Clone Sequence Records
BS17572.complete Sequence
1625 bp assembled on 2009-12-08
GenBank Submission: KX805078
> BS17572.complete
GAAGTTATCACTCGACATGCAGTTTCCATTATTATTTGGCCTCCTTCTGA
CTGGAACATTATATTCCCAGTTGGAATTGGCCGAAGGATCAAAAATCCTG
GCTGTGTATGCCTTTCCGGGAAAATCACATTTTATGATGCACACTGCTTT
GATAAGGGAACTTGTCGAAAGTGGTCATCAGGTGACCATGGTAACAGCTT
TTAGTCTGGAGAAAGAGCAACTTGGCAGCAACTACACGGAGATCTTGATA
GAACCGGTCTACGATTTCTGGCACGATGTTAAGCTGAACTTTGGAGCCCA
ACACCTATTCGAGCTGACCCGCATGACCAACTATGATTTCCTCAAAATGC
TGGAGATTATCGGCCTCAAGACCACCGAACATGCCCTGCGGCAGCCCAAG
GTTCGGTCTCTCATTCATGCCGAGCAAAAGGAAGGAGTCTTCGATCTTCT
CCTGGCCGAGCAGTTCTATCAGGAGGCCTTCTTGGCACTGGCTCATCTGT
ACAAAATACCCGTGGTGACCACGAGCACTTTGGGCTATGAGAATCACATG
AGTCAGATGATGGGTCTGATTACACCTTGGTCCTTTGTACCACACGGTTT
TATGCCCTTCACCGATCGCATGAGTTTCCTGGAGAGGGTGAAGAACTCCT
ATGCATCCTTCTACGAAGACATGGACAGGCTGCTAAACTATTTTCCGAAA
ATGGATGCGGTGGCCAGGGAGTTCTTTGGACCCGTACTGACCGAGGTGCC
CAAGGTCAAGCACATGGAGCGTCAAATCTCAGTGATGCTACTAAACAGTC
ACGCACCGCTGACCACGGCACGTCCCACAGTGGACGCCATGGTGCCAGTG
GGCGGGATGCACATCTATCCACCCAAACCGCTGCCGGCTGACATGCAAGC
CCTCTTGGATGGCGCCACCGAGGGGGCCATCTTCTTCAGCCTGGGCAGCA
ATGTCCAGAGCAAGGACATGCCCGTGGAAATGCTGCGATTGTTCCTGCAG
GTATTCGGTTCGCTCAAGCAGCGGGTATTGTGGAAATTCGAGGATGAGAG
CATTAGCCAATTGCCAGATAACGTGATGGTCAGGAAGTGGCTGCCACAGG
CCGACATTCTGGCCCATCGTCATGTGAAGGTATTCATTACCCACGGTGGC
TTATTTGGCACCCAGGAGGGAGTGCATTATGCTGTGCCCATGCTGGGTAT
ACCCTTCTACTGTGATCAGCACCTTAATATGAACAAAGCGGTTTTGGGCG
GATATGCCATTAGTCTGCACTTCCAATCGATTACCGAGGAAATCCTGCGG
CACTCCTTGGACCAACTTATCCATAATGTGACCTACAAAGAGAACGTTCA
GAGGGTATCGGATATTTTCCGCGATCGTCCGCTGGAGCCGCGAAAAAGTG
CCGTCTATTGGATCGAATATGTCATCCGGCATCGAGGTGCTTCACATATG
AGATCCGCAGGCCTGGATCTCAACTGGTTCCAATTCTATTTGCTGGATGT
CATAGCATTTGTGGCTATCATTGCTTTAGCTGGCGTCATGGCTCTCTCAT
TGGCCATTCGATTACTGATGGGCAGTAATAAGAAACACAGGAAAGCTAAG
CAAAATTAAAAGCTTTCTAGACCAT
BS17572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15661-RB | 1593 | CG15661-PB | 1..1593 | 17..1609 | 7965 | 100 | Plus |
CG15661-RA | 1593 | CG15661-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
CG4302-RA | 1599 | CG4302-PA | 1081..1205 | 1097..1221 | 205 | 77.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:00:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15661-RB | 1899 | CG15661-RB | 223..1816 | 17..1610 | 7970 | 100 | Plus |
CG15661-RA | 1824 | CG15661-RA | 148..1741 | 17..1610 | 7970 | 100 | Plus |
CG4302-RA | 1754 | CG4302-RA | 1148..1272 | 1097..1221 | 205 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21215971..21216449 | 1219..741 | 2395 | 100 | Minus |
2R | 25286936 | 2R | 21216506..21216968 | 740..278 | 2315 | 100 | Minus |
2R | 25286936 | 2R | 21215518..21215911 | 1610..1217 | 1970 | 100 | Minus |
2R | 25286936 | 2R | 21217016..21217175 | 278..119 | 800 | 100 | Minus |
2R | 25286936 | 2R | 21217232..21217339 | 124..17 | 525 | 99.1 | Minus |
2R | 25286936 | 2R | 21213362..21213486 | 1221..1097 | 205 | 77.6 | Minus |
2L | 23513712 | 2L | 18512780..18512930 | 1073..1223 | 185 | 74.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:00:32 has no hits.
BS17572.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:44:20 Download gff for
BS17572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RB | 197..1781 | 17..1601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:03:29 Download gff for
BS17572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RA | 148..1732 | 17..1601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:02:48 Download gff for
BS17572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RB | 197..1781 | 17..1601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:01:50 Download gff for
BS17572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RA | 148..1732 | 17..1601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:01:50 Download gff for
BS17572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21215527..21215908 | 1220..1601 | 100 | <- | Minus |
2R | 21215971..21216449 | 741..1219 | 100 | <- | Minus |
2R | 21216506..21216967 | 279..740 | 100 | <- | Minus |
2R | 21217016..21217174 | 120..278 | 100 | <- | Minus |
2R | 21217237..21217339 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:03:29 Download gff for
BS17572.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17103032..17103413 | 1220..1601 | 100 | <- | Minus |
arm_2R | 17103476..17103954 | 741..1219 | 100 | <- | Minus |
arm_2R | 17104011..17104472 | 279..740 | 100 | <- | Minus |
arm_2R | 17104521..17104679 | 120..278 | 100 | <- | Minus |
arm_2R | 17104742..17104844 | 17..119 | 100 | | Minus |
BS17572.3prime Sequence
846 bp (797 high quality bases) assembled on 2007-05-15
> BS17572.3prime
ATGGTCTAGAAAGCTTTTAATTTTGCTTAGCTTTCCTGTGTTTCTTATTA
CTGCCCATCAGTAATCGAATGGCCAATGAGAGAGCCATGACGCCAGCTAA
AGCAATGATAGCCACAAATGCTATGACATCCAGCAAATAGAATTGGAACC
AGTTGAGATCCAGGCCTGCGGATCTCATATGTGAAGCACCTCGATGCCGG
ATGACATATTCGATCCAATAGACGGCACTTTTTCGCGGCTCCAGCGGACG
ATCGCGGAAAATATCCGATACCCTCTGAACGTTCTCTTTGTAGGTCACAT
TATGGATAAGTTGGTCCAAGGAGTGCCGCAGGATTTCCTCGGTAATCGAT
TGGAAGTGCAGACTAATGGCATATCCGCCCAAAACCGCTTTGTTCATATT
AAGGTGCTGATCACAGTAGAAGGGTATACCCAGCATGGGCACAGCATAAT
GCACTCCCTCCTGGGTGCCAAATAAGCCACCGTGGGTAATGAATACCTTC
ACATGACGATGGGCCAGAATGTCGGCCTGTGGCAGCCACTTCCTGACCAT
CACGTTATCTGGCAATTGGCTAATGCTCTCATCCTCGAATTTCCACAATA
CCCGCTGCTTGAGCGAACCGAATACCTGCAGGAACAATCGCAGCATTTCC
ACGGGCATGTCCTTGCTCTGGACATTGCTGCCCAGGCTGAAGAAGATGGC
CCCCTCGGTGGCGCCATCCAAGAGGGCTTGCATGTCAGCCGGCAGCGGTT
TGGGTGGATAGATGTGCATCCCGCCCACTGGCACCATGGCGTCCACTGTG
GGACGTGCCGTGGTCAGCGGTGCGTGACTGTTTAGTAGCATCACTG
BS17572.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15661-PA | 1593 | CG15661-RA | 764..1593 | 846..17 | 4150 | 100 | Minus |
CG15661-PB | 1593 | CG15661-RB | 764..1593 | 846..17 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15661-RB | 1899 | CG15661-RB | 986..1816 | 846..16 | 4155 | 100 | Minus |
CG15661-RA | 1824 | CG15661-RA | 911..1741 | 846..16 | 4155 | 100 | Minus |
CG4302-RA | 1754 | CG4302-RA | 1082..1272 | 595..405 | 215 | 75.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21215971..21216410 | 407..846 | 2200 | 100 | Plus |
2R | 25286936 | 2R | 21215518..21215911 | 16..409 | 1970 | 100 | Plus |
2R | 25286936 | 2R | 21213362..21213486 | 405..529 | 205 | 77.6 | Plus |
2L | 23513712 | 2L | 18512780..18512930 | 553..403 | 185 | 74.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:20:13 has no hits.
BS17572.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:14 Download gff for
BS17572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-PB | 764..1593 | 17..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:36 Download gff for
BS17572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RA | 911..1749 | 7..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:30 Download gff for
BS17572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RA | 911..1749 | 7..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:30 Download gff for
BS17572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21215510..21215908 | 7..406 | 99 | <- | Plus |
2R | 21215971..21216410 | 407..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:36 Download gff for
BS17572.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17103015..17103413 | 7..406 | 99 | <- | Plus |
arm_2R | 17103476..17103915 | 407..846 | 100 | | Plus |
BS17572.5prime Sequence
869 bp (740 high quality bases) assembled on 2007-05-15
> BS17572.5prime
GAAGTTATCACTCGACATGCAGTTTCCATTATTATTTGGCCTCCTTCTGA
CTGGAACATTATATTCCCAGTTGGAATTGGCCGAAGGATCAAAAATCCTG
GCTGTGTATGCCTTTCCGGGAAAATCACATTTTATGATGCACACTGCTTT
GATAAGGGAACTTGTCGAAAGTGGTCATCAGGTGACCATGGTAACAGCTT
TTAGTCTGGAGAAAGAGCAACTTGGCAGCAACTACACGGAGATCTTGATA
GAACCGGTCTACGATTTCTGGCACGATGTTAAGCTGAACTTTGGAGCCCA
ACACCTATTCGAGCTGACCCGCATGACCAACTATGATTTCCTCAAAATGC
TGGAGATTATCGGCCTCAAGACCACCGAACATGCCCTGCGGCAGCCCAAG
GTTCGGTCTCTCATTCATGCCGAGCAAAAGGAAGGAGTCTTCGATCTTCT
CCTGGCCGAGCAGTTCTATCAGGAGGCCTTCTTGGCACTGGCTCATCTGT
ACAAAATACCCGTGGTGACCACGAGCACTTTGGGCTATGAGAATCACATG
AGTCAGATGATGGGTCTGATTACACCTTGGTCCTTTGTACCACACGGTTT
TATGCCCTTCACCGATCGCATGAGTTTCCTGGAGAGGGTGAAGAACTCCT
ATGCATCCTTCTACGAAGACATGGACAGGCTGCTAAACTATTTTCCGAAN
ATGGATGCGGTGGCCAGGGAGTTCTTTGGACCCGTACTGACCGAGGTGCC
CAAGGTCAAGCACATGGAGCGTCAAATCTCAGTGATGCTACTAAACAGTC
ACGCACCGCTGACCACGGCACGTCCCACAGTGGACGCCATGGTGCCAGTG
GGCGGGATGCACATCTATC
BS17572.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15661-PA | 1593 | CG15661-RA | 1..853 | 17..869 | 4246 | 99.8 | Plus |
CG15661-PB | 1593 | CG15661-RB | 1..853 | 17..869 | 4246 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15661-RB | 1899 | CG15661-RB | 223..1075 | 17..869 | 4254 | 99.9 | Plus |
CG15661-RA | 1824 | CG15661-RA | 148..1000 | 17..869 | 4254 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21216506..21216968 | 740..278 | 2304 | 99.8 | Minus |
2R | 25286936 | 2R | 21217016..21217175 | 278..119 | 800 | 100 | Minus |
2R | 25286936 | 2R | 21216321..21216449 | 869..741 | 645 | 100 | Minus |
2R | 25286936 | 2R | 21217232..21217339 | 124..17 | 525 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:15:29 has no hits.
BS17572.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:51 Download gff for
BS17572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-PB | 1..853 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:36 Download gff for
BS17572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RA | 142..1000 | 11..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:07 Download gff for
BS17572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15661-RA | 142..1000 | 11..869 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:07 Download gff for
BS17572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21216321..21216449 | 741..869 | 100 | <- | Minus |
2R | 21216506..21216967 | 279..740 | 99 | <- | Minus |
2R | 21217016..21217174 | 120..278 | 100 | <- | Minus |
2R | 21217237..21217345 | 11..119 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:36 Download gff for
BS17572.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17103826..17103954 | 741..869 | 100 | <- | Minus |
arm_2R | 17104011..17104472 | 279..740 | 99 | <- | Minus |
arm_2R | 17104521..17104679 | 120..278 | 100 | <- | Minus |
arm_2R | 17104742..17104850 | 11..119 | 97 | | Minus |
BS17572.pep Sequence
Translation from 16 to 1608
> BS17572.pep
MQFPLLFGLLLTGTLYSQLELAEGSKILAVYAFPGKSHFMMHTALIRELV
ESGHQVTMVTAFSLEKEQLGSNYTEILIEPVYDFWHDVKLNFGAQHLFEL
TRMTNYDFLKMLEIIGLKTTEHALRQPKVRSLIHAEQKEGVFDLLLAEQF
YQEAFLALAHLYKIPVVTTSTLGYENHMSQMMGLITPWSFVPHGFMPFTD
RMSFLERVKNSYASFYEDMDRLLNYFPKMDAVAREFFGPVLTEVPKVKHM
ERQISVMLLNSHAPLTTARPTVDAMVPVGGMHIYPPKPLPADMQALLDGA
TEGAIFFSLGSNVQSKDMPVEMLRLFLQVFGSLKQRVLWKFEDESISQLP
DNVMVRKWLPQADILAHRHVKVFITHGGLFGTQEGVHYAVPMLGIPFYCD
QHLNMNKAVLGGYAISLHFQSITEEILRHSLDQLIHNVTYKENVQRVSDI
FRDRPLEPRKSAVYWIEYVIRHRGASHMRSAGLDLNWFQFYLLDVIAFVA
IIALAGVMALSLAIRLLMGSNKKHRKAKQN*
BS17572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:54:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15661-PB | 530 | CG15661-PB | 1..530 | 1..530 | 2750 | 100 | Plus |
CG15661-PA | 530 | CG15661-PA | 1..530 | 1..530 | 2750 | 100 | Plus |
CG4302-PA | 532 | CG4302-PA | 11..515 | 10..515 | 1449 | 53.4 | Plus |
CG6475-PD | 526 | CG6475-PD | 13..503 | 19..510 | 1306 | 50.6 | Plus |
CG10178-PB | 530 | CG10178-PB | 15..512 | 15..522 | 1088 | 42.8 | Plus |