Clone Sequence Records
BS17571.3prime Sequence
905 bp (891 high quality bases) assembled on 2007-05-15
> BS17571.3prime
ATGGTCTAGAAAGCTTTTACATACTGTTGAGCGTCAACTGAAAATCACGG
ATCAGTTGCATCAAGGCAACCGTGCAACCAACTATGCCGAAAATAAGACC
AATCAGGATAAGTAAGATATCCCGGATCAGCTTCCACATCAGCCGGCCAT
AGCCCACATTATAGTTTAGGAACACATCGATCAATGCCGGACATAGAAGA
TTCAAGTTACTCAACGAAAAAGCGCCTTCCAGTTCCGTGAGAGCCGCTAG
ATTGGGCACACCAATTGCCACGGCACCTGTGAGAAAAAGAAACAGCAATC
GAACTACGTACTCAATTAGCGTGCGATACCTGCCCCTCGGTTCAGAGTTT
TCATAGTCGCTAAACATCACTGTGATCACTACGAAACCATTCAGAGGATA
ACTCAGAAATATTCCAGAGGCAATAAATACCTTAATGAACTGGGAAAGGA
TTTCATCCTGTGGAATATTTAGGGTAATACTGGCATGGACATTGTCTCCG
AAACGCCAATAGCCGATGATTCCAAAAAACATGTTCGAGAGCAGGATGAA
TAAAACAGCAAGATTGAGGACTCCAAAGAGGCCCAGATAGCTCTGCGGAT
GTGCCATATGGGCCTCGACGACGAGCATAGAACCCACGGCTGTGAGGGAA
AAGGCGGCGATGGCTATGAATTCAATCCATTCGACAGGAGGTGTGACCAT
CTCACGATCATTAATATTGGGAAGACCATTGAACAGATAGTACATGATTA
GGGCGAATCCCGCGTATAGCAAGAAGTTGGAGATCAAATTCAAGGGTACC
AAATACTTTAGACGGCGGATCATGAAGAGCGGCAAGAGCAGCAAACAGGC
GACCAGCACATAATACCTTTCATTGTACCTCTCAATATAATGGTCACCGA
TTTCC
BS17571.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12943-PA | 1383 | CG12943-RA | 495..1383 | 905..17 | 4445 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:15:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polyph-RA | 1546 | CG12943-RA | 586..1474 | 905..17 | 4445 | 100 | Minus |
| polyph-RC | 1502 | CG12943-RC | 590..1045 | 905..450 | 2280 | 100 | Minus |
| polyph-RC | 1502 | CG12943-RC | 1046..1430 | 401..17 | 1925 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10904361..10904637 | 905..629 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 10905230..10905491 | 278..17 | 1310 | 100 | Minus |
| 2R | 25286936 | 2R | 10904698..10904876 | 628..450 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 10904998..10905173 | 449..274 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:15:31 has no hits.
BS17571.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:04 Download gff for
BS17571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12943-PA | 495..1383 | 17..905 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:30 Download gff for
BS17571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12943-RA | 586..1477 | 14..905 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:33 Download gff for
BS17571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polyph-RA | 586..1477 | 14..905 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:33 Download gff for
BS17571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10904361..10904637 | 629..905 | 100 | -> | Minus |
| 2R | 10904698..10904876 | 450..628 | 100 | -> | Minus |
| 2R | 10904998..10905170 | 277..449 | 100 | -> | Minus |
| 2R | 10905232..10905494 | 14..276 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:30 Download gff for
BS17571.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6792737..6792999 | 14..276 | 99 | | Minus |
| arm_2R | 6791866..6792142 | 629..905 | 100 | -> | Minus |
| arm_2R | 6792203..6792381 | 450..628 | 100 | -> | Minus |
| arm_2R | 6792503..6792675 | 277..449 | 100 | -> | Minus |
BS17571.complete Sequence
1415 bp assembled on 2010-05-12
GenBank Submission: KX802606
> BS17571.complete
GAAGTTATCAGTCGACATGGAGCCAAAGTCGCAGGATCAGGCTCCAAATC
GGGACGATCCTGACCTGCAGACTGAGCCTCTGACCATAGCCCAGTCCATA
ACCTCTTTCTACATGTACAATCCCTACGAGAAGCGAAGTGTGGAGGTGCC
CCTAACTAACTGTGACGCCTTCATTTCCCTGTTAAAATGTGTGATTGGAA
CGGGCATTCTGGCAATGCCGCTGGCCTTTCGATGCTCGGGATTCGTGATG
GGCACCGTGATGTCCATTCTGCTGATGATACTCCTGACGTACTCCATCCA
CTTGCTGATAGCTGACATGACGGAGTGCTGTCGAAGGCGCCGAGTTCCTC
AAGTTTCCATGCCGGAGGCCGTGAGGATTGCCTACGAGGAGGGTCCCAAG
TGGATCAATTGCTTTGGTCGGGCCGCTGGTTTTATGACCACTTGCGTTTT
GGTCTTCGGTCAGTTTCTGCTGTGCACCGTTTATCTGGTTTTCGTGTCCA
AGAACTTCAAGGAAATCGGTGACCATTATATTGAGAGGTACAATGAAAGG
TATTATGTGCTGGTCGCCTGTTTGCTGCTCTTGCCGCTCTTCATGATCCG
CCGTCTAAAGTATTTGGTACCCTTGAATTTGATCTCCAACTTCTTGCTAT
ACGCGGGATTCGCCCTAATCATGTACTATCTGTTCAATGGTCTTCCCAAT
ATTAATGATCGTGAGATGGTCACACCTCCTGTCGAATGGATTGAATTCAT
AGCCATCGCCGCCTTTTCCCTCACAGCCGTGGGTTCTATGCTCGTCGTCG
AGGCCCATATGGCACATCCGCAGAGCTATCTGGGCCTCTTTGGAGTCCTC
AATCTTGCTGTTTTATTCATCCTGCTCTCGAACATGTTTTTTGGAATCAT
CGGCTATTGGCGTTTCGGAGACAATGTCCATGCCAGTATTACCCTAAATA
TTCCACAGGATGAAATCCTTTCCCAGTTCATTAAGGTATTTATTGCCTCT
GGAATATTTCTGAGTTATCCTCTGAATGGTTTCGTAGTGATCACAGTGAT
GTTTAGCGACTATGAAAACTCTGAACCGAGGGGCAGGTATCGCACGCTAA
TTGAGTACGTAGTTCGATTGCTGTTTCTTTTTCTCACAGGTGCCGTGGCA
ATTGGTGTGCCCAATCTAGCGGCTCTCACGGAACTGGAAGGCGCTTTTTC
GTTGAGTAACTTGAATCTTCTATGTCCGGCATTGATCGATGTGTTCCTAA
ACTATAATGTGGGCTATGGCCGGCTGATGTGGAAGCTGATCCGGGATATC
TTACTTATCCTGATTGGTCTTATTTTCGGCATAGTTGGTTGCACGGTTGC
CTTGATGCAACTGATCCGTGATTTTCAGTTGACGCTCAACAGTATGTAAA
AGCTTTCTAGACCAT
BS17571.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polyph-RA | 1383 | CG12943-PA | 1..1383 | 17..1399 | 6915 | 100 | Plus |
| polyph-RC | 303 | CG12943-PC | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polyph-RA | 1546 | CG12943-RA | 92..1474 | 17..1399 | 6915 | 100 | Plus |
| polyph-RC | 1502 | CG12943-RC | 92..1045 | 17..966 | 4675 | 99.6 | Plus |
| polyph-RC | 1502 | CG12943-RC | 1046..1430 | 1015..1399 | 1925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10904157..10904637 | 307..787 | 2405 | 100 | Plus |
| 2R | 25286936 | 2R | 10905230..10905491 | 1138..1399 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 10904698..10904876 | 788..966 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 10904998..10905173 | 967..1142 | 880 | 100 | Plus |
| 2R | 25286936 | 2R | 10903945..10904095 | 157..307 | 755 | 100 | Plus |
| 2R | 25286936 | 2R | 10903661..10903734 | 17..90 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 10903794..10903859 | 91..156 | 330 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:04:34 has no hits.
BS17571.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-12 12:11:54 Download gff for
BS17571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12943-RA | 92..1472 | 17..1397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:10:08 Download gff for
BS17571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12943-RA | 92..1472 | 17..1397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:21:09 Download gff for
BS17571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| polyph-RA | 92..1472 | 17..1397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:21:09 Download gff for
BS17571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10903661..10903734 | 17..90 | 100 | -> | Plus |
| 2R | 10903794..10903859 | 91..156 | 100 | -> | Plus |
| 2R | 10903945..10904095 | 157..307 | 100 | -> | Plus |
| 2R | 10904158..10904637 | 308..787 | 100 | -> | Plus |
| 2R | 10904698..10904876 | 788..966 | 100 | -> | Plus |
| 2R | 10904998..10905170 | 967..1139 | 100 | -> | Plus |
| 2R | 10905232..10905489 | 1140..1397 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:10:08 Download gff for
BS17571.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6791166..6791239 | 17..90 | 100 | -> | Plus |
| arm_2R | 6791299..6791364 | 91..156 | 100 | -> | Plus |
| arm_2R | 6791450..6791600 | 157..307 | 100 | -> | Plus |
| arm_2R | 6791663..6792142 | 308..787 | 100 | -> | Plus |
| arm_2R | 6792203..6792381 | 788..966 | 100 | -> | Plus |
| arm_2R | 6792503..6792675 | 967..1139 | 100 | -> | Plus |
| arm_2R | 6792737..6792994 | 1140..1397 | 100 | | Plus |
BS17571.pep Sequence
Translation from 16 to 1398
> BS17571.pep
MEPKSQDQAPNRDDPDLQTEPLTIAQSITSFYMYNPYEKRSVEVPLTNCD
AFISLLKCVIGTGILAMPLAFRCSGFVMGTVMSILLMILLTYSIHLLIAD
MTECCRRRRVPQVSMPEAVRIAYEEGPKWINCFGRAAGFMTTCVLVFGQF
LLCTVYLVFVSKNFKEIGDHYIERYNERYYVLVACLLLLPLFMIRRLKYL
VPLNLISNFLLYAGFALIMYYLFNGLPNINDREMVTPPVEWIEFIAIAAF
SLTAVGSMLVVEAHMAHPQSYLGLFGVLNLAVLFILLSNMFFGIIGYWRF
GDNVHASITLNIPQDEILSQFIKVFIASGIFLSYPLNGFVVITVMFSDYE
NSEPRGRYRTLIEYVVRLLFLFLTGAVAIGVPNLAALTELEGAFSLSNLN
LLCPALIDVFLNYNVGYGRLMWKLIRDILLILIGLIFGIVGCTVALMQLI
RDFQLTLNSM*
BS17571.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| polyph-PA | 460 | CG12943-PA | 1..460 | 1..460 | 2368 | 100 | Plus |
| CG32081-PA | 471 | CG32081-PA | 7..429 | 34..453 | 884 | 41.1 | Plus |
| CG1139-PA | 451 | CG1139-PA | 31..447 | 34..450 | 758 | 35.3 | Plus |
| CG32079-PB | 457 | CG32079-PB | 45..448 | 46..449 | 661 | 33.9 | Plus |
| CG43693-PF | 455 | CG43693-PF | 31..451 | 34..453 | 651 | 31.5 | Plus |
