Clone Sequence Records
BS17566.complete Sequence
1325 bp assembled on 2009-12-07
GenBank Submission: KX805565
> BS17566.complete
GAAGTTATCAGTCGACATGAGCGATAACGAGCTTTCATACGCCGTTACCC
GAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACCTATGGTCTCGCAA
CCAATGGCCGGAGTTGGGGAGAATGCCTACGGACAGGTTCTCCGGGTGAG
TTGGCCCACGATCGTGGACGCAGCCACCGTGGTGGTCAAAATGGCGCCTA
GGAACGAGGCCCGAAGATCCCATATGCACGTCGTGGACTACTATGCTCGT
GAAGTCTTCATGTACCAGAAGGTGTTTCCCGTTTTCCGGGCGCTATCTCC
AGATCGGAACACTTTCACCGTGGCGCCGGCCCTACAGGCCAATGACTTGA
AAGCTCCCGATGAGTTCTTGATATTCGAGGACCTGTCTGAGAGTGGATTT
CGGCCCAATTCACGCTGTATTATGCCTACCTACGACATCGTGGTCTGCTC
CCTGAAAGCTTTAGCGGAGCTGCATGCGTGCTCCTTCATCCTGCAGCAGA
CCGATCCCTTGCAGTTCAAGCAGTTGGTGGAGTTCGTGGAGAAGGACAAC
CTATTTACATCTGACATTGAGGAGGTCACAATTGAGTTTGGAAAGGCGCA
GCTGCGCAAGGCGAGAATCATCCTGAAAGAATCCGATGGCGACCAAGTGG
CCGCGGTCCAGGAAGTCCTGCAATTGTGTGAAAACCAGCTGAAATCCTTG
GCTCTTTACTGTGTGGATGGAAAGGCGCAGGCGCCACATGCTGTTATCTG
TCACGGTGACTTCTGGAATAACAATATTCTCTATAGACATGAGCCTAATT
CTGATCAACCTGTGGAGGCCAAGCTGATCGACTTTCAAATGTCTCGCTAT
GCACCGCCGGTACTGGACATAGTCCATTACCTGTTTGCCTGCACGGAGAA
ACGATTGCGGGACGAGCACTTCCCCGACTTTATGGATGCTTACTACAACA
CGATGGACCAGAAATTGAAGTCCTGCAATCTTTCCCTCGAGGGCATATAT
CCGCGCAGCGTCTTCAATCGGCAATTGCAACAGTACGGCGTTTACGGCTT
GATAATGGGAGCATTTTCGCTACCCTTTTTCATTTCCAATGCCAACGAAG
TGATTGATATCGATACTGTTTCCGAGGCCATCCAAAGTATTTCGACATCC
TCTGATGAACCCAAGTACAAGGAGCTCATTGAAGAATACGAAATGCTCAA
CGCCCGGACTTTACCAATTTTCAAGCGGCGAATCACTGGTATCGTCGAGG
ATCTTATAAAATACAACATGACGGAGCCGCTGTTCAAAATGGACTCCGAG
CAGTGCTAAAAGCTTTCTAGACCAT
BS17566.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-RA | 1293 | CG13813-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-RA | 1527 | CG13813-RA | 52..1345 | 17..1310 | 6470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20231720..20232496 | 17..793 | 3885 | 100 | Plus |
| 3L | 28110227 | 3L | 20232555..20233073 | 792..1310 | 2595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:44:53 has no hits.
BS17566.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:35 Download gff for
BS17566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 1..1293 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:12 Download gff for
BS17566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 1..1291 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:36 Download gff for
BS17566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 52..1342 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:36 Download gff for
BS17566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 1..1293 | 17..1309 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:55 Download gff for
BS17566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 52..1342 | 17..1307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:55 Download gff for
BS17566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20231720..20232496 | 17..793 | 100 | -> | Plus |
| 3L | 20232557..20233070 | 794..1307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:36 Download gff for
BS17566.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20224820..20225596 | 17..793 | 100 | -> | Plus |
| arm_3L | 20225657..20226170 | 794..1307 | 100 | | Plus |
BS17566.3prime Sequence
879 bp (860 high quality bases) assembled on 2007-05-15
> BS17566.3prime
ATGGTCTAGAAAGCTTTTAGCACTGCTCGGAGTCCATTTTGAACAGCGGC
TCCGTCATGTTGTATTTTATAAGATCCTCGACGATACCAGTGATTCGCCG
CTTGAAAATTGGTAAAGTCCGGGCGTTGAGCATTTCGTATTCTTCAATGA
GCTCCTTGTACTTGGGTTCATCAGAGGATGTCGAAATACTTTGGATGGCC
TCGGAAACAGTATCGATATCAATCACTTCGTTGGCATTGGAAATGAAAAA
GGGTAGCGAAAATGCTCCCATTATCAAGCCGTAAACGCCGTACTGTTGCA
ATTGCCGATTGAAGACGCTGCGCGGATATATGCCCTCGAGGGAAAGATTG
CAGGACTTCAATTTCTGGTCCATCGTGTTGTAGTAAGCATCCATAAAGTC
GGGGAAGTGCTCGTCCCGCAATCGTTTCTCCGTGCAGGCAAACAGGTAAT
GGACTATGTCCAGTACCGGCGGTGCATAGCGAGACATTTGAAAGTCGATC
AGCTTGGCCTCCACAGGTTGATCAGAATTAGGCTCATGTCTATAGAGAAT
ATTGTTATTCCAGAAGTCACCGTGACAGATAACAGCATGTGGCGCCTGCG
CCTTTCCATCCACACAGTAAAGAGCCAAGGATTTCAGCTGGTTTTCACAC
AATTGCAGGACTTCCTGGACCGCGGCCACTTGGTCGCCATCGGATTCTTT
CAGGATGATTCTCGCCTTGCGCAGCTGCGCCTTTCCAAACTCAATTGTGA
CCTCCTCAATGTCAGATGTAAATAGGTTGTCCTTCTCCACGAACTCCACC
AACTGCTTGAACTGCAAGGGATCGGTCTGCTGCAGGATGAAGGAGCACGC
ATGCAGCTCCGCTAAAGCTTTCAGGGAGC
BS17566.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-PA | 1293 | CG13813-RA | 431..1293 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-RA | 1527 | CG13813-RA | 482..1345 | 879..16 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20232555..20233073 | 534..16 | 2595 | 100 | Minus |
| 3L | 28110227 | 3L | 20232150..20232496 | 879..533 | 1735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:14:16 has no hits.
BS17566.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:09 Download gff for
BS17566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-PA | 431..1293 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:00 Download gff for
BS17566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 482..1355 | 5..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:57 Download gff for
BS17566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 482..1355 | 5..879 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:57 Download gff for
BS17566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20232150..20232496 | 533..879 | 100 | -> | Minus |
| 3L | 20232557..20233083 | 5..532 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:00 Download gff for
BS17566.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20225250..20225596 | 533..879 | 100 | -> | Minus |
| arm_3L | 20225657..20226183 | 5..532 | 99 | | Minus |
BS17566.5prime Sequence
802 bp (801 high quality bases) assembled on 2007-05-15
> BS17566.5prime
GAAGTTATCAGTCGACATGAGCGATAACGAGCTTTCATACGCCGTTACCC
GAGTCCTTTTGGAGCTGTATCAACGCCATGGTATACCTATGGTCTCGCAA
CCAATGGCCGGAGTTGGGGAGAATGCCTACGGACAGGTTCTCCGGGTGAG
TTGGCCCACGATCGTGGACGCAGCCACCGTGGTGGTCAAAATGGCGCCTA
GGAACGAGGCCCGAAGATCCCATATGCACGTCGTGGACTACTATGCTCGT
GAAGTCTTCATGTACCAGAAGGTGTTTCCCGTTTTCCGGGCGCTATCTCC
AGATCGGAACACTTTCACCGTGGCGCCGGCCCTACAGGCCAATGACTTGA
AAGCTCCCGATGAGTTCTTGATATTCGAGGACCTGTCTGAGAGTGGATTT
CGGCCCAATTCACGCTGTATTATGCCTACCTACGACATCGTGGTCTGCTC
CCTGAAAGCTTTAGCGGAGCTGCATGCGTGCTCCTTCATCCTGCAGCAGA
CCGATCCCTTGCAGTTCAAGCAGTTGGTGGAGTTCGTGGAGAAGGACAAC
CTATTTACATCTGACATTGAGGAGGTCACAATTGAGTTTGGAAAGGCGCA
GCTGCGCAAGGCGAGAATCATCCTGAAAGAATCCGATGGCGACCAAGTGG
CCGCGGTCCAGGAAGTCCTGCAATTGTGTGAAAACCAGCTGAAATCCTTG
GCTCTTTACTGTGTGGATGGAAAGGCGCAGGCGCCACATGCTGTTATCTG
TCACGGTGACTTCTGGAATACAATATTCTCTATAGACATGAGCCTAATTC
TG
BS17566.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-PA | 1293 | CG13813-RA | 1..754 | 17..770 | 3770 | 100 | Plus |
| CG13813-PA | 1293 | CG13813-RA | 755..787 | 770..802 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-RA | 1527 | CG13813-RA | 52..838 | 17..802 | 3910 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:02:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20231720..20232496 | 17..792 | 3835 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:02:24 has no hits.
BS17566.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:47 Download gff for
BS17566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-PA | 1..787 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:52:31 Download gff for
BS17566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 52..838 | 17..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:30:14 Download gff for
BS17566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13813-RA | 52..838 | 17..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:30:14 Download gff for
BS17566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20231720..20232502 | 17..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:52:31 Download gff for
BS17566.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20224820..20225602 | 17..802 | 99 | | Plus |
BS17566.pep Sequence
Translation from 16 to 1308
> BS17566.pep
MSDNELSYAVTRVLLELYQRHGIPMVSQPMAGVGENAYGQVLRVSWPTIV
DAATVVVKMAPRNEARRSHMHVVDYYAREVFMYQKVFPVFRALSPDRNTF
TVAPALQANDLKAPDEFLIFEDLSESGFRPNSRCIMPTYDIVVCSLKALA
ELHACSFILQQTDPLQFKQLVEFVEKDNLFTSDIEEVTIEFGKAQLRKAR
IILKESDGDQVAAVQEVLQLCENQLKSLALYCVDGKAQAPHAVICHGDFW
NNNILYRHEPNSDQPVEAKLIDFQMSRYAPPVLDIVHYLFACTEKRLRDE
HFPDFMDAYYNTMDQKLKSCNLSLEGIYPRSVFNRQLQQYGVYGLIMGAF
SLPFFISNANEVIDIDTVSEAIQSISTSSDEPKYKELIEEYEMLNARTLP
IFKRRITGIVEDLIKYNMTEPLFKMDSEQC*
BS17566.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13813-PA | 430 | CG13813-PA | 1..430 | 1..430 | 2231 | 100 | Plus |
| CG1561-PB | 635 | CG1561-PB | 258..633 | 34..417 | 372 | 26.9 | Plus |
| CG9259-PC | 422 | CG9259-PC | 40..355 | 24..346 | 308 | 28.4 | Plus |
| CG9259-PB | 422 | CG9259-PB | 40..355 | 24..346 | 308 | 28.4 | Plus |
| CG9259-PA | 422 | CG9259-PA | 40..355 | 24..346 | 308 | 28.4 | Plus |
