Clone Sequence Records
BS17569.complete Sequence
1349 bp assembled on 2009-12-07
GenBank Submission: KX803981
> BS17569.complete
GAAGTTATCAGTCGACATGACACTGACCCATGGAATTGCCGTGGGATGGC
TGTCTCCCTCTCTTCGACTGCTCGCATCCGACGAAAGCCCTTTGGGGGAT
CCCCTGACCATTACCCAGGCATCCTGGGTTGGATCACTTATCGGCCTAGG
CTCGCTGACCGGCAATATAATCTTTGGACTGCTACTCGATCGATTGGGCC
GTAAAGTGTGCATGTATTTCCTGGCCATACCCAATATGATCTACTGGATC
CTTATCTACTCCGCCCAAGACGTTACGTATCTGTATGCTGGTCGATTCCT
GGCGGGAATGTCCGGAGGTGGCTGTTACGTCGTCTTGCCCATATTCATAG
CTGAAATAGCCGACAATAGCGTTCGGGGAGCGTTATCGTCCATGGCCATG
ATGTACGTTAGCATCGGCATGATGGTTGGCTTTACATTAGCCTCGTATCT
CCCGTACTATCTGATGCCGTGCATTATCGTTGCTCTGCCGGTGGTGTTTA
TGTTGTCAGTTATTGGCTTATCGGAGACACCGCAATATTTGTTGAGACGA
GGGCGCGATGACCAGGCCGAGAAGTCTTTCTACTTCTACAAGAACCTGAC
ACCACCCACTTCCTCCGACAAGGAAGCTTCTCAGCATGACGCAGCTAAAA
TTGAGTTTGACACATTTCGGCTTCAGGTGCTCAGTGGCGGCGTCACCGAG
AGCATTTCTTGGCGGGATTTCATTAACGTGCCTACACTAAAGATATTCGG
CCTCATCTTTGTACTGATCATCTGCAATCAGCTGTCAGGGAGCTTCGCCA
TCTTCAACTACACATCGCACATTTTTGCTGAGCTAGGCAACAATCTGGAT
CCAAACACCAGCACCATTGTGGTCGGAGCTGCACAGCTGGTGGGAATCTT
CAGTGCTGTCGTCCTAGTGGACAGACTGGGTCGTCGTGTTCTGCTCCTCA
CCTCAATGGGTGGAATGGGTTTGGGTGAGCTGGCAATTGCTCTGCTCAAG
TGCTTCGCATCGGATGAGTTTCTGAACCAGAATGGATGGCTTCCTTTGGT
GATCATGTGCCTTGTGGCCTGCATTGCTTCACTAGGAGTTATAGCCCTGA
TCTTCATCATCATTATTGAGCTGCTCCCAGCTAAGATCCGCTCCATTGGC
ACCTCCTTGAGCATGGCCACATTTAGCGGATTTATCTTCGTGGCTCTAAA
GATCTACCCCACAATGATCTACGATCAGGGCCTGGCTGCCACCATGTTCA
TGTCGGCGGGCATGTGCCTATTCGGATTCATTGTCTTGGGACTGTTTCTG
CCAGAGACCAAAGGAAAGCTGATGACGCACTGAAAGCTTTCTAGACCAT
BS17569.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1317 | CG14606-PB | 1..1317 | 17..1333 | 6585 | 100 | Plus |
CG14606-RA | 1317 | CG14606-PA | 1..1317 | 17..1333 | 6585 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1863 | CG14606-RB | 150..1466 | 17..1333 | 6585 | 100 | Plus |
CG14606-RA | 1925 | CG14606-RA | 212..1528 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7215029..7215441 | 1135..723 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 7215505..7215859 | 722..368 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 7214736..7214935 | 1333..1134 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 7216383..7216514 | 369..238 | 660 | 100 | Minus |
3R | 32079331 | 3R | 7216592..7216704 | 238..126 | 565 | 100 | Minus |
3R | 32079331 | 3R | 7216762..7216872 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:44:38 has no hits.
BS17569.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:38 Download gff for
BS17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:10 Download gff for
BS17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 1..1316 | 17..1332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:29 Download gff for
BS17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1527 | 17..1332 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:38 Download gff for
BS17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 1..1317 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:47 Download gff for
BS17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1527 | 17..1332 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:47 Download gff for
BS17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7214737..7214933 | 1136..1332 | 100 | <- | Minus |
3R | 7215029..7215441 | 723..1135 | 100 | <- | Minus |
3R | 7215505..7215857 | 370..722 | 100 | <- | Minus |
3R | 7216383..7216513 | 239..369 | 100 | <- | Minus |
3R | 7216592..7216703 | 127..238 | 100 | <- | Minus |
3R | 7216763..7216872 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:29 Download gff for
BS17569.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3040459..3040655 | 1136..1332 | 100 | <- | Minus |
arm_3R | 3040751..3041163 | 723..1135 | 100 | <- | Minus |
arm_3R | 3041227..3041579 | 370..722 | 100 | <- | Minus |
arm_3R | 3042105..3042235 | 239..369 | 100 | <- | Minus |
arm_3R | 3042314..3042425 | 127..238 | 100 | <- | Minus |
arm_3R | 3042485..3042594 | 17..126 | 100 | | Minus |
BS17569.3prime Sequence
828 bp (761 high quality bases) assembled on 2007-05-15
> BS17569.3prime
ATGGTCTAGAAAGCTTTCAGTGCGTCATCAGCTTTCCTTTGGTCTCTGGC
AGAAACAGTCCCAAGACAATGAATCCGAATAGGCACATGCCCGCCGACAT
GAACATGGTGGCAGCCAGGCCCTGATCGTAGATCATTGTGGGGTAGATCT
TTAGAGCCACGAAGATAAATCCGCTAAATGTGGCCATGCTCAAGGAGGTG
CCAATGGAGCGGATCTTAGCTGGGAGCAGCTCAATAATGATGATGAAGAT
CAGGGCTATAACTCCTAGTGAAGCAATGCAGGCCACAAGGCACATGATCA
CCAAAGGAAGCCATCCATTCTGGTTCAGAAACTCATCCGATGCGAAGCAC
TTGAGCAGAGCAATTGCCAGCTCACCCAAACCCATTCCACCCATTGAGGT
GAGGAGCAGAACACGACGACCCAGTCTGTCCACTAGGACGACAGCACTGA
AGATTCCCACCAGCTGTGCAGCTCCGACCACAATGGTGCTGGTGTTTGGA
TCCAGATTGTTGCCTAGCTCAGCAAAAATGTGCGATGTGTAGTTGAAGAT
GGCGAAGCTCCCTGACAGCTGATTGCAGATGATCAGTACAAAGATGAGGC
CGAATATCTTTAGTGTAGGCACGTTAATGAAATCCCGCCAAGAAATGCTC
TCGGTGACGCCGCCACTGAGCACCTGAAGCCGAAATGTGTCAAACTCAAT
TTTAGCTGCGTCATGCTGAGAAGCTTCCTTGTCGGAGGAAGTGGGTGGTG
TCAGGTTCTTGTAGAAGTAGAAAGACTTCTCGGCCTGGTCATCGCGCCCT
CGTCTCAACAAATATTGCGGTGTCTCCG
BS17569.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-PA | 1317 | CG14606-RA | 506..1317 | 828..17 | 4060 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1863 | CG14606-RB | 655..1466 | 828..17 | 4060 | 100 | Minus |
CG14606-RA | 1925 | CG14606-RA | 717..1528 | 828..17 | 4060 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7215029..7215441 | 215..627 | 2065 | 100 | Plus |
3R | 32079331 | 3R | 7215505..7215705 | 628..828 | 1005 | 100 | Plus |
3R | 32079331 | 3R | 7214736..7214935 | 17..216 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:06:29 has no hits.
BS17569.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:48 Download gff for
BS17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-PA | 506..1317 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:53:16 Download gff for
BS17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 717..1528 | 17..828 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:38:28 Download gff for
BS17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 717..1528 | 17..828 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:38:28 Download gff for
BS17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7214736..7214933 | 17..214 | 100 | <- | Plus |
3R | 7215029..7215441 | 215..627 | 100 | <- | Plus |
3R | 7215505..7215705 | 628..828 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:53:16 Download gff for
BS17569.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3040458..3040655 | 17..214 | 100 | <- | Plus |
arm_3R | 3040751..3041163 | 215..627 | 100 | <- | Plus |
arm_3R | 3041227..3041427 | 628..828 | 100 | | Plus |
BS17569.5prime Sequence
897 bp (771 high quality bases) assembled on 2007-05-15
> BS17569.5prime
GAAGTTATCAGTCGACATGACACTGACCCATGGAATTGCCGTGGGATGGC
TGTCTCCCTCTCTTCGACTGCTCGCATCCGACGAAAGCCCTTTGGGGGAT
CCCCTGACCATTACCCAGGCATCCTGGGTTGGATCACTTATCGGCCTAGG
CTCGCTGACCGGCAATATAATCTTTGGACTGCTACTCGATCGATTGGGCC
GTAAAGTGTGCATGTATTTCCTGGCCATACCCAATATGATCTACTGGATC
CTTATCTACTCCGCCCAAGACGTTACGTATCTGTATGCTGGTCGATTCCT
GGCGGGAATGTCCGGAGGTGGCTGTTACGTCGTCTTGCCCATATTCATAG
CTGAAATAGCCGACAATAGCGTTCGGGGAGCGTTATCGTCCATGGCCATG
ATGTACGTTAGCATCGGCATGATGGTTGGCTTTACATTAGCCTCGTATCT
CCCGTACTATCTGATGCCGTGCATTATCGTTGCTCTGCCGGTGGTGTTTA
TGTTGTCAGTTATTGGCTTATCGGAGACACCGCAATATTTGTTGAGACGA
GGGCGCGATGACCAGGCCGAGAAGTCTTTCTACTTCTACAAGAACCTGAC
ACCACCCACTTCCTCCGACAAGGAAGCTTCTCAGCATGACGCAGCTAAAA
TTGAGTTTGACACATTTCGGCTTCAGGTGCTCAGTGGCGGCGTCACCGAG
AGCATTTCTTGGCGGGATTTCATTAACGTGCCTACACTAAAGATATTCGG
CCTCATCTTTGTACTGATCATCTGNCATCAGCTGTCAGGGAGCTTCGCCA
TCTTCAACTACACATCGCACATTTTTGCTGAGCTAGGCAACAATCTGGAT
CCAAACACCCAGCACATTGTGGTCGGAGCTGCACAGCTGGTGGGAAT
BS17569.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-PA | 1317 | CG14606-RA | 1..843 | 17..859 | 4171 | 99.7 | Plus |
CG14606-PA | 1317 | CG14606-RA | 849..881 | 865..897 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-RB | 1863 | CG14606-RB | 150..1030 | 17..897 | 4334 | 99.5 | Plus |
CG14606-RA | 1925 | CG14606-RA | 212..1092 | 17..897 | 4334 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:47:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7215505..7215859 | 722..368 | 1775 | 100 | Minus |
3R | 32079331 | 3R | 7215267..7215441 | 897..723 | 774 | 96 | Minus |
3R | 32079331 | 3R | 7216383..7216514 | 369..238 | 660 | 100 | Minus |
3R | 32079331 | 3R | 7216592..7216704 | 238..126 | 565 | 100 | Minus |
3R | 32079331 | 3R | 7216762..7216872 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:47:39 has no hits.
BS17569.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:45 Download gff for
BS17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:26:51 Download gff for
BS17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1092 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:58 Download gff for
BS17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14606-RA | 212..1092 | 17..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:58 Download gff for
BS17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7215267..7215441 | 723..897 | 97 | <- | Minus |
3R | 7215505..7215857 | 370..722 | 100 | <- | Minus |
3R | 7216383..7216513 | 239..369 | 100 | <- | Minus |
3R | 7216592..7216703 | 127..238 | 100 | <- | Minus |
3R | 7216763..7216872 | 17..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:26:51 Download gff for
BS17569.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3041227..3041579 | 370..722 | 100 | <- | Minus |
arm_3R | 3040989..3041163 | 723..897 | 97 | <- | Minus |
arm_3R | 3042105..3042235 | 239..369 | 100 | <- | Minus |
arm_3R | 3042314..3042425 | 127..238 | 100 | <- | Minus |
arm_3R | 3042485..3042594 | 17..126 | 100 | | Minus |
BS17569.pep Sequence
Translation from 16 to 1332
> BS17569.pep
MTLTHGIAVGWLSPSLRLLASDESPLGDPLTITQASWVGSLIGLGSLTGN
IIFGLLLDRLGRKVCMYFLAIPNMIYWILIYSAQDVTYLYAGRFLAGMSG
GGCYVVLPIFIAEIADNSVRGALSSMAMMYVSIGMMVGFTLASYLPYYLM
PCIIVALPVVFMLSVIGLSETPQYLLRRGRDDQAEKSFYFYKNLTPPTSS
DKEASQHDAAKIEFDTFRLQVLSGGVTESISWRDFINVPTLKIFGLIFVL
IICNQLSGSFAIFNYTSHIFAELGNNLDPNTSTIVVGAAQLVGIFSAVVL
VDRLGRRVLLLTSMGGMGLGELAIALLKCFASDEFLNQNGWLPLVIMCLV
ACIASLGVIALIFIIIIELLPAKIRSIGTSLSMATFSGFIFVALKIYPTM
IYDQGLAATMFMSAGMCLFGFIVLGLFLPETKGKLMTH*
BS17569.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14606-PB | 438 | CG14606-PB | 1..438 | 1..438 | 2220 | 100 | Plus |
CG14606-PA | 438 | CG14606-PA | 1..438 | 1..438 | 2220 | 100 | Plus |
CG14605-PD | 432 | CG14605-PD | 1..431 | 1..437 | 1139 | 49.7 | Plus |
CG14605-PB | 432 | CG14605-PB | 1..431 | 1..437 | 1139 | 49.7 | Plus |
CG33282-PB | 460 | CG33282-PB | 27..457 | 1..436 | 932 | 41.8 | Plus |