCAAATGAGCCAAACCGGCGACGCAGCTTA
GACGTGCTGGAACCTCCTGGGCCAGATTTTCAAAGCCATAGGCATACTGC
TTGGCCTCGTCAATGTAGGTGAGGACATGCCACCAATTTTCCATATAAAT
TGATACCCTAATCAGATTCCGGAACATATTGATGACATTCTCGCTGCTGG
TACAGTAGGGCCTGGCTCGAGCATAAAACTTGACCGCCATCTGCAAGTTT
CCACTCTTCTCGTGGTGATCCCCGATCTCCTCTAGAATGCGTCGCACATA
GGAGCTGCCCGAATTCGATTTCTTGAAGTTCAGTTCGGCGTCTAGTTCCT
GAAGCATCAGAGTGGCCTCCATAATGTTGTCCTCCACCCAGTAAGAATCA
TAGGGAACCACAACTCTCCCCCTGCCACTCGACGTACTTGGCTCGCTTCA
CCAGTGGTATGAAGTTCTTCGTTCCCCTTGGACTGGTTGGGG
BS17561.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4697-PA | 1095 | CSN1a-RA | 263..1095 | 849..17 | 4140 | 99.8 | Minus |
| CG4697-PA | 1095 | CSN1a-RA | 219..262 | 892..849 | 220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:09:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1a-RA | 1301 | CG4697-RA | 315..1191 | 892..17 | 4345 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14763079..14763955 | 892..17 | 4320 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:09:56 has no hits.
BS17561.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:25 Download gff for
BS17561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4697-PA | 219..1095 | 17..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:27 Download gff for
BS17561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 315..1196 | 12..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:17 Download gff for
BS17561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 315..1196 | 12..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:17 Download gff for
BS17561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14763079..14763960 | 12..892 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:27 Download gff for
BS17561.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14763079..14763960 | 12..892 | 99 | | Minus |
BS17561.5prime Sequence
862 bp (824 high quality bases) assembled on 2007-05-15
> BS17561.5prime
GAAGTTATCAGTCGACATGGATAATGGGGAGGAGACCATGTTGCATCTGC
CCAGCTATGCTGATCGCTATACGGACATTCCCCGGCTTATCCGATTGAAG
TTCATTGCCCAGGTCTGTCCGGAGCTAAGTGTTCTTGCCCTCGAGTTGGC
CCTCAATCATGTGAAGACCACCTACAATGTCAAGTTGTACGACGAACTCT
ACAAAACACTGTGCGTTGAGGTGGACAGGAAGTACCCCAACCAGTCCAAG
GGGAACGAAGAACTTCATACCACTGGTGGAAGCGAGCCAAGTACGTCGAG
TGGCAGGGGGAGAGTTGTGGTTCCCTATGATTCCTACTGGGTGGAGGACA
ACATTATGGAGGCCACTCTGATGCTTCAGGAACTAGACGCCGAACTGAAC
TTCAAGAAATCGAATTCGGGCAGCTCCTATGTGCGACGCATTCTAGAGGA
GATCGGGGATCACCACGAGAAGAGTGGAAACTTGCAGATGGCGGTCAAGT
TTTATGCTCGAGCCAGGCCCTACTGTACCAGCAGCGAGAATGTCATCAAT
ATGTTCCGGAATCTGATTAGGGTATCAATTTATATGGAAAATTGGTGGCA
TGTCCTCACCTACATTGACGAGGCCAAGCAGTATGCCTATGGCTTTGAAA
ATCTGGCCCAGGAGGTTCCAGCACGTCTAAGCTGCGTCGCCGGTTTGGCT
CATTTGGGCCTAAAGATATACAAGTCTGCTGCCCAATATTTCCTGAGTAC
TCCGTATGGGCGTTACGACTACGATAAAATCGTGGCACCCGAAGATGTTA
CTTTATATGCTGGCCTTTGCGCTCTAGCCACTTTCGATCGGGAAACCTTA
CAGCTGAACGCT
BS17561.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4697-PA | 1095 | CSN1a-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:55:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1a-RA | 1301 | CG4697-RA | 96..942 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:55:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14762860..14763706 | 16..862 | 4235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:55:39 has no hits.
BS17561.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:27 Download gff for
BS17561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4697-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:33 Download gff for
BS17561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 90..942 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:15 Download gff for
BS17561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN1a-RA | 90..942 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:15 Download gff for
BS17561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14762860..14763706 | 16..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:33 Download gff for
BS17561.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14762860..14763706 | 16..862 | 100 | | Plus |
BS17561.pep Sequence
Translation from 16 to 1110
> BS17561.pep
MDNGEETMLHLPSYADRYTDIPRLIRLKFIAQVCPELSVLALELALNHVK
TTYNVKLYDELYKTLCVEVDRKYPNQSKGNEELHTTGGSEPSTSSGRGRV
VVPYDSYWVEDNIMEATLMLQELDAELNFKKSNSGSSYVRRILEEIGDHH
EKSGNLQMAVKFYARARPYCTSSENVINMFRNLIRVSIYMENWWHVLTYI
DEAKQYAYGFENLAQEVPARLSCVAGLAHLGLKIYKSAAQYFLSTPYGRY
DYDKIVAPEDVTLYAGLCALATFDRETLQLNAINSEAFKPFFQLSPKMWT
ILAKFYAGEFDACMTLLREIENHVRLDVYLSPHVSALYDLIMARMLKKRN
REVMTESVKKRKSR*
BS17561.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN1a-PA | 364 | CG4697-PA | 1..364 | 1..364 | 1897 | 100 | Plus |
| CSN1b-PA | 525 | CG3889-PA | 39..403 | 5..346 | 642 | 38.4 | Plus |
