Clone Sequence Records
BS17564.complete Sequence
1361 bp assembled on 2009-12-07
GenBank Submission: KX802277
> BS17564.complete
GAAGTTATCAGTCGACATGCAGAAGCGTAAACGCCGCTTCCTAAAAAAAG
GGCAGAACTTGATGATGCTGCGGACGCTTCGATTGGAAAAAGCCAAAAAG
GCTGAGCTCCAGAAAGAGCTGACTATTTACAATGCTTTAACCAAATGTAA
ATTAACCTCCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTTAAGAGCA
ATACGATAGGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAAGAACAAA
ATTCGAGCCGACGCCGCAGATGCTTTAGCTCATATAGCCAGTGGCTCATC
GGAGCACTCAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGATTGATTC
GCCTTCTTCAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTATATTGAGT
TTGGGGAATCTCTTGCACTTTGCTCCGAACCTCCGTGACTATATCATAAG
ACACGGACTTATGCAAAAGCTGATGTCTATTATTCAGGATAAAAGCACTT
GCACTTTAATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACTGTGCATA
AGCTCTCAACCATCGCCACCTGATAATGCAGCTGAGATCATTCAGGCATT
GAACATAGTATTGTACAACCCAGAGGCCAACGTTTTAGAGGACGCACTTA
TGGCAGTGCGTAATTTGGCCCATGGAAATGAAACGATTCAAATGTTACTT
GATTTTGAAGTTGTACCCAGGATCATATACTTGCTGGAGCATCCGAACGT
TACGGTTCAGAACGCCGCACTGCAAGCCCTAATAAATATAGCAACTGGAT
CCGAAGAGCAGATTCAAGAGTTGCTTAACAATAACCTTTTGCCCCATTTA
TCGGCTCTGATGTCCAATAGTGATCCAGATATTCGCTGTCAAGTTCTTAA
GCTTTTGCTAAACATCGCTGACGGAAATATATTCCAAAGGCACGCCATTA
TGAATGCAGGTCTCCTGCATAAAATACTGGAGTGCTTAAAAGCTGATGCG
ATTTCATTAAAATCTGCAGCTGCCTTGACAATCACCACGTTGGCCATCGA
TAAGGACAAGAATCTCCTGTGCTATCTTATGAGACAGGGAGTAATTCCAG
AGTTCTGCAATTTACTCTTCTGCCAGGAAAGAGACATCTTATCTAATGTG
CTCGATATACTGAGCACTATGCTAGATGTGGATCCATCTTTCTCGGCAGA
GGTGTCCGGCATCATCGAATGGAGTGGAGCTTTAAATAATATCAGGATGC
TCCAAAGCAGCGAACATGAGGAAATCGCAGCTGTGGCACGTAAAATCATT
GGTAACTACTTTCCCGCCAAACCACACATCGCAACTAAATTCTAAAAGCT
TTCTAGACCAT
BS17564.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1329 | CG10478-PA | 1..1329 | 17..1345 | 6645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..1399 | 17..1345 | 6645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6009556..6010584 | 1345..317 | 5145 | 100 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 316..17 | 1500 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:44:08 has no hits.
BS17564.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:48 Download gff for
BS17564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:07 Download gff for
BS17564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1327 | 17..1343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:17 Download gff for
BS17564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1397 | 17..1343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:48 Download gff for
BS17564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-RA | 1..1329 | 17..1345 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:37 Download gff for
BS17564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..1397 | 17..1343 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:37 Download gff for
BS17564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6009558..6010584 | 317..1343 | 100 | <- | Minus |
| 3L | 6010652..6010951 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:17 Download gff for
BS17564.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6002658..6003684 | 317..1343 | 100 | <- | Minus |
| arm_3L | 6003752..6004051 | 17..316 | 100 | | Minus |
BS17564.3prime Sequence
934 bp (790 high quality bases) assembled on 2007-05-15
> BS17564.3prime
ATGGTCTAGAAAGCTTTTAGAATTTAGTTGCGATGTGTGGTTTGGCGGGA
AAGTAGTTACCAATGATTTTACGTGCCACAGCTGCGATTTCCTCATGTTC
GCTGCTTTGGAGCATCCTGATATTATTTAAAGCTCCACTCCATTCGATGA
TGCCGGACACCTCTGCCGAGAAAGATGGATCCACATCTAGCATAGTGCTC
AGTATATCGAGCACATTAGATAAGATGTCTCTTTCCTGGCAGAAGAGTAA
ATTGCAGAACTCTGGAATTACTCCCTGTCTCATAAGATAGCACAGGAGAT
TCTTGTCCTTATCGATGGCCAACGTGGTGATTGTCAAGGCAGCTGCAGAT
TTTAATGAAATCGCATCAGCTTTTAAGCACTCCAGTATTTTATGCAGGAG
ACCTGCATTCATAATGGCGTGCCTTTGGAATATATTTCCGTCAGCGATGT
TTAGCAAAAGCTTAAGAACTTGACAGCGAATATCTGGATCACTATTGGAC
ATCAGAGCCGATAAATGGGGCAAAAGGTTATTGTTAAGCAACTCTTGAAT
CTGCTCTTCGGATCCAGTTGCTATATTTATTAGGGCTTGCAGTGCGGCGT
TCTGAACCGTAACGTTCGGATGCTCCAGCAAGTATATGATCCTGGGTACA
ACTTCAAAATCAAGTAACATTTGAATCGTTTCATTTCCATGGGCCAAATT
ACGCACTGCCATAAGTGCGTCCTCTAAAACGTTGGCCTCTGGGTTGTACA
ATACTATGTTCAATGCCTGAATGATCTCAGCTGCATTATCAGGTGGCGAT
GGTTGAGAGCTTATGCACAGTTTTCTTAGAACCCAGGTTACATGACTCAA
CATTAAAGTGCAAGTGCTTTTATCCTGAATAATAGACATCAGCTTTTGCA
TAAGTCCGTGTCTTATGATATAGTCACGGAAGGT
BS17564.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10478-PA | 1329 | CG10478-RA | 416..1329 | 930..17 | 4570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 486..1399 | 930..17 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6009556..6010469 | 17..930 | 4570 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:29 has no hits.
BS17564.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:50 Download gff for
BS17564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-PA | 413..1329 | 17..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:45 Download gff for
BS17564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 483..1409 | 7..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:24 Download gff for
BS17564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 483..1409 | 7..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:24 Download gff for
BS17564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6009546..6010472 | 7..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:45 Download gff for
BS17564.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6002646..6003572 | 7..934 | 99 | | Plus |
BS17564.5prime Sequence
858 bp (803 high quality bases) assembled on 2007-05-15
> BS17564.5prime
GAAGTTATCAGTCGACATGCAGAAGCGTAAACGCCGCTTCCTAAAAAAAG
GGCAGAACTTGATGATGCTGCGGACGCTTCGATTGGAAAAAGCCAAAAAG
GCTGAGCTCCAGAAAGAGCTGACTATTTACAATGCTTTAACCAAATGTAA
ATTAACCTCCTCGGAAGTTGTTCCCGACGTCAATAAGTTACTTAAGAGCA
ATACGATAGGAAACCTGGTGGAGTCCCTTGGCCACGGAAATAAGAACAAA
ATTCGAGCCGACGCCGCAGATGCTTTAGCTCATATAGCCAGTGGCTCATC
GGAGCACTCAAATTTAATTGCGAAGGCTGGCGCCGTGCCACGATTGATTC
GCCTTCTTCAGTCACCCGATCCTGAAGTCTGCGAAAAGGGTATATTGAGT
TTGGGGAATCTCTTGCACTTTGCTCCGAACCTCCGTGACTATATCATAAG
ACACGGACTTATGCAAAAGCTGATGTCTATTATTCAGGATAAAAGCACTT
GCACTTTAATGTTGAGTCATGTAACCTGGGTTCTAAGAAAACTGTGCATA
AGCTCTCAACCATCGCCACCTGATAATGCAGCTGAGATCATTCAGGCATT
GAACATAGTATTGTACAACCCAGAGGCCAACGTTTTAGAGGACGCACTTA
TGGCAGTGCGTAATTTGGCCCATGGAAATGAAACGATTCAAATGTTACTT
GATTTTGAAGTTGTACCCAGGATCATATACTTGCTGGAGCATCCGAACGT
TACGGTTCAGAACGCCGCACTGCAAGCCCTAATAAATATAGCAACTGGAT
CCGAAGAGCAGATTCAAGAGTTGCTTAACAATAACCTTTTGCCCCATTTA
TCGGCTCT
BS17564.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10478-PA | 1329 | CG10478-RA | 1..842 | 17..858 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:16:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-RA | 1509 | CG10478-RA | 71..912 | 17..858 | 4210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:16:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6010043..6010584 | 858..317 | 2710 | 100 | Minus |
| 3L | 28110227 | 3L | 6010652..6010951 | 316..17 | 1500 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:16:40 has no hits.
BS17564.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:34 Download gff for
BS17564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10478-PA | 1..842 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:12:39 Download gff for
BS17564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..912 | 17..858 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:17 Download gff for
BS17564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaKap4-RA | 71..912 | 17..858 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:17 Download gff for
BS17564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6010043..6010584 | 317..858 | 100 | <- | Minus |
| 3L | 6010652..6010951 | 17..316 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:12:39 Download gff for
BS17564.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6003143..6003684 | 317..858 | 100 | <- | Minus |
| arm_3L | 6003752..6004051 | 17..316 | 100 | | Minus |
BS17564.pep Sequence
Translation from 16 to 1344
> BS17564.pep
MQKRKRRFLKKGQNLMMLRTLRLEKAKKAELQKELTIYNALTKCKLTSSE
VVPDVNKLLKSNTIGNLVESLGHGNKNKIRADAADALAHIASGSSEHSNL
IAKAGAVPRLIRLLQSPDPEVCEKGILSLGNLLHFAPNLRDYIIRHGLMQ
KLMSIIQDKSTCTLMLSHVTWVLRKLCISSQPSPPDNAAEIIQALNIVLY
NPEANVLEDALMAVRNLAHGNETIQMLLDFEVVPRIIYLLEHPNVTVQNA
ALQALINIATGSEEQIQELLNNNLLPHLSALMSNSDPDIRCQVLKLLLNI
ADGNIFQRHAIMNAGLLHKILECLKADAISLKSAAALTITTLAIDKDKNL
LCYLMRQGVIPEFCNLLFCQERDILSNVLDILSTMLDVDPSFSAEVSGII
EWSGALNNIRMLQSSEHEEIAAVARKIIGNYFPAKPHIATKF*
BS17564.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaKap4-PA | 442 | CG10478-PA | 1..442 | 1..442 | 2221 | 100 | Plus |
| Kap-alpha3-PD | 514 | CG9423-PD | 69..480 | 22..432 | 694 | 39.5 | Plus |
| Kap-alpha3-PC | 514 | CG9423-PC | 69..480 | 22..432 | 694 | 39.5 | Plus |
| Kap-alpha3-PB | 514 | CG9423-PB | 69..480 | 22..432 | 694 | 39.5 | Plus |
| Kap-alpha3-PA | 514 | CG9423-PA | 69..480 | 22..432 | 694 | 39.5 | Plus |
