Clone Sequence Records
BS17568.complete Sequence
1286 bp assembled on 2009-12-07
GenBank Submission: KX800235
> BS17568.complete
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCA
GGAGTATCGAAACAATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAG
ACTTCCATTCCCGCAACATGATGTTTAAGAACAATAAGGAAACAGGATGC
TTCGAGGACTGCATGCTGCTGGATTATCAGGGCTGTAATGTGGCTCCAAT
GGCCGTTGATCTTATGTACTCCATTTACATGTTGATGGGGCCAGCACAGC
GAAGAGAGGAGCTGGACATTTTGTTAAACTACTACCTATCCATCCTCCTA
GAGACTCTCAAGAAGATTGGCTACCAAGGATCAATGCCGACGGAACAAGG
ATTTTGGGCGGAAATGAAACGCCACAGATATTACGAGTTTCTACTGCTGA
GCACATTCTTGCCAGTTTCGATTGGGTTGCGAACCCATAAGTTGGATATA
GGTGATATGATGCACAACGAAGAAACCCGCAAGAAACTATATCAGCTAGA
GGATTTTATGGAAGAAACCAAATCCATATTAGACAGATTCCAGAAATCGG
GATATTTTGACGACTTTTAAAAGCTTTCTAGACCAT
BS17568.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1254 | CG13659-PA | 1..1254 | 17..1270 | 6255 | 99.9 | Plus |
CG31370-RB | 1191 | CG31370-PB | 585..879 | 637..931 | 395 | 75.6 | Plus |
CG31436-RA | 1263 | CG31436-PA | 118..452 | 122..456 | 310 | 72.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1301 | CG13659-RA | 21..1274 | 17..1270 | 6255 | 99.9 | Plus |
CG31370-RB | 1408 | CG31370-RB | 682..976 | 637..931 | 395 | 75.6 | Plus |
CG31436-RA | 1402 | CG31436-RA | 195..529 | 122..456 | 310 | 72.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25300911..25301453 | 17..559 | 2700 | 99.8 | Plus |
3R | 32079331 | 3R | 25301518..25302045 | 558..1085 | 2640 | 100 | Plus |
3R | 32079331 | 3R | 25302105..25302290 | 1085..1270 | 930 | 100 | Plus |
3R | 32079331 | 3R | 25303208..25303502 | 637..931 | 395 | 75.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:44:46 has no hits.
BS17568.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:37 Download gff for
BS17568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 1..1254 | 17..1270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:11 Download gff for
BS17568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 1..1252 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:32 Download gff for
BS17568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 21..1272 | 17..1268 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:37 Download gff for
BS17568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 1..1254 | 17..1270 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:51 Download gff for
BS17568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 21..1272 | 17..1268 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:51 Download gff for
BS17568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25300911..25301453 | 17..559 | 99 | -> | Plus |
3R | 25301520..25302045 | 560..1085 | 100 | -> | Plus |
3R | 25302106..25302288 | 1086..1268 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:32 Download gff for
BS17568.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21126633..21127175 | 17..559 | 99 | -> | Plus |
arm_3R | 21127242..21127767 | 560..1085 | 100 | -> | Plus |
arm_3R | 21127828..21128010 | 1086..1268 | 100 | | Plus |
BS17568.3prime Sequence
893 bp (793 high quality bases) assembled on 2007-05-15
> BS17568.3prime
ATGGTCTAGAAAGCTTTTAAAAGTCGTCAAAATATCCCGATTTCTGGAAT
CTGTCTAATATGGATTTGGTTTCTTCCATAAAATCCTCTAGCTGATATAG
TTTCTTGCGGGTTTCTTCGTTGTGCATCATATCACCTATATCCAACTTAT
GGGTTCGCAACCCAATCGAAACTGGCAAGAATGTGCTCAGCAGTAGAAAC
TCGTAATATCTGTGGCGTTTCATTTCCGCCCAAAATCCTTGTTCCGTCGG
CATTGATCCTTGGTAGCCAATCTTCTTGAGAGTCTCTAGGAGGATGGATA
GGTAGTAGTTTAACAAAATGTCCAGCTCCTCTCTTCGCTGTGCTGGCCCC
ATCAACATGTAAATGGAGTACATAAGATCAACGGCCATTGGAGCCACATT
ACAGCCCTGATAATCCAGCAGCATGCAGTCCTCGAAGCATCCTGTTTCCT
TATTGTTCTTAAACATCATGTTGCGGGAATGGAAGTCTGCGTGGCAGAGA
ACGTTGTATCCTGGCTGGGGATTGTTTCGATACTCCTGCATAGTCTCTCG
CAATCGGTCCTTAAAATGCAGACTTATTTTCTTAAAATGCGGCTGGTATT
TGCTGAGTTCAGGAATCCGTCCCAACATTTCCATAAATGGATCCATGCCT
CCGCTTATAATGGAACTGTCTATCAGCCCGGGCATTTCACACAATCCGTT
CTTAAACTCCTTCAGATATTCAGGTTGCTCGTGAATAAACTTCATACTGA
TTGCATGGATCTTGGCCAACTTGGAGTAGGCACTGCTGATTTCTTCCCGT
GTAAGGAAACGATCACGCACAACTGCATATCCCATCTCGACGAGATCGTC
GAAGATGAGAATCTGATGTGGCTGTAGACTGTGATAAATGCAC
BS17568.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-PA | 1254 | CG13659-RA | 378..1254 | 893..17 | 4385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1301 | CG13659-RA | 398..1274 | 893..17 | 4385 | 100 | Minus |
CG31370-RB | 1408 | CG31370-RB | 682..976 | 650..356 | 400 | 76.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25301518..25302045 | 729..202 | 2640 | 100 | Minus |
3R | 32079331 | 3R | 25302105..25302290 | 202..17 | 930 | 100 | Minus |
3R | 32079331 | 3R | 25301288..25301453 | 893..728 | 830 | 100 | Minus |
3R | 32079331 | 3R | 25303208..25303502 | 650..356 | 395 | 75.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:10:29 has no hits.
BS17568.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:38 Download gff for
BS17568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-PA | 378..1254 | 17..893 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:28:37 Download gff for
BS17568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 398..1283 | 9..893 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:26 Download gff for
BS17568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 398..1283 | 9..893 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:26 Download gff for
BS17568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25301288..25301453 | 728..893 | 100 | -> | Minus |
3R | 25301520..25302045 | 202..727 | 100 | -> | Minus |
3R | 25302106..25302299 | 9..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:28:37 Download gff for
BS17568.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21127010..21127175 | 728..893 | 100 | -> | Minus |
arm_3R | 21127242..21127767 | 202..727 | 100 | -> | Minus |
arm_3R | 21127828..21128021 | 9..201 | 98 | | Minus |
BS17568.5prime Sequence
807 bp (797 high quality bases) assembled on 2007-05-15
> BS17568.5prime
GAAGTTATCAGTCGACATGGCCGAGGAAAGTTTCAATGACGACGAGTTGA
ATCCTCCGGAGTGGCTAAACGTTCAGTTCATGACTCAGGTGTTGAGGGGT
TACGAAAAAGATTCAAATCTTAAGGTCATCAACTTGAGTTTCACCCCGGC
CAGCGCCAAGGGCGATCACTATGCCAGCATTATGTTTCGCGCTAGGGTGG
AATATACGGCCCAGAACGGTAACTTCACCAAGTCGCTTATCATAAAAACG
ATGATCGTGGAGGAGGGTATCAAAAAGGATATGTTTAAAGATTCTCCACT
ATTTACAACTGAGATCGGAATGTACACTAAGGTCCTGCCCGAGTGGGAGA
GGATTCTTCGGAGAGCAAACGATCCAGCCAAGCTATATGTGGAGTGCATT
TATCACAGTCTACAGCCACATCAGATTCTCATCTTCGACGATCTCGTCGA
GATGGGATATGCAGTTGTGCGTGATCGTTTCCTTACACGGGAAGAAATCA
GCAGTGCCTACTCCAAGTTGGCCAAGATCCATGCAATCAGTATGAAGTTT
ATTCACGAGCAACCTGAATATCTGAAGGAGTTTAAGAACGGATTGTGTGA
AATGCCCGGGCTGATAGACAGTTCCATTATAAGCGGAGGCATGGATCCAT
TTATGGAAATGTTGGGACGGATTCCTGAACTCAGCAAATACCAGCCGCAT
TTTAAGAAAATAAGTCTGCATTTTAAGGACCGATTGCGAGAGACTATGCA
GGAGTATCGAAAACATCCCCAGCCAGGATACAACGTTCTCTGCCACGCAG
ACTTCCA
BS17568.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-PA | 1254 | CG13659-RA | 1..791 | 17..807 | 3880 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:36:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-RA | 1301 | CG13659-RA | 21..811 | 17..807 | 3910 | 99.6 | Plus |
CG31436-RA | 1402 | CG31436-RA | 195..529 | 122..456 | 310 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:35:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25300911..25301453 | 17..559 | 2700 | 99.8 | Plus |
3R | 32079331 | 3R | 25301518..25301767 | 558..807 | 1220 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:35:59 has no hits.
BS17568.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:36 Download gff for
BS17568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-PA | 1..790 | 17..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:50:23 Download gff for
BS17568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 15..810 | 11..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:09:47 Download gff for
BS17568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13659-RA | 15..810 | 11..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:09:47 Download gff for
BS17568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25300905..25301453 | 11..559 | 99 | -> | Plus |
3R | 25301520..25301766 | 560..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:50:23 Download gff for
BS17568.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21126627..21127175 | 11..559 | 99 | -> | Plus |
arm_3R | 21127242..21127488 | 560..806 | 99 | | Plus |
BS17568.pep Sequence
Translation from 16 to 1269
> BS17568.pep
MAEESFNDDELNPPEWLNVQFMTQVLRGYEKDSNLKVINLSFTPASAKGD
HYASIMFRARVEYTAQNGNFTKSLIIKTMIVEEGIKKDMFKDSPLFTTEI
GMYTKVLPEWERILRRANDPAKLYVECIYHSLQPHQILIFDDLVEMGYAV
VRDRFLTREEISSAYSKLAKIHAISMKFIHEQPEYLKEFKNGLCEMPGLI
DSSIISGGMDPFMEMLGRIPELSKYQPHFKKISLHFKDRLRETMQEYRNN
PQPGYNVLCHADFHSRNMMFKNNKETGCFEDCMLLDYQGCNVAPMAVDLM
YSIYMLMGPAQRREELDILLNYYLSILLETLKKIGYQGSMPTEQGFWAEM
KRHRYYEFLLLSTFLPVSIGLRTHKLDIGDMMHNEETRKKLYQLEDFMEE
TKSILDRFQKSGYFDDF*
BS17568.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13659-PA | 417 | CG13659-PA | 1..417 | 1..417 | 2204 | 100 | Plus |
CG31370-PB | 396 | CG31370-PB | 1..395 | 1..416 | 1280 | 60.6 | Plus |
CG31300-PA | 422 | CG31300-PA | 8..419 | 4..414 | 1173 | 52.7 | Plus |
CG11893-PA | 416 | CG11893-PA | 8..415 | 4..416 | 1162 | 51.4 | Plus |
CG31436-PA | 420 | CG31436-PA | 10..416 | 6..412 | 1153 | 54.2 | Plus |