Clone BS17570 Report

Search the DGRC for BS17570

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptCG11878-RA
Protein status:BS17570.pep: full length peptide match
Sequenced Size:1295

Clone Sequence Records

BS17570.complete Sequence

1295 bp assembled on 2009-12-07

GenBank Submission: KX805599

> BS17570.complete
GAAGTTATCAGTCGACATGACTGAGAAATCTACCCACAAAGTTCACCCAG
CGCCAGTTTGGCTCACCTCGGAATATGTGCAGGATAAGTTGCGCACCTAC
TTCAAGGATAGCTCACTGAAGCTGGCGACGTTGGATACAAAGCCAGCCGT
GGCCAATGGAGGAAACTACGGCAGCGTGATGACCCGCATCAATGTGGAGT
ACACGACCAAGGTATCGAAAGGGAAACAGTCCACCACATTTCTGGTTAAG
ACCACATTCGCTGACCGGGATCCAGCCGGCGATGTGCTCATCCACTATGG
TGTCTACACCCGTGAAATGGATATATACGAGCACATCCTTCCCCAGCTGG
CGGATATGGTGAGGAAGGAGCTTAAAGACTCCAGGAAGCTCTTTGCGGCC
ACCATGAATGTGGACCGCGAAAGGGACTCGATCATCTTCGAGGACATGTC
ACTGGATCATTACAAGGTTGCATGCCGTCGAAAGAAGCTGGACCTAGAAC
ACACCCACCTGGTACTGGAGAAACTGGCCCTCTTTCATGCAGCTTCATCA
GTTCTCGCCGAGCGACAGCCGGGTATCTTCGACAAGAACTATGATCGTGG
CTTTTTCAACAAACACACCCGGGCATACGCCCCGATCATGACCAATCTTC
TGGAGGCTCTGTCCCGCTCCCTTGCTTCGGATGAGGAGTTGGGACAGCGG
TACAAGGCCAAGATCGACAGGCTTGTGGAACGTTTGATGGACTATGGCGA
AAGATCGACGACTAGTAGTCCTGGCGACTTTTTAACTCTGGCCCATGGAG
ATCTTTGGACCACCAACTTTATGTTCCAGTACGATGCAAAAGAGCATCCC
ACGAATGCCATCTTCATTGACTTCCAGTTCAGCGTGTGGAACTCGCCGGC
CATCGATCTCCACTACTTCTTCTCCACCTCGTTGCAGGATAATCTTCGCT
TGGAACATCAAACAGAATTGGTTCAGTTTTATTACTATAGGCTGACGGAG
GCCCTAAGGAAGTTAAAATATGCTGGTCGGATACCCAGCTTGTTCGACTT
CCAACTGCAGTTCCGCTCGAGAGGATTCTATGCCGTATTCTGTTCCTTGA
TTTTTGAGCCTGTCATGCAGTACGAGGGCAAAGAGGATGCTTCTATTGAG
CAGGTCCTATCCAGTTCCGAGAGTGGAATGCGATTCAAGAACTCAGTTTA
TGAATCGGAAAATATAAAAAAGAAATTAAGTGTCACACTGCCTTTTCTGG
ATCAGTTTGGATTGCTGGATGACATGTAAAAGCTTTCTAGACCAT

BS17570.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG11878-RA 1263 CG11878-PA 1..1263 17..1279 6315 100 Plus
CG11889-RB 1254 CG11889-PB 130..1085 155..1110 940 73.2 Plus
CG11889-RA 1254 CG11889-PA 130..1085 155..1110 940 73.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG11878-RA 1345 CG11878-RA 11..1274 16..1279 6320 100 Plus
CG11891-RD 2922 CG11891-RD 130..1085 155..1110 940 73.2 Plus
CG11889-RB 1317 CG11889-RB 152..1107 155..1110 940 73.2 Plus
CG11891-RD 2922 CG11891-RD 1856..2509 295..948 780 74.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25273847..25274913 16..1082 5335 100 Plus
3R 32079331 3R 25274969..25275166 1082..1279 990 100 Plus
3R 32079331 3R 25270360..25271194 155..989 920 74 Plus
3R 32079331 3R 25272144..25272797 295..948 780 74.6 Plus
3R 32079331 3R 25268987..25269693 356..1062 655 72.8 Plus
3R 32079331 3R 25268042..25268216 835..1007 195 75.4 Plus
Blast to na_te.dros performed on 2014-11-28 01:44:28 has no hits.

BS17570.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:40 Download gff for BS17570.complete
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 1..1263 17..1279 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:09 Download gff for BS17570.complete
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 12..1272 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:25 Download gff for BS17570.complete
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 12..1272 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:40 Download gff for BS17570.complete
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 4..1274 7..1279 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:44 Download gff for BS17570.complete
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 12..1272 17..1277 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:44 Download gff for BS17570.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25273848..25274913 17..1082 100 -> Plus
3R 25274970..25275164 1083..1277 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:25 Download gff for BS17570.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21099570..21100635 17..1082 100 -> Plus
arm_3R 21100692..21100886 1083..1277 100   Plus

BS17570.3prime Sequence

898 bp (757 high quality bases) assembled on 2007-05-15

> BS17570.3prime
ATGGTCTAGAAAGCTTTTACATGTCATCCAGCAATCCAAACTGATCCAGA
AAAGGCAGTGTGACACTTAATTTCTTTTTTATATTTTCCGATTCATAAAC
TGAGTTCTTGAATCGCATTCCACTCTCGGAACTGGATAGGACCTGCTCAA
TAGAAGCATCCTCTTTGCCCTCGTACTGCATGACAGGCTCAAAAATCAAG
GAACAGAATACGGCATAGAATCCTCTCGAGCGGAACTGCAGTTGGAAGTC
GAACAAGCTGGGTATCCGACCAGCATATTTTAACTTCCTTAGGGCCTCCG
TCAGCCTATAGTAATAAAACTGAACCAATTCTGTTTGATGTTCCAAGCGA
AGATTATCCTGCAACGAGGTGGAGAAGAAGTAGTGGAGATCGATGGCCGG
CGAGTTCCACACGCTGAACTGGAAGTCAATGAAGATGGCATTCGTGGGAT
GCTCTTTTGCATCGTACTGGAACATAAAGTTGGTGGTCCAAAGATCTCCA
TGGGCCAGAGTTAAAAAGTCGCCAGGACTACTAGTCGTCGATCTTTCGCC
ATAGTCCATCAAACGTTCCACAAGCCTGTCGATCTTGGCCTTGTACCGCT
GTCCCAACTCCTCATCCGAAGCAAGGGAGCGGGACAGAGCCTCCAGAAGA
TTGGTCATGATCGGGGCGTATGCCCGGGTGTGTTTGTTGAAAAAGCCACG
ATCATAGTTCTTGTCGAAGATACCCGGCTGTCGCTCGGCGAGAACTGATG
AAGCTGCATGAAAGAGGGCCAGTTTCTCCAGTACCAGGTGGGTGTGTTCT
AGGTCCAGCTTCTTTCGACGGCATGCAACCTTGTAATGATCCAGTGACAT
GTCCTCGAAGATGATCGAGTCCCTTTCGCGGTCCACATTCATGGTGGC

BS17570.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11878-PA 1263 CG11878-RA 382..1263 898..17 4410 100 Minus
CG11889-PA 1254 CG11889-RA 829..906 442..365 190 89.7 Minus
CG13656-PA 1101 CG13656-RA 697..749 421..369 165 92.4 Minus
CG11891-PA 1080 CG11891-RA 688..722 409..375 150 97.1 Minus
CG11891-PB 1080 CG11891-RB 688..722 409..375 150 97.1 Minus
CG11891-PC 1224 CG11891-RC 832..866 409..375 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:41:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11878-RA 1345 CG11878-RA 393..1274 898..17 4410 100 Minus
CG11891-RE 1337 CG11891-RE 399..924 873..348 685 76 Minus
CG11891-RD 2922 CG11891-RD 1984..2509 873..348 685 76 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:40:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25274229..25274913 898..214 3425 100 Minus
3R 32079331 3R 25274969..25275166 214..17 990 100 Minus
3R 32079331 3R 25272272..25272797 873..348 680 75.3 Minus
3R 32079331 3R 25269038..25269693 889..234 625 73 Minus
3R 32079331 3R 25270628..25271194 873..307 615 73.9 Minus
3R 32079331 3R 25268042..25268216 461..289 195 75.4 Minus
Blast to na_te.dros performed on 2015-02-11 02:41:00 has no hits.

BS17570.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:52:54 Download gff for BS17570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11878-PA 382..1263 17..898 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 21:01:18 Download gff for BS17570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 393..1274 17..898 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:51:36 Download gff for BS17570.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 393..1274 17..898 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:51:36 Download gff for BS17570.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25274229..25274913 214..898 100 -> Minus
3R 25274970..25275166 17..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 21:01:18 Download gff for BS17570.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21099951..21100635 214..898 100 -> Minus
arm_3R 21100692..21100888 17..213 100   Minus

BS17570.5prime Sequence

835 bp (830 high quality bases) assembled on 2007-05-15

> BS17570.5prime
GAAGTTATCAGTCGACATGACTGAGAAATCTACCCACAAAGTTCACCCAG
CGCCAGTTTGGCTCACCTCGGAATATGTGCAGGATAAGTTGCGCACCTAC
TTCAAGGATAGCTCACTGAAGCTGGCGACGTTGGATACAAAGCCAGCCGT
GGCCAATGGAGGAAACTACGGCAGCGTGATGACCCGCATCAATGTGGAGT
ACACGACCAAGGTATCGAAAGGGAAACAGTCCACCACATTTCTGGTTAAG
ACCACATTCGCTGACCGGGATCCAGCCGGCGATGTGCTCATCCACTATGG
TGTCTACACCCGTGAAATGGATATATACGAGCACATCCTTCCCCAGCTGG
CGGATATGGTGAGGAAGGAGCTTAAAGACTCCAGGAAGCTCTTTGCGGCC
ACCATGAATGTGGACCGCGAAAGGGACTCGATCATCTTCGAGGACATGTC
ACTGGATCATTACAAGGTTGCATGCCGTCGAAAGAAGCTGGACCTAGAAC
ACACCCACCTGGTACTGGAGAAACTGGCCCTCTTTCATGCAGCTTCATCA
GTTCTCGCCGAGCGACAGCCGGGTATCTTCGACAAGAACTATGATCGTGG
CTTTTTCAACAAACACACCCGGGCATACGCCCCGATCATGACCAATCTTC
TGGAGGCTCTGTCCCGCTCCCTTGCTTCGGATGAGGAGTTGGGACAGCGG
TACAAGGCCAAGATCGACAGGCTTGTGGAACGTTTGATGGACTATGGCGA
AAGATCGACGACTAGTAGTCCTGGCGACTTTTTAACTCTGGCCCATGGAG
ATCTTTGGACCACCAACTTTATGTTCCAGTACGAT

BS17570.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG11878-PA 1263 CG11878-RA 1..819 17..835 4095 100 Plus
CG11889-PA 1254 CG11889-RA 139..178 164..203 150 95 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:14:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11878-RA 1345 CG11878-RA 11..830 16..835 4100 100 Plus
CG11891-RD 2922 CG11891-RD 130..810 155..835 675 73.8 Plus
CG11889-RB 1317 CG11889-RB 152..832 155..835 675 73.8 Plus
CG11891-RD 2922 CG11891-RD 1856..2395 295..834 545 74.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25273847..25274666 16..835 4100 100 Plus
3R 32079331 3R 25270360..25271040 155..835 660 73.1 Plus
3R 32079331 3R 25272144..25272683 295..834 540 73.3 Plus
3R 32079331 3R 25268987..25269246 356..615 370 76.2 Plus
Blast to na_te.dros performed on 2015-02-11 16:14:22 has no hits.

BS17570.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:38 Download gff for BS17570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11878-PA 1..819 17..835 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:31 Download gff for BS17570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 4..830 7..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:23 Download gff for BS17570.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11878-RA 4..830 7..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:23 Download gff for BS17570.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25273840..25274666 7..835 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:31 Download gff for BS17570.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21099562..21100388 7..835 99   Plus

BS17570.pep Sequence

Translation from 16 to 1278

> BS17570.pep
MTEKSTHKVHPAPVWLTSEYVQDKLRTYFKDSSLKLATLDTKPAVANGGN
YGSVMTRINVEYTTKVSKGKQSTTFLVKTTFADRDPAGDVLIHYGVYTRE
MDIYEHILPQLADMVRKELKDSRKLFAATMNVDRERDSIIFEDMSLDHYK
VACRRKKLDLEHTHLVLEKLALFHAASSVLAERQPGIFDKNYDRGFFNKH
TRAYAPIMTNLLEALSRSLASDEELGQRYKAKIDRLVERLMDYGERSTTS
SPGDFLTLAHGDLWTTNFMFQYDAKEHPTNAIFIDFQFSVWNSPAIDLHY
FFSTSLQDNLRLEHQTELVQFYYYRLTEALRKLKYAGRIPSLFDFQLQFR
SRGFYAVFCSLIFEPVMQYEGKEDASIEQVLSSSESGMRFKNSVYESENI
KKKLSVTLPFLDQFGLLDDM*

BS17570.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG11878-PA 420 CG11878-PA 1..420 1..420 2175 100 Plus
CG11889-PB 417 CG11889-PB 1..417 1..420 1549 69 Plus
CG11889-PA 417 CG11889-PA 1..417 1..420 1549 69 Plus
CG11891-PE 420 CG11891-PE 1..420 1..420 1480 67.1 Plus
CG11891-PD 420 CG11891-PD 1..420 1..420 1480 67.1 Plus