Clone BS17574 Report

Search the DGRC for BS17574

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG31104-RA
Protein status:BS17574.pep: full length peptide match
Sequenced Size:1295

Clone Sequence Records

BS17574.complete Sequence

1295 bp assembled on 2009-12-07

GenBank Submission: KX804151

> BS17574.complete
GAAGTTATCAGTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGA
CAAACTTTATTGAAATGCTGGACAAAATGCCGGAACTAAGAAAGTATAAA
CATCATTTTGAAAAGATTAAAGATAATTACATGCAACGCCTAGAGGTTGA
GATGCATGAATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGT
GTCACGGTGACTTCCATCTTCGCAATATGATGTTTAGACACAATAAGGAG
TTGGGAGCCTACGATGACGTGATGTTAGTCGACTTTCAATTGAGCAATCT
GTGCCCCATTACAGTGGACTTGACATACTCCGTATATATGCTGATGGAGC
CGGAACAGCGCTGGGAAATGGGAGAGAACTTGATCAATGAATATTTTTCG
GTTTTGGTAGCCACCCTCAGGAAAATTGGATACAAGGGGGATATGCCTAC
CCAAAGAGAATTGTGGGAGCAAATACAAAATAACAAGTATTATGATTTCT
TTCTGATAAGCACCTTTCTTCCTATAATGGTGGGCGTTAAATCAAATGAT
TTGAAAATGCATGAGGCACTCCAAGATTCCCAGGCCCGACTGAAGTCCTA
CTTCCTAGACGACTATGTTCAAGATGTCTATAAGCTTTTGACCAAGTATG
AACAACTAGGATACTTTAAGGATCTATAAAAGCTTTCTAGACCAT

BS17574.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:44:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1263 CG31104-PA 1..1263 17..1279 6315 100 Plus
CG31300-RA 1269 CG31300-PA 37..1109 47..1119 1525 76.1 Plus
CG13658-RB 1269 CG13658-PB 154..592 164..602 590 75.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1382 CG31104-RA 61..1323 17..1279 6315 100 Plus
CG31300-RA 1474 CG31300-RA 108..1180 47..1119 1525 76.1 Plus
CG13658-RB 1334 CG13658-RB 165..603 164..602 590 75.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25285533..25286081 17..565 2745 100 Plus
3R 32079331 3R 25286135..25286665 564..1094 2655 100 Plus
3R 32079331 3R 25286730..25286915 1094..1279 930 100 Plus
3R 32079331 3R 25284305..25284835 564..1094 810 76.8 Plus
3R 32079331 3R 25283727..25284142 47..462 685 77.6 Plus
3R 32079331 3R 25287638..25287955 164..481 555 78.3 Plus
3R 32079331 3R 25289952..25290750 36..834 440 70.3 Plus
3R 32079331 3R 25304368..25304655 165..452 270 72.9 Plus
Blast to na_te.dros performed on 2014-11-28 01:44:17 has no hits.

BS17574.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:41 Download gff for BS17574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 1..1263 17..1279 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:08 Download gff for BS17574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..1321 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:21 Download gff for BS17574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..1321 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:41 Download gff for BS17574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..1323 17..1279 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:40 Download gff for BS17574.complete
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..1321 17..1277 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:40 Download gff for BS17574.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25285533..25286081 17..565 100 -> Plus
3R 25286137..25286665 566..1094 100 -> Plus
3R 25286731..25286913 1095..1277 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:21 Download gff for BS17574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21111255..21111803 17..565 100 -> Plus
arm_3R 21111859..21112387 566..1094 100 -> Plus
arm_3R 21112453..21112635 1095..1277 100   Plus

BS17574.3prime Sequence

777 bp (752 high quality bases) assembled on 2007-05-15

> BS17574.3prime
ATGGTCTAGAAAGCTTTTATAGATCCTTAAAGTATCCTAGTTGTTCATAC
TTGGTCAAAAGCTTATAGACATCTTGAACATAGTCGTCTAGGAAGTAGGA
CTTCAGTCGGGCCTGGGAATCTTGGAGTGCCTCATGCATTTTCAAATCAT
TTGATTTAACGCCCACCATTATAGGAAGAAAGGTGCTTATCAGAAAGAAA
TCATAATACTTGTTATTTTGTATTTGCTCCCACAATTCTCTTTGGGTAGG
CATATCCCCCTTGTATCCAATTTTCCTGAGGGTGGCTACCAAAACCGAAA
AATATTCATTGATCAAGTTCTCTCCCATTTCCCAGCGCTGTTCCGGCTCC
ATCAGCATATATACGGAGTATGTCAAGTCCACTGTAATGGGGCACAGATT
GCTCAATTGAAAGTCGACTAACATCACGTCATCGTAGGCTCCCAACTCCT
TATTGTGTCTAAACATCATATTGCGAAGATGGAAGTCACCGTGACACAGG
ACGTAGTACCGATCGTTTCGCCGATATTTGTGATATTCATGCATCTCAAC
CTCTAGGCGTTGCATGTAATTATCTTTAATCTTTTCAAAATGATGTTTAT
ACTTTCTTAGTTCCGGCATTTTGTCCAGCATTTCAATAAAGTTTGTCATG
CCTGTTGTTATAAAAGGATCAGTATCGATTGTGGGCATTTCGAATAAGCC
ATACTGAAATTCCTTTAGGAAGTATGGTTGCTCATTGATGACTTTCATGC
TGACCGCATGCCACTTGGCCAGCTTGT

BS17574.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-PA 1263 CG31104-RA 503..1263 777..17 3805 100 Minus
CG31300-PA 1269 CG31300-RA 784..824 502..462 155 95.1 Minus
CG31300-PA 1269 CG31300-RA 676..728 610..558 140 90.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:53:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1382 CG31104-RA 563..1323 777..17 3805 100 Minus
CG31300-RA 1474 CG31300-RA 585..1180 772..177 955 78.2 Minus
CG13658-RB 1334 CG13658-RB 521..603 776..694 205 83.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25286135..25286665 732..202 2655 100 Minus
3R 32079331 3R 25286730..25286915 202..17 930 100 Minus
3R 32079331 3R 25284305..25284835 732..202 810 76.8 Minus
3R 32079331 3R 25286035..25286081 777..731 235 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:53:38 has no hits.

BS17574.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:02 Download gff for BS17574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-PA 503..1263 17..777 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:02 Download gff for BS17574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 563..1323 17..777 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:15 Download gff for BS17574.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 563..1323 17..777 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:15 Download gff for BS17574.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25286731..25286915 17..201 100   Minus
3R 25286035..25286081 731..777 100 -> Minus
3R 25286137..25286665 202..730 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:02 Download gff for BS17574.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21111757..21111803 731..777 100 -> Minus
arm_3R 21111859..21112387 202..730 100 -> Minus
arm_3R 21112453..21112637 17..201 100   Minus

BS17574.5prime Sequence

827 bp (714 high quality bases) assembled on 2007-05-15

> BS17574.5prime
GAAGTTATCAGTCGACATGGAAGGCAAAAATATTGAATATAATGCGGACG
AACTTCAGGCGCCAGCTTGGCTAAATGCTCAGTTTATCGGTGATATTCTG
AGAGAGTACGAGCAACTCCCGGATCTTAAAGTAACCGATCTGCAGGTATC
ACCCGCCACTGCCCAGGGAGATCACTATGCCAGCGTTATGTTCCGCACCA
AAGTGGAGTACACAACACCTAAGGGAAAGTTCTTCAAGCCACTGATCATC
AAAACTATGCCAGAGCAGGAAGGACATAAAAAGGACATGCTGTCCGAATC
GCATTTATTCGAAACGGAAATCGGAATGTACTGCCATGCCCTTCCAGAGT
TCGAAAGGATCCTCCGAGAAGCAGGGGACAATACCAAACTGTTTGTGCCC
TGCATTTATCACAGCTTGAAGCCGCGGCAAGTGATGATATTCGAGGATCT
GGTTCCGCAGGGGTACACCGTCATCCGCGATAGCCCGCCCTCACTGGGGG
ATTTGAAATTGGCCTTCGACAAGCTGGCCAAGTGGCATGCGGTCAGCATG
AAAGTCATCAATGAGCAACCATACTTCCTAAAGGAATTTCAGTATGGCTT
ATTCGAAATGCCCACAATCGATACTGATCCTTTTATAACAACAGGCATGA
CAAACTTTATTGAAATGCTGGACAAAATGCCGGAACTAAAAAAGTATAAA
CATCATTTTGAAAAGATTAAAAATAATTACATGCAACGCCTAGAGGTTGA
GATGCATGAATATCACAAATATCGGCGAAACGATCGGTACTACGTCCTGT
GTCACGGTGACTTTCATCTTCGCAATA

BS17574.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-PA 1263 CG31104-RA 1..811 17..827 3980 99.6 Plus
CG13658-PA 1251 CG13658-RA 421..467 431..477 185 95.7 Plus
CG31300-PA 1269 CG31300-RA 150..185 160..195 180 100 Plus
CG31300-PA 1269 CG31300-RA 285..326 295..336 135 92.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-RA 1382 CG31104-RA 61..871 17..827 4010 99.6 Plus
CG31300-RA 1474 CG31300-RA 108..888 47..827 1100 76.2 Plus
CG13658-RB 1334 CG13658-RB 165..603 164..602 605 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25285533..25286081 17..565 2745 100 Plus
3R 32079331 3R 25286135..25286398 564..827 1275 98.9 Plus
3R 32079331 3R 25283727..25284142 47..462 685 77.6 Plus
3R 32079331 3R 25287638..25287955 164..481 555 78.3 Plus
3R 32079331 3R 25284305..25284568 564..827 450 78 Plus
3R 32079331 3R 25289952..25290733 36..817 415 70.2 Plus
3R 32079331 3R 25304368..25304655 165..452 270 72.9 Plus
Blast to na_te.dros performed on 2015-02-10 15:19:25 has no hits.

BS17574.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:43:59 Download gff for BS17574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 02:33:43 Download gff for BS17574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..870 17..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:23:25 Download gff for BS17574.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31104-RA 61..870 17..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:23:25 Download gff for BS17574.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25285533..25286081 17..565 100 -> Plus
3R 25286137..25286397 566..826 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 02:33:43 Download gff for BS17574.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21111255..21111803 17..565 100 -> Plus
arm_3R 21111859..21112119 566..826 98   Plus

BS17574.pep Sequence

Translation from 16 to 1278

> BS17574.pep
MEGKNIEYNADELQAPAWLNAQFIGDILREYEQLPDLKVTDLQVSPATAQ
GDHYASVMFRTKVEYTTPKGKFFKPLIIKTMPEQEGHKKDMLSESHLFET
EIGMYCHALPEFERILREAGDNTKLFVPCIYHSLKPRQVMIFEDLVPQGY
TVIRDSPPSLGDLKLAFDKLAKWHAVSMKVINEQPYFLKEFQYGLFEMPT
IDTDPFITTGMTNFIEMLDKMPELRKYKHHFEKIKDNYMQRLEVEMHEYH
KYRRNDRYYVLCHGDFHLRNMMFRHNKELGAYDDVMLVDFQLSNLCPITV
DLTYSVYMLMEPEQRWEMGENLINEYFSVLVATLRKIGYKGDMPTQRELW
EQIQNNKYYDFFLISTFLPIMVGVKSNDLKMHEALQDSQARLKSYFLDDY
VQDVYKLLTKYEQLGYFKDL*

BS17574.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG31104-PA 420 CG31104-PA 1..420 1..420 2244 100 Plus
CG31300-PA 422 CG31300-PA 9..422 7..420 1647 72.2 Plus
CG11893-PA 416 CG11893-PA 9..416 7..420 1555 69.1 Plus
CG13658-PB 422 CG13658-PB 9..422 7..420 1416 62.3 Plus
CG31436-PA 420 CG31436-PA 6..416 4..415 1201 54.4 Plus