Clone BS17575 Report

Search the DGRC for BS17575

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG17350-RA
Protein status:BS17575.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS17575.3prime Sequence

879 bp (816 high quality bases) assembled on 2007-05-15

> BS17575.3prime
ATGGTCTAGAAAGCTTTCAGGAGAAAGGCCGCTCCAACTTGCCATCCACC
ACCTGGACAACCCCACTGTTGATGACACCCTTGTTGTGCTGATCCGTCTG
CTCTCTTCTGGCTTTGCTATCCCGACGGCGTCTGAACTCCGTGGATGACA
TGCAGTAGCAGGGCTTCCAGCTGGGCCGCCGATAGATCTGTCCCTGCTCC
TGCGGCACTCGCTCCGTGGTCCAAACCGGGACGTAGTGCGTCCAGGTCTC
GCCGTTCCTGTAAATGCTGCCTGCATCGGAACTTCCGCCGGCATAGACGT
TGCCGTGATAGTACTGCGGATAGTAGTCGCCGCGATTGGAGCCCTGGTAG
CCACCTCGATTGGCGCCCTGGTAGCCATGCTGCTCGCCGGAGAAGTTGGG
ATTCCACTGCGACTTGGGATCATATGGCTTGCGGGTCTTGTGCTTTGATT
CGCTGCCACCACGACCCTTGAAAATTGGCACACTGGCGTCCTCCTTGTCG
CCCTGCTGTTGAGCGGAACTGGTCTCGTTCCCGTCCGAATCGGAGGTGAT
TTCGAACGTGATGTCCGTGTGGATGCCCACGCGCTTCTTGTGCTTGCCCA
AATCCGTAATTTCCACGCTCTCCTTGGACTCTTTCGTTTGCTGCTGTCCA
TCGCCCGTATCGACGGTGACCCGTACTCCGTGGATCTTGGGGCGATTTCC
CCCGCTGGAAGTTCCGCTGCTGCCCCCGCCTGCATTTCCTCCTCCACCAC
TCAGGCTTCGTCCCGTTCCCGGGTCGTAGCTCCCATTGCCAGTTCCGCCC
GCCTGTCCCGGTTGTCCGGGTGAGCCCGTCTGATTCTGATTGTTGCTGCC
ATCGCTCTCATCGAAATCCAACTTGGAGG

BS17575.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 954 CG17350-RA 92..954 879..17 4315 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 1115 CG17350-RA 174..1036 879..17 4315 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19383014 493..17 2385 100 Minus
2L 23513712 2L 19381883..19382131 879..631 1245 100 Minus
2L 23513712 2L 19382196..19382335 632..493 700 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:55:04 has no hits.

BS17575.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:11 Download gff for BS17575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-PA 92..954 17..879 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:04 Download gff for BS17575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 174..1036 17..879 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:36 Download gff for BS17575.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 174..1036 17..879 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:36 Download gff for BS17575.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19381883..19382131 631..879 100 -> Minus
2L 19382198..19382335 493..630 100 -> Minus
2L 19382539..19383014 17..492 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:04 Download gff for BS17575.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19381883..19382131 631..879 100 -> Minus
arm_2L 19382198..19382335 493..630 100 -> Minus
arm_2L 19382539..19383014 17..492 100   Minus

BS17575.5prime Sequence

874 bp (784 high quality bases) assembled on 2007-05-15

> BS17575.5prime
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCAGGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACCACGGAGCGAGTGCCGCANGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCACGGAG
TTCAGACGCCGTCGGGATAACAAA

BS17575.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 954 CG17350-RA 1..853 17..869 4246 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 1115 CG17350-RA 77..940 12..874 4269 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19382918 494..874 1879 99.5 Plus
2L 23513712 2L 19381863..19382131 88..356 1345 100 Plus
2L 23513712 2L 19382196..19382335 355..494 700 100 Plus
2L 23513712 2L 19381012..19381086 17..91 375 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:56:17 has no hits.

BS17575.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:07 Download gff for BS17575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:42 Download gff for BS17575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..937 3..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:24 Download gff for BS17575.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..937 3..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:24 Download gff for BS17575.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19382198..19382335 357..494 100 -> Plus
2L 19380999..19381084 3..89 94 -> Plus
2L 19381865..19382131 90..356 100 -> Plus
2L 19382539..19382915 495..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:42 Download gff for BS17575.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19380999..19381084 3..89 94 -> Plus
arm_2L 19381865..19382131 90..356 100 -> Plus
arm_2L 19382198..19382335 357..494 100 -> Plus
arm_2L 19382539..19382915 495..871 99   Plus

BS17575.complete Sequence

986 bp assembled on 2007-06-21

GenBank Submission: KX800834

> BS17575.complete
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCAGGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACCACGGAGCGAGTGCCGCAGGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCACGGAG
TTCAGACGCCGTCGGGATAGCAAAGCCAGAAGAGAGCAGACGGATCAGCA
CAACAAGGGTGTCATCAACAGTGGGGTTGTCCAGGTGGTGGATGGCAAGT
TGGAGCGGCCTTTCTCCTGAAAGCTTTCTAGACCAT

BS17575.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 954 CG17350-PA 1..954 17..970 4770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-RA 1115 CG17350-RA 83..1036 17..970 4770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19382538..19383014 494..970 2385 100 Plus
2L 23513712 2L 19381863..19382131 88..356 1345 100 Plus
2L 23513712 2L 19382196..19382335 355..494 700 100 Plus
2L 23513712 2L 19381012..19381086 17..91 375 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:17:24 has no hits.

BS17575.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:09 Download gff for BS17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 1..954 17..970 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:17 Download gff for BS17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..1036 3..970 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:17 Download gff for BS17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 83..1035 17..969 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:10 Download gff for BS17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 70..1036 3..970 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:49 Download gff for BS17575.complete
Subject Subject Range Query Range Percent Splice Strand
CG17350-RA 83..1035 17..969 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:49 Download gff for BS17575.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19381865..19382131 90..356 100 -> Plus
2L 19382198..19382335 357..494 100 -> Plus
2L 19382539..19383013 495..969 100   Plus
2L 19381012..19381084 17..89 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:17 Download gff for BS17575.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19381012..19381084 17..89 100 -> Plus
arm_2L 19381865..19382131 90..356 100 -> Plus
arm_2L 19382198..19382335 357..494 100 -> Plus
arm_2L 19382539..19383013 495..969 100   Plus

BS17575.pep Sequence

Translation from 16 to 969

> BS17575.pep
MSSFTAHLLILLLGGLLLTHHCVQGQASKVSSKLDFDESDGSNNQNQTGS
PGQPGQAGGTGNGSYDPGTGRSLSGGGGNAGGGSSGTSSGGNRPKIHGVR
VTVDTGDGQQQTKESKESVEITDLGKHKKRVGIHTDITFEITSDSDGNET
SSAQQQGDKEDASVPIFKGRGGSESKHKTRKPYDPKSQWNPNFSGEQHGY
QGANRGGYQGSNRGDYYPQYYHGNVYAGGSSDAGSIYRNGETWTHYVPVW
TTERVPQEQGQIYRRPSWKPCYCMSSTEFRRRRDSKARREQTDQHNKGVI
NSGVVQVVDGKLERPFS*

BS17575.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17350-PA 317 CG17350-PA 1..317 1..317 1712 100 Plus