Clone Sequence Records
BS17570.complete Sequence
1295 bp assembled on 2009-12-07
GenBank Submission: KX805599
> BS17570.complete
GAAGTTATCAGTCGACATGACTGAGAAATCTACCCACAAAGTTCACCCAG
CGCCAGTTTGGCTCACCTCGGAATATGTGCAGGATAAGTTGCGCACCTAC
TTCAAGGATAGCTCACTGAAGCTGGCGACGTTGGATACAAAGCCAGCCGT
GGCCAATGGAGGAAACTACGGCAGCGTGATGACCCGCATCAATGTGGAGT
ACACGACCAAGGTATCGAAAGGGAAACAGTCCACCACATTTCTGGTTAAG
ACCACATTCGCTGACCGGGATCCAGCCGGCGATGTGCTCATCCACTATGG
TGTCTACACCCGTGAAATGGATATATACGAGCACATCCTTCCCCAGCTGG
CGGATATGGTGAGGAAGGAGCTTAAAGACTCCAGGAAGCTCTTTGCGGCC
ACCATGAATGTGGACCGCGAAAGGGACTCGATCATCTTCGAGGACATGTC
ACTGGATCATTACAAGGTTGCATGCCGTCGAAAGAAGCTGGACCTAGAAC
ACACCCACCTGGTACTGGAGAAACTGGCCCTCTTTCATGCAGCTTCATCA
GTTCTCGCCGAGCGACAGCCGGGTATCTTCGACAAGAACTATGATCGTGG
CTTTTTCAACAAACACACCCGGGCATACGCCCCGATCATGACCAATCTTC
TGGAGGCTCTGTCCCGCTCCCTTGCTTCGGATGAGGAGTTGGGACAGCGG
TACAAGGCCAAGATCGACAGGCTTGTGGAACGTTTGATGGACTATGGCGA
AAGATCGACGACTAGTAGTCCTGGCGACTTTTTAACTCTGGCCCATGGAG
ATCTTTGGACCACCAACTTTATGTTCCAGTACGATGCAAAAGAGCATCCC
ACGAATGCCATCTTCATTGACTTCCAGTTCAGCGTGTGGAACTCGCCGGC
CATCGATCTCCACTACTTCTTCTCCACCTCGTTGCAGGATAATCTTCGCT
TGGAACATCAAACAGAATTGGTTCAGTTTTATTACTATAGGCTGACGGAG
GCCCTAAGGAAGTTAAAATATGCTGGTCGGATACCCAGCTTGTTCGACTT
CCAACTGCAGTTCCGCTCGAGAGGATTCTATGCCGTATTCTGTTCCTTGA
TTTTTGAGCCTGTCATGCAGTACGAGGGCAAAGAGGATGCTTCTATTGAG
CAGGTCCTATCCAGTTCCGAGAGTGGAATGCGATTCAAGAACTCAGTTTA
TGAATCGGAAAATATAAAAAAGAAATTAAGTGTCACACTGCCTTTTCTGG
ATCAGTTTGGATTGCTGGATGACATGTAAAAGCTTTCTAGACCAT
BS17570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11878-RA | 1263 | CG11878-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG11889-RB | 1254 | CG11889-PB | 130..1085 | 155..1110 | 940 | 73.2 | Plus |
CG11889-RA | 1254 | CG11889-PA | 130..1085 | 155..1110 | 940 | 73.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11878-RA | 1345 | CG11878-RA | 11..1274 | 16..1279 | 6320 | 100 | Plus |
CG11891-RD | 2922 | CG11891-RD | 130..1085 | 155..1110 | 940 | 73.2 | Plus |
CG11889-RB | 1317 | CG11889-RB | 152..1107 | 155..1110 | 940 | 73.2 | Plus |
CG11891-RD | 2922 | CG11891-RD | 1856..2509 | 295..948 | 780 | 74.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25273847..25274913 | 16..1082 | 5335 | 100 | Plus |
3R | 32079331 | 3R | 25274969..25275166 | 1082..1279 | 990 | 100 | Plus |
3R | 32079331 | 3R | 25270360..25271194 | 155..989 | 920 | 74 | Plus |
3R | 32079331 | 3R | 25272144..25272797 | 295..948 | 780 | 74.6 | Plus |
3R | 32079331 | 3R | 25268987..25269693 | 356..1062 | 655 | 72.8 | Plus |
3R | 32079331 | 3R | 25268042..25268216 | 835..1007 | 195 | 75.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:44:28 has no hits.
BS17570.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:40 Download gff for
BS17570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 1..1263 | 17..1279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:09 Download gff for
BS17570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 12..1272 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:25 Download gff for
BS17570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 12..1272 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:40 Download gff for
BS17570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 4..1274 | 7..1279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:44 Download gff for
BS17570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 12..1272 | 17..1277 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:44 Download gff for
BS17570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25273848..25274913 | 17..1082 | 100 | -> | Plus |
3R | 25274970..25275164 | 1083..1277 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:25 Download gff for
BS17570.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21099570..21100635 | 17..1082 | 100 | -> | Plus |
arm_3R | 21100692..21100886 | 1083..1277 | 100 | | Plus |
BS17570.3prime Sequence
898 bp (757 high quality bases) assembled on 2007-05-15
> BS17570.3prime
ATGGTCTAGAAAGCTTTTACATGTCATCCAGCAATCCAAACTGATCCAGA
AAAGGCAGTGTGACACTTAATTTCTTTTTTATATTTTCCGATTCATAAAC
TGAGTTCTTGAATCGCATTCCACTCTCGGAACTGGATAGGACCTGCTCAA
TAGAAGCATCCTCTTTGCCCTCGTACTGCATGACAGGCTCAAAAATCAAG
GAACAGAATACGGCATAGAATCCTCTCGAGCGGAACTGCAGTTGGAAGTC
GAACAAGCTGGGTATCCGACCAGCATATTTTAACTTCCTTAGGGCCTCCG
TCAGCCTATAGTAATAAAACTGAACCAATTCTGTTTGATGTTCCAAGCGA
AGATTATCCTGCAACGAGGTGGAGAAGAAGTAGTGGAGATCGATGGCCGG
CGAGTTCCACACGCTGAACTGGAAGTCAATGAAGATGGCATTCGTGGGAT
GCTCTTTTGCATCGTACTGGAACATAAAGTTGGTGGTCCAAAGATCTCCA
TGGGCCAGAGTTAAAAAGTCGCCAGGACTACTAGTCGTCGATCTTTCGCC
ATAGTCCATCAAACGTTCCACAAGCCTGTCGATCTTGGCCTTGTACCGCT
GTCCCAACTCCTCATCCGAAGCAAGGGAGCGGGACAGAGCCTCCAGAAGA
TTGGTCATGATCGGGGCGTATGCCCGGGTGTGTTTGTTGAAAAAGCCACG
ATCATAGTTCTTGTCGAAGATACCCGGCTGTCGCTCGGCGAGAACTGATG
AAGCTGCATGAAAGAGGGCCAGTTTCTCCAGTACCAGGTGGGTGTGTTCT
AGGTCCAGCTTCTTTCGACGGCATGCAACCTTGTAATGATCCAGTGACAT
GTCCTCGAAGATGATCGAGTCCCTTTCGCGGTCCACATTCATGGTGGC
BS17570.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11878-PA | 1263 | CG11878-RA | 382..1263 | 898..17 | 4410 | 100 | Minus |
CG11889-PA | 1254 | CG11889-RA | 829..906 | 442..365 | 190 | 89.7 | Minus |
CG13656-PA | 1101 | CG13656-RA | 697..749 | 421..369 | 165 | 92.4 | Minus |
CG11891-PA | 1080 | CG11891-RA | 688..722 | 409..375 | 150 | 97.1 | Minus |
CG11891-PB | 1080 | CG11891-RB | 688..722 | 409..375 | 150 | 97.1 | Minus |
CG11891-PC | 1224 | CG11891-RC | 832..866 | 409..375 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:41:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11878-RA | 1345 | CG11878-RA | 393..1274 | 898..17 | 4410 | 100 | Minus |
CG11891-RE | 1337 | CG11891-RE | 399..924 | 873..348 | 685 | 76 | Minus |
CG11891-RD | 2922 | CG11891-RD | 1984..2509 | 873..348 | 685 | 76 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:40:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25274229..25274913 | 898..214 | 3425 | 100 | Minus |
3R | 32079331 | 3R | 25274969..25275166 | 214..17 | 990 | 100 | Minus |
3R | 32079331 | 3R | 25272272..25272797 | 873..348 | 680 | 75.3 | Minus |
3R | 32079331 | 3R | 25269038..25269693 | 889..234 | 625 | 73 | Minus |
3R | 32079331 | 3R | 25270628..25271194 | 873..307 | 615 | 73.9 | Minus |
3R | 32079331 | 3R | 25268042..25268216 | 461..289 | 195 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:41:00 has no hits.
BS17570.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:54 Download gff for
BS17570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-PA | 382..1263 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:18 Download gff for
BS17570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 393..1274 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:36 Download gff for
BS17570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 393..1274 | 17..898 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:36 Download gff for
BS17570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25274229..25274913 | 214..898 | 100 | -> | Minus |
3R | 25274970..25275166 | 17..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:18 Download gff for
BS17570.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21099951..21100635 | 214..898 | 100 | -> | Minus |
arm_3R | 21100692..21100888 | 17..213 | 100 | | Minus |
BS17570.5prime Sequence
835 bp (830 high quality bases) assembled on 2007-05-15
> BS17570.5prime
GAAGTTATCAGTCGACATGACTGAGAAATCTACCCACAAAGTTCACCCAG
CGCCAGTTTGGCTCACCTCGGAATATGTGCAGGATAAGTTGCGCACCTAC
TTCAAGGATAGCTCACTGAAGCTGGCGACGTTGGATACAAAGCCAGCCGT
GGCCAATGGAGGAAACTACGGCAGCGTGATGACCCGCATCAATGTGGAGT
ACACGACCAAGGTATCGAAAGGGAAACAGTCCACCACATTTCTGGTTAAG
ACCACATTCGCTGACCGGGATCCAGCCGGCGATGTGCTCATCCACTATGG
TGTCTACACCCGTGAAATGGATATATACGAGCACATCCTTCCCCAGCTGG
CGGATATGGTGAGGAAGGAGCTTAAAGACTCCAGGAAGCTCTTTGCGGCC
ACCATGAATGTGGACCGCGAAAGGGACTCGATCATCTTCGAGGACATGTC
ACTGGATCATTACAAGGTTGCATGCCGTCGAAAGAAGCTGGACCTAGAAC
ACACCCACCTGGTACTGGAGAAACTGGCCCTCTTTCATGCAGCTTCATCA
GTTCTCGCCGAGCGACAGCCGGGTATCTTCGACAAGAACTATGATCGTGG
CTTTTTCAACAAACACACCCGGGCATACGCCCCGATCATGACCAATCTTC
TGGAGGCTCTGTCCCGCTCCCTTGCTTCGGATGAGGAGTTGGGACAGCGG
TACAAGGCCAAGATCGACAGGCTTGTGGAACGTTTGATGGACTATGGCGA
AAGATCGACGACTAGTAGTCCTGGCGACTTTTTAACTCTGGCCCATGGAG
ATCTTTGGACCACCAACTTTATGTTCCAGTACGAT
BS17570.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11878-PA | 1263 | CG11878-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG11889-PA | 1254 | CG11889-RA | 139..178 | 164..203 | 150 | 95 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11878-RA | 1345 | CG11878-RA | 11..830 | 16..835 | 4100 | 100 | Plus |
CG11891-RD | 2922 | CG11891-RD | 130..810 | 155..835 | 675 | 73.8 | Plus |
CG11889-RB | 1317 | CG11889-RB | 152..832 | 155..835 | 675 | 73.8 | Plus |
CG11891-RD | 2922 | CG11891-RD | 1856..2395 | 295..834 | 545 | 74.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25273847..25274666 | 16..835 | 4100 | 100 | Plus |
3R | 32079331 | 3R | 25270360..25271040 | 155..835 | 660 | 73.1 | Plus |
3R | 32079331 | 3R | 25272144..25272683 | 295..834 | 540 | 73.3 | Plus |
3R | 32079331 | 3R | 25268987..25269246 | 356..615 | 370 | 76.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:14:22 has no hits.
BS17570.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:38 Download gff for
BS17570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-PA | 1..819 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:31 Download gff for
BS17570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 4..830 | 7..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:23 Download gff for
BS17570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11878-RA | 4..830 | 7..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:23 Download gff for
BS17570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25273840..25274666 | 7..835 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:31 Download gff for
BS17570.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21099562..21100388 | 7..835 | 99 | | Plus |
BS17570.pep Sequence
Translation from 16 to 1278
> BS17570.pep
MTEKSTHKVHPAPVWLTSEYVQDKLRTYFKDSSLKLATLDTKPAVANGGN
YGSVMTRINVEYTTKVSKGKQSTTFLVKTTFADRDPAGDVLIHYGVYTRE
MDIYEHILPQLADMVRKELKDSRKLFAATMNVDRERDSIIFEDMSLDHYK
VACRRKKLDLEHTHLVLEKLALFHAASSVLAERQPGIFDKNYDRGFFNKH
TRAYAPIMTNLLEALSRSLASDEELGQRYKAKIDRLVERLMDYGERSTTS
SPGDFLTLAHGDLWTTNFMFQYDAKEHPTNAIFIDFQFSVWNSPAIDLHY
FFSTSLQDNLRLEHQTELVQFYYYRLTEALRKLKYAGRIPSLFDFQLQFR
SRGFYAVFCSLIFEPVMQYEGKEDASIEQVLSSSESGMRFKNSVYESENI
KKKLSVTLPFLDQFGLLDDM*
BS17570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11878-PA | 420 | CG11878-PA | 1..420 | 1..420 | 2175 | 100 | Plus |
CG11889-PB | 417 | CG11889-PB | 1..417 | 1..420 | 1549 | 69 | Plus |
CG11889-PA | 417 | CG11889-PA | 1..417 | 1..420 | 1549 | 69 | Plus |
CG11891-PE | 420 | CG11891-PE | 1..420 | 1..420 | 1480 | 67.1 | Plus |
CG11891-PD | 420 | CG11891-PD | 1..420 | 1..420 | 1480 | 67.1 | Plus |