Clone Sequence Records
BS17563.complete Sequence
644 bp assembled on 2010-02-09
GenBank Submission: KX806082
> BS17563.complete
GAAGTTATCAGTCGACATGCTGTCAGCTATTGTCTTAGTGTTAGTGCTTT
TTCAAGCGGCTTGTGGCTTCATCGTTACCCTGGATGCCCACGAGACGATG
TGCTTCTACGATCATGCCAATGTCAGCGACAAGGTGACCGTGTCCTTCGA
GGTAATGGAAGGTGGCTTCAAGGATGTGGGCGTGGAGATTGCTGGACCAG
ACGACGATCGCCTGCACCACTCCAAGCAGGACACCATGGGCAGCTTCACC
TTTACGGCCATGAAAGAGGGACGGTACCAATTGTGCTTCGACAATAAGAT
GTCCACGATGACGCCCAAGATCCTAATGTTCCAATTTCACGTTGCCAGGG
CCATTGAGTTCTACATGGACTCCTCGAAGCGAGTTGACGACGTCATCGAG
CAGGCGACGGTCCAATCGATGATCAACCAACTCTCCGCCAAACTGGGAGC
CGTGAAAATGGAGCAGGAGTACATGCACTTTCGCTATCGCGGTCACTTGG
AGGTCAGCGATATGGTGGAACTGCGAGTCCTGGCGTGGTCTATATTTGGA
CCAATGATGCTGATCATTACGGCCGTTCTGGAGGTATACTACCTCAAGCA
TTTCTTCGAAGTCAAGCGCGTGGTTTGAAAGCTTTCTAGACCAT
BS17563.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9308-RA | 612 | CG9308-PA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9308-RA | 823 | CG9308-RA | 78..690 | 17..629 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22034921..22035533 | 17..629 | 3065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:08:57 has no hits.
BS17563.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:46 Download gff for
BS17563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:40 Download gff for
BS17563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..688 | 17..627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:37 Download gff for
BS17563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..688 | 17..627 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:47 Download gff for
BS17563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..692 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:56 Download gff for
BS17563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..688 | 17..627 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:56 Download gff for
BS17563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22034921..22035531 | 17..627 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:37 Download gff for
BS17563.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17922426..17923036 | 17..627 | 100 | | Plus |
BS17563.3prime Sequence
642 bp (642 high quality bases) assembled on 2007-05-15
> BS17563.3prime
ATGGTCTAGAAAGCTTTCAAACCACGCGCTTGACTTCGAAGAAATGCTTG
AGGTAGTATACCTCCAGAACGGCCGTAATGATCAGCATCATTGGTCCAAA
TATAGACCACGCCAGGACTCGCAGTTCCACCATATCGCTGACCTCCAAGT
GACCGCGATAGCGAAAGTGCATGTACTCCTGCTCCATTTTCACGGCTCCC
AGTTTGGCGGAGAGTTGGTTGATCATCGATTGGACCGTCGCCTGCTCGAT
GACGTCGTCAACTCGCTTCGAGGAGTCCATGTAGAACTCAATGGCCCTGG
CAACGTGAAATTGGAACATTAGGATCTTGGGCGTCATCGTGGACATCTTA
TTGTCGAAGCACAATTGGTACCGTCCCTCTTTCATGGCCGTAAAGGTGAA
GCTGCCCATGGTGTCCTGCTTGGAGTGGTGCAGGCGATCGTCGTCTGGTC
CAGCAATCTCCACGCCCACATCCTTGAAGCCACCTTCCATTACCTCGAAG
GACACGGTCACCTTGTCGCTGACATTGGCATGATCGTAGAAGCACATCGT
CTCGTGGGCATCCAGGGTAACGATGAAGCCACAAGCCGCTTGAAAAAGCA
CTAACACTAAGACAATAGCTGACAGCATGTCGACTGATAACT
BS17563.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9308-PA | 612 | CG9308-RA | 1..612 | 628..17 | 3060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9308-RA | 823 | CG9308-RA | 78..690 | 628..16 | 3065 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22034921..22035533 | 628..16 | 3065 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:06:13 has no hits.
BS17563.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:43 Download gff for
BS17563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-PA | 1..612 | 17..628 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:12 Download gff for
BS17563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..692 | 12..628 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:37:51 Download gff for
BS17563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..692 | 12..628 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:37:51 Download gff for
BS17563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22034921..22035535 | 12..628 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:12 Download gff for
BS17563.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17922426..17923040 | 12..628 | 99 | | Minus |
BS17563.5prime Sequence
642 bp (642 high quality bases) assembled on 2007-05-15
> BS17563.5prime
GAAGTTATCAGTCGACATGCTGTCAGCTATTGTCTTAGTGTTAGTGCTTT
TTCAAGCGGCTTGTGGCTTCATCGTTACCCTGGATGCCCACGAGACGATG
TGCTTCTACGATCATGCCAATGTCAGCGACAAGGTGACCGTGTCCTTCGA
GGTAATGGAAGGTGGCTTCAAGGATGTGGGCGTGGAGATTGCTGGACCAG
ACGACGATCGCCTGCACCACTCCAAGCAGGACACCATGGGCAGCTTCACC
TTTACGGCCATGAAAGAGGGACGGTACCAATTGTGCTTCGACAATAAGAT
GTCCACGATGACGCCCAAGATCCTAATGTTCCAATTTCACGTTGCCAGGG
CCATTGAGTTCTACATGGACTCCTCGAAGCGAGTTGACGACGTCATCGAG
CAGGCGACGGTCCAATCGATGATCAACCAACTCTCCGCCAAACTGGGAGC
CGTGAAAATGGAGCAGGAGTACATGCACTTTCGCTATCGCGGTCACTTGG
AGGTCAGCGATATGGTGGAACTGCGAGTCCTGGCGTGGTCTATATTTGGA
CCAATGATGCTGATCATTACGGCCGTTCTGGAGGTATACTACCTCAAGCA
TTTCTTCGAAGTCAAGCGCGTGGTTTGAAAGCTTTCTAGACC
BS17563.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9308-PA | 612 | CG9308-RA | 1..612 | 17..628 | 3060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9308-RA | 823 | CG9308-RA | 78..690 | 17..629 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22034921..22035533 | 17..629 | 3065 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:27:50 has no hits.
BS17563.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:41 Download gff for
BS17563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-PA | 1..612 | 17..628 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:16:51 Download gff for
BS17563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..692 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:51:53 Download gff for
BS17563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9308-RA | 78..692 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:51:53 Download gff for
BS17563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22034921..22035535 | 17..633 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:16:51 Download gff for
BS17563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17922426..17923040 | 17..633 | 99 | | Plus |
BS17563.pep Sequence
Translation from 16 to 627
> BS17563.pep
MLSAIVLVLVLFQAACGFIVTLDAHETMCFYDHANVSDKVTVSFEVMEGG
FKDVGVEIAGPDDDRLHHSKQDTMGSFTFTAMKEGRYQLCFDNKMSTMTP
KILMFQFHVARAIEFYMDSSKRVDDVIEQATVQSMINQLSAKLGAVKMEQ
EYMHFRYRGHLEVSDMVELRVLAWSIFGPMMLIITAVLEVYYLKHFFEVK
RVV*
BS17563.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9308-PA | 203 | CG9308-PA | 1..203 | 1..203 | 1043 | 100 | Plus |
| CHOp24-PB | 208 | CG3564-PB | 15..208 | 8..203 | 409 | 40.8 | Plus |
| CHOp24-PA | 208 | CG3564-PA | 15..208 | 8..203 | 409 | 40.8 | Plus |
| eca-PA | 216 | CG33104-PA | 7..216 | 4..203 | 149 | 23.3 | Plus |
| p24-1-PB | 210 | CG1967-PB | 18..197 | 14..197 | 148 | 24.9 | Plus |
