Clone Sequence Records
BS17574.complete Sequence
1295 bp assembled on 2009-12-07
GenBank Submission: KX804151
> BS17574.complete
GAAGTTATCAGTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGA
CAAACTTTATTGAAATGCTGGACAAAATGCCGGAACTAAGAAAGTATAAA
CATCATTTTGAAAAGATTAAAGATAATTACATGCAACGCCTAGAGGTTGA
GATGCATGAATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGT
GTCACGGTGACTTCCATCTTCGCAATATGATGTTTAGACACAATAAGGAG
TTGGGAGCCTACGATGACGTGATGTTAGTCGACTTTCAATTGAGCAATCT
GTGCCCCATTACAGTGGACTTGACATACTCCGTATATATGCTGATGGAGC
CGGAACAGCGCTGGGAAATGGGAGAGAACTTGATCAATGAATATTTTTCG
GTTTTGGTAGCCACCCTCAGGAAAATTGGATACAAGGGGGATATGCCTAC
CCAAAGAGAATTGTGGGAGCAAATACAAAATAACAAGTATTATGATTTCT
TTCTGATAAGCACCTTTCTTCCTATAATGGTGGGCGTTAAATCAAATGAT
TTGAAAATGCATGAGGCACTCCAAGATTCCCAGGCCCGACTGAAGTCCTA
CTTCCTAGACGACTATGTTCAAGATGTCTATAAGCTTTTGACCAAGTATG
AACAACTAGGATACTTTAAGGATCTATAAAAGCTTTCTAGACCAT
BS17574.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1263 | CG31104-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG31300-RA | 1269 | CG31300-PA | 37..1109 | 47..1119 | 1525 | 76.1 | Plus |
CG13658-RB | 1269 | CG13658-PB | 154..592 | 164..602 | 590 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1382 | CG31104-RA | 61..1323 | 17..1279 | 6315 | 100 | Plus |
CG31300-RA | 1474 | CG31300-RA | 108..1180 | 47..1119 | 1525 | 76.1 | Plus |
CG13658-RB | 1334 | CG13658-RB | 165..603 | 164..602 | 590 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25285533..25286081 | 17..565 | 2745 | 100 | Plus |
3R | 32079331 | 3R | 25286135..25286665 | 564..1094 | 2655 | 100 | Plus |
3R | 32079331 | 3R | 25286730..25286915 | 1094..1279 | 930 | 100 | Plus |
3R | 32079331 | 3R | 25284305..25284835 | 564..1094 | 810 | 76.8 | Plus |
3R | 32079331 | 3R | 25283727..25284142 | 47..462 | 685 | 77.6 | Plus |
3R | 32079331 | 3R | 25287638..25287955 | 164..481 | 555 | 78.3 | Plus |
3R | 32079331 | 3R | 25289952..25290750 | 36..834 | 440 | 70.3 | Plus |
3R | 32079331 | 3R | 25304368..25304655 | 165..452 | 270 | 72.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:44:17 has no hits.
BS17574.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:41 Download gff for
BS17574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 1..1263 | 17..1279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:08 Download gff for
BS17574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..1321 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:21 Download gff for
BS17574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..1321 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:41 Download gff for
BS17574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..1323 | 17..1279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:40 Download gff for
BS17574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..1321 | 17..1277 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:40 Download gff for
BS17574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25285533..25286081 | 17..565 | 100 | -> | Plus |
3R | 25286137..25286665 | 566..1094 | 100 | -> | Plus |
3R | 25286731..25286913 | 1095..1277 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:21 Download gff for
BS17574.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21111255..21111803 | 17..565 | 100 | -> | Plus |
arm_3R | 21111859..21112387 | 566..1094 | 100 | -> | Plus |
arm_3R | 21112453..21112635 | 1095..1277 | 100 | | Plus |
BS17574.3prime Sequence
777 bp (752 high quality bases) assembled on 2007-05-15
> BS17574.3prime
ATGGTCTAGAAAGCTTTTATAGATCCTTAAAGTATCCTAGTTGTTCATAC
TTGGTCAAAAGCTTATAGACATCTTGAACATAGTCGTCTAGGAAGTAGGA
CTTCAGTCGGGCCTGGGAATCTTGGAGTGCCTCATGCATTTTCAAATCAT
TTGATTTAACGCCCACCATTATAGGAAGAAAGGTGCTTATCAGAAAGAAA
TCATAATACTTGTTATTTTGTATTTGCTCCCACAATTCTCTTTGGGTAGG
CATATCCCCCTTGTATCCAATTTTCCTGAGGGTGGCTACCAAAACCGAAA
AATATTCATTGATCAAGTTCTCTCCCATTTCCCAGCGCTGTTCCGGCTCC
ATCAGCATATATACGGAGTATGTCAAGTCCACTGTAATGGGGCACAGATT
GCTCAATTGAAAGTCGACTAACATCACGTCATCGTAGGCTCCCAACTCCT
TATTGTGTCTAAACATCATATTGCGAAGATGGAAGTCACCGTGACACAGG
ACGTAGTACCGATCGTTTCGCCGATATTTGTGATATTCATGCATCTCAAC
CTCTAGGCGTTGCATGTAATTATCTTTAATCTTTTCAAAATGATGTTTAT
ACTTTCTTAGTTCCGGCATTTTGTCCAGCATTTCAATAAAGTTTGTCATG
CCTGTTGTTATAAAAGGATCAGTATCGATTGTGGGCATTTCGAATAAGCC
ATACTGAAATTCCTTTAGGAAGTATGGTTGCTCATTGATGACTTTCATGC
TGACCGCATGCCACTTGGCCAGCTTGT
BS17574.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-PA | 1263 | CG31104-RA | 503..1263 | 777..17 | 3805 | 100 | Minus |
CG31300-PA | 1269 | CG31300-RA | 784..824 | 502..462 | 155 | 95.1 | Minus |
CG31300-PA | 1269 | CG31300-RA | 676..728 | 610..558 | 140 | 90.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1382 | CG31104-RA | 563..1323 | 777..17 | 3805 | 100 | Minus |
CG31300-RA | 1474 | CG31300-RA | 585..1180 | 772..177 | 955 | 78.2 | Minus |
CG13658-RB | 1334 | CG13658-RB | 521..603 | 776..694 | 205 | 83.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25286135..25286665 | 732..202 | 2655 | 100 | Minus |
3R | 32079331 | 3R | 25286730..25286915 | 202..17 | 930 | 100 | Minus |
3R | 32079331 | 3R | 25284305..25284835 | 732..202 | 810 | 76.8 | Minus |
3R | 32079331 | 3R | 25286035..25286081 | 777..731 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:53:38 has no hits.
BS17574.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:02 Download gff for
BS17574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-PA | 503..1263 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:02 Download gff for
BS17574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 563..1323 | 17..777 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:15 Download gff for
BS17574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 563..1323 | 17..777 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:15 Download gff for
BS17574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25286731..25286915 | 17..201 | 100 | | Minus |
3R | 25286035..25286081 | 731..777 | 100 | -> | Minus |
3R | 25286137..25286665 | 202..730 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:02 Download gff for
BS17574.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21111757..21111803 | 731..777 | 100 | -> | Minus |
arm_3R | 21111859..21112387 | 202..730 | 100 | -> | Minus |
arm_3R | 21112453..21112637 | 17..201 | 100 | | Minus |
BS17574.5prime Sequence
827 bp (714 high quality bases) assembled on 2007-05-15
> BS17574.5prime
GAAGTTATCAGTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGA
CAAACTTTATTGAAATGCTGGACAAAATGCCGGAACTAAAAAAGTATAAA
CATCATTTTGAAAAGATTAAAAATAATTACATGCAACGCCTAGAGGTTGA
GATGCATGAATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGT
GTCACGGTGACTTTCATCTTCGCAATA
BS17574.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-PA | 1263 | CG31104-RA | 1..811 | 17..827 | 3980 | 99.6 | Plus |
CG13658-PA | 1251 | CG13658-RA | 421..467 | 431..477 | 185 | 95.7 | Plus |
CG31300-PA | 1269 | CG31300-RA | 150..185 | 160..195 | 180 | 100 | Plus |
CG31300-PA | 1269 | CG31300-RA | 285..326 | 295..336 | 135 | 92.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-RA | 1382 | CG31104-RA | 61..871 | 17..827 | 4010 | 99.6 | Plus |
CG31300-RA | 1474 | CG31300-RA | 108..888 | 47..827 | 1100 | 76.2 | Plus |
CG13658-RB | 1334 | CG13658-RB | 165..603 | 164..602 | 605 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25285533..25286081 | 17..565 | 2745 | 100 | Plus |
3R | 32079331 | 3R | 25286135..25286398 | 564..827 | 1275 | 98.9 | Plus |
3R | 32079331 | 3R | 25283727..25284142 | 47..462 | 685 | 77.6 | Plus |
3R | 32079331 | 3R | 25287638..25287955 | 164..481 | 555 | 78.3 | Plus |
3R | 32079331 | 3R | 25284305..25284568 | 564..827 | 450 | 78 | Plus |
3R | 32079331 | 3R | 25289952..25290733 | 36..817 | 415 | 70.2 | Plus |
3R | 32079331 | 3R | 25304368..25304655 | 165..452 | 270 | 72.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:19:25 has no hits.
BS17574.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:59 Download gff for
BS17574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:43 Download gff for
BS17574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..870 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:25 Download gff for
BS17574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31104-RA | 61..870 | 17..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:25 Download gff for
BS17574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25285533..25286081 | 17..565 | 100 | -> | Plus |
3R | 25286137..25286397 | 566..826 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:43 Download gff for
BS17574.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21111255..21111803 | 17..565 | 100 | -> | Plus |
arm_3R | 21111859..21112119 | 566..826 | 98 | | Plus |
BS17574.pep Sequence
Translation from 16 to 1278
> BS17574.pep
MEGKNIEYNADELQAPAWLNAQFIGDILREYEQLPDLKVTDLQVSPATAQ
GDHYASVMFRTKVEYTTPKGKFFKPLIIKTMPEQEGHKKDMLSESHLFET
EIGMYCHALPEFERILREAGDNTKLFVPCIYHSLKPRQVMIFEDLVPQGY
TVIRDSPPSLGDLKLAFDKLAKWHAVSMKVINEQPYFLKEFQYGLFEMPT
IDTDPFITTGMTNFIEMLDKMPELRKYKHHFEKIKDNYMQRLEVEMHEYH
KYRRNDRYYVLCHGDFHLRNMMFRHNKELGAYDDVMLVDFQLSNLCPITV
DLTYSVYMLMEPEQRWEMGENLINEYFSVLVATLRKIGYKGDMPTQRELW
EQIQNNKYYDFFLISTFLPIMVGVKSNDLKMHEALQDSQARLKSYFLDDY
VQDVYKLLTKYEQLGYFKDL*
BS17574.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31104-PA | 420 | CG31104-PA | 1..420 | 1..420 | 2244 | 100 | Plus |
CG31300-PA | 422 | CG31300-PA | 9..422 | 7..420 | 1647 | 72.2 | Plus |
CG11893-PA | 416 | CG11893-PA | 9..416 | 7..420 | 1555 | 69.1 | Plus |
CG13658-PB | 422 | CG13658-PB | 9..422 | 7..420 | 1416 | 62.3 | Plus |
CG31436-PA | 420 | CG31436-PA | 6..416 | 4..415 | 1201 | 54.4 | Plus |