Clone BS17568 Report

Search the DGRC for BS17568

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG13659-RA
Protein status:BS17568.pep: full length peptide match
Sequenced Size:1286

Clone Sequence Records

BS17568.complete Sequence

1286 bp assembled on 2009-12-07

GenBank Submission: KX800235

> BS17568.complete
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCA
GGAGTATCGAAACAATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAG
ACTTCCATTCCCGCAACATGATGTTTAAGAACAATAAGGAAACAGGATGC
TTCGAGGACTGCATGCTGCTGGATTATCAGGGCTGTAATGTGGCTCCAAT
GGCCGTTGATCTTATGTACTCCATTTACATGTTGATGGGGCCAGCACAGC
GAAGAGAGGAGCTGGACATTTTGTTAAACTACTACCTATCCATCCTCCTA
GAGACTCTCAAGAAGATTGGCTACCAAGGATCAATGCCGACGGAACAAGG
ATTTTGGGCGGAAATGAAACGCCACAGATATTACGAGTTTCTACTGCTGA
GCACATTCTTGCCAGTTTCGATTGGGTTGCGAACCCATAAGTTGGATATA
GGTGATATGATGCACAACGAAGAAACCCGCAAGAAACTATATCAGCTAGA
GGATTTTATGGAAGAAACCAAATCCATATTAGACAGATTCCAGAAATCGG
GATATTTTGACGACTTTTAAAAGCTTTCTAGACCAT

BS17568.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1254 CG13659-PA 1..1254 17..1270 6255 99.9 Plus
CG31370-RB 1191 CG31370-PB 585..879 637..931 395 75.6 Plus
CG31436-RA 1263 CG31436-PA 118..452 122..456 310 72.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1301 CG13659-RA 21..1274 17..1270 6255 99.9 Plus
CG31370-RB 1408 CG31370-RB 682..976 637..931 395 75.6 Plus
CG31436-RA 1402 CG31436-RA 195..529 122..456 310 72.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25300911..25301453 17..559 2700 99.8 Plus
3R 32079331 3R 25301518..25302045 558..1085 2640 100 Plus
3R 32079331 3R 25302105..25302290 1085..1270 930 100 Plus
3R 32079331 3R 25303208..25303502 637..931 395 75.6 Plus
Blast to na_te.dros performed on 2014-11-28 01:44:46 has no hits.

BS17568.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:37 Download gff for BS17568.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 1..1254 17..1270 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:11 Download gff for BS17568.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 1..1252 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:32 Download gff for BS17568.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 21..1272 17..1268 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:37 Download gff for BS17568.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 1..1254 17..1270 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:51 Download gff for BS17568.complete
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 21..1272 17..1268 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:51 Download gff for BS17568.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25300911..25301453 17..559 99 -> Plus
3R 25301520..25302045 560..1085 100 -> Plus
3R 25302106..25302288 1086..1268 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:32 Download gff for BS17568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21126633..21127175 17..559 99 -> Plus
arm_3R 21127242..21127767 560..1085 100 -> Plus
arm_3R 21127828..21128010 1086..1268 100   Plus

BS17568.3prime Sequence

893 bp (793 high quality bases) assembled on 2007-05-15

> BS17568.3prime
ATGGTCTAGAAAGCTTTTAAAAGTCGTCAAAATATCCCGATTTCTGGAAT
CTGTCTAATATGGATTTGGTTTCTTCCATAAAATCCTCTAGCTGATATAG
TTTCTTGCGGGTTTCTTCGTTGTGCATCATATCACCTATATCCAACTTAT
GGGTTCGCAACCCAATCGAAACTGGCAAGAATGTGCTCAGCAGTAGAAAC
TCGTAATATCTGTGGCGTTTCATTTCCGCCCAAAATCCTTGTTCCGTCGG
CATTGATCCTTGGTAGCCAATCTTCTTGAGAGTCTCTAGGAGGATGGATA
GGTAGTAGTTTAACAAAATGTCCAGCTCCTCTCTTCGCTGTGCTGGCCCC
ATCAACATGTAAATGGAGTACATAAGATCAACGGCCATTGGAGCCACATT
ACAGCCCTGATAATCCAGCAGCATGCAGTCCTCGAAGCATCCTGTTTCCT
TATTGTTCTTAAACATCATGTTGCGGGAATGGAAGTCTGCGTGGCAGAGA
ACGTTGTATCCTGGCTGGGGATTGTTTCGATACTCCTGCATAGTCTCTCG
CAATCGGTCCTTAAAATGCAGACTTATTTTCTTAAAATGCGGCTGGTATT
TGCTGAGTTCAGGAATCCGTCCCAACATTTCCATAAATGGATCCATGCCT
CCGCTTATAATGGAACTGTCTATCAGCCCGGGCATTTCACACAATCCGTT
CTTAAACTCCTTCAGATATTCAGGTTGCTCGTGAATAAACTTCATACTGA
TTGCATGGATCTTGGCCAACTTGGAGTAGGCACTGCTGATTTCTTCCCGT
GTAAGGAAACGATCACGCACAACTGCATATCCCATCTCGACGAGATCGTC
GAAGATGAGAATCTGATGTGGCTGTAGACTGTGATAAATGCAC

BS17568.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-PA 1254 CG13659-RA 378..1254 893..17 4385 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1301 CG13659-RA 398..1274 893..17 4385 100 Minus
CG31370-RB 1408 CG31370-RB 682..976 650..356 400 76.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25301518..25302045 729..202 2640 100 Minus
3R 32079331 3R 25302105..25302290 202..17 930 100 Minus
3R 32079331 3R 25301288..25301453 893..728 830 100 Minus
3R 32079331 3R 25303208..25303502 650..356 395 75.6 Minus
Blast to na_te.dros performed on 2015-02-11 04:10:29 has no hits.

BS17568.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:38 Download gff for BS17568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-PA 378..1254 17..893 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:37 Download gff for BS17568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 398..1283 9..893 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:26 Download gff for BS17568.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 398..1283 9..893 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:26 Download gff for BS17568.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25301288..25301453 728..893 100 -> Minus
3R 25301520..25302045 202..727 100 -> Minus
3R 25302106..25302299 9..201 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:37 Download gff for BS17568.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21127010..21127175 728..893 100 -> Minus
arm_3R 21127242..21127767 202..727 100 -> Minus
arm_3R 21127828..21128021 9..201 98   Minus

BS17568.5prime Sequence

807 bp (797 high quality bases) assembled on 2007-05-15

> BS17568.5prime
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCA
GGAGTATCGAAAACATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAG
ACTTCCA

BS17568.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-PA 1254 CG13659-RA 1..791 17..807 3880 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-RA 1301 CG13659-RA 21..811 17..807 3910 99.6 Plus
CG31436-RA 1402 CG31436-RA 195..529 122..456 310 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25300911..25301453 17..559 2700 99.8 Plus
3R 32079331 3R 25301518..25301767 558..807 1220 99.2 Plus
Blast to na_te.dros performed on 2015-02-12 10:35:59 has no hits.

BS17568.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:36 Download gff for BS17568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-PA 1..790 17..806 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:23 Download gff for BS17568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 15..810 11..806 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:47 Download gff for BS17568.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13659-RA 15..810 11..806 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:47 Download gff for BS17568.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25300905..25301453 11..559 99 -> Plus
3R 25301520..25301766 560..806 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:23 Download gff for BS17568.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21126627..21127175 11..559 99 -> Plus
arm_3R 21127242..21127488 560..806 99   Plus

BS17568.pep Sequence

Translation from 16 to 1269

> BS17568.pep
MAEESFNDDELNPPEWLNVQFMTQVLRGYEKDSNLKVINLSFTPASAKGD
HYASIMFRARVEYTAQNGNFTKSLIIKTMIVEEGIKKDMFKDSPLFTTEI
GMYTKVLPEWERILRRANDPAKLYVECIYHSLQPHQILIFDDLVEMGYAV
VRDRFLTREEISSAYSKLAKIHAISMKFIHEQPEYLKEFKNGLCEMPGLI
DSSIISGGMDPFMEMLGRIPELSKYQPHFKKISLHFKDRLRETMQEYRNN
PQPGYNVLCHADFHSRNMMFKNNKETGCFEDCMLLDYQGCNVAPMAVDLM
YSIYMLMGPAQRREELDILLNYYLSILLETLKKIGYQGSMPTEQGFWAEM
KRHRYYEFLLLSTFLPVSIGLRTHKLDIGDMMHNEETRKKLYQLEDFMEE
TKSILDRFQKSGYFDDF*

BS17568.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG13659-PA 417 CG13659-PA 1..417 1..417 2204 100 Plus
CG31370-PB 396 CG31370-PB 1..395 1..416 1280 60.6 Plus
CG31300-PA 422 CG31300-PA 8..419 4..414 1173 52.7 Plus
CG11893-PA 416 CG11893-PA 8..415 4..416 1162 51.4 Plus
CG31436-PA 420 CG31436-PA 10..416 6..412 1153 54.2 Plus