Clone Sequence Records
BS17575.3prime Sequence
879 bp (816 high quality bases) assembled on 2007-05-15
> BS17575.3prime
ATGGTCTAGAAAGCTTTCAGGAGAAAGGCCGCTCCAACTTGCCATCCACC
ACCTGGACAACCCCACTGTTGATGACACCCTTGTTGTGCTGATCCGTCTG
CTCTCTTCTGGCTTTGCTATCCCGACGGCGTCTGAACTCCGTGGATGACA
TGCAGTAGCAGGGCTTCCAGCTGGGCCGCCGATAGATCTGTCCCTGCTCC
TGCGGCACTCGCTCCGTGGTCCAAACCGGGACGTAGTGCGTCCAGGTCTC
GCCGTTCCTGTAAATGCTGCCTGCATCGGAACTTCCGCCGGCATAGACGT
TGCCGTGATAGTACTGCGGATAGTAGTCGCCGCGATTGGAGCCCTGGTAG
CCACCTCGATTGGCGCCCTGGTAGCCATGCTGCTCGCCGGAGAAGTTGGG
ATTCCACTGCGACTTGGGATCATATGGCTTGCGGGTCTTGTGCTTTGATT
CGCTGCCACCACGACCCTTGAAAATTGGCACACTGGCGTCCTCCTTGTCG
CCCTGCTGTTGAGCGGAACTGGTCTCGTTCCCGTCCGAATCGGAGGTGAT
TTCGAACGTGATGTCCGTGTGGATGCCCACGCGCTTCTTGTGCTTGCCCA
AATCCGTAATTTCCACGCTCTCCTTGGACTCTTTCGTTTGCTGCTGTCCA
TCGCCCGTATCGACGGTGACCCGTACTCCGTGGATCTTGGGGCGATTTCC
CCCGCTGGAAGTTCCGCTGCTGCCCCCGCCTGCATTTCCTCCTCCACCAC
TCAGGCTTCGTCCCGTTCCCGGGTCGTAGCTCCCATTGCCAGTTCCGCCC
GCCTGTCCCGGTTGTCCGGGTGAGCCCGTCTGATTCTGATTGTTGCTGCC
ATCGCTCTCATCGAAATCCAACTTGGAGG
BS17575.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-PA | 954 | CG17350-RA | 92..954 | 879..17 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:55:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 1115 | CG17350-RA | 174..1036 | 879..17 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19382538..19383014 | 493..17 | 2385 | 100 | Minus |
2L | 23513712 | 2L | 19381883..19382131 | 879..631 | 1245 | 100 | Minus |
2L | 23513712 | 2L | 19382196..19382335 | 632..493 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:55:04 has no hits.
BS17575.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:11 Download gff for
BS17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-PA | 92..954 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:31:04 Download gff for
BS17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 174..1036 | 17..879 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:36 Download gff for
BS17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 174..1036 | 17..879 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:36 Download gff for
BS17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19381883..19382131 | 631..879 | 100 | -> | Minus |
2L | 19382198..19382335 | 493..630 | 100 | -> | Minus |
2L | 19382539..19383014 | 17..492 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:31:04 Download gff for
BS17575.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19381883..19382131 | 631..879 | 100 | -> | Minus |
arm_2L | 19382198..19382335 | 493..630 | 100 | -> | Minus |
arm_2L | 19382539..19383014 | 17..492 | 100 | | Minus |
BS17575.5prime Sequence
874 bp (784 high quality bases) assembled on 2007-05-15
> BS17575.5prime
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCAGGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACCACGGAGCGAGTGCCGCANGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCACGGAG
TTCAGACGCCGTCGGGATAACAAA
BS17575.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-PA | 954 | CG17350-RA | 1..853 | 17..869 | 4246 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:56:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 1115 | CG17350-RA | 77..940 | 12..874 | 4269 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19382538..19382918 | 494..874 | 1879 | 99.5 | Plus |
2L | 23513712 | 2L | 19381863..19382131 | 88..356 | 1345 | 100 | Plus |
2L | 23513712 | 2L | 19382196..19382335 | 355..494 | 700 | 100 | Plus |
2L | 23513712 | 2L | 19381012..19381086 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:56:17 has no hits.
BS17575.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:07 Download gff for
BS17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 11:11:42 Download gff for
BS17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..937 | 3..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:24 Download gff for
BS17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..937 | 3..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:24 Download gff for
BS17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
2L | 19380999..19381084 | 3..89 | 94 | -> | Plus |
2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
2L | 19382539..19382915 | 495..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 11:11:42 Download gff for
BS17575.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19380999..19381084 | 3..89 | 94 | -> | Plus |
arm_2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
arm_2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
arm_2L | 19382539..19382915 | 495..871 | 99 | | Plus |
BS17575.complete Sequence
986 bp assembled on 2007-06-21
GenBank Submission: KX800834
> BS17575.complete
GAAGTTATCAGTCGACATGAGCTCTTTCACCGCCCACCTGTTGATATTGC
TCCTCGGTGGTCTGCTGCTAACTCATCACTGCGTCCAAGGTCAGGCGAGT
AAAGTGTCCTCCAAGTTGGATTTCGATGAGAGCGATGGCAGCAACAATCA
GAATCAGACGGGCTCACCCGGACAACCGGGACAGGCGGGCGGAACTGGCA
ATGGGAGCTACGACCCGGGAACGGGACGAAGCCTGAGTGGTGGAGGAGGA
AATGCAGGCGGGGGCAGCAGCGGAACTTCCAGCGGGGGAAATCGCCCCAA
GATCCACGGAGTACGGGTCACCGTCGATACGGGCGATGGACAGCAGCAAA
CGAAAGAGTCCAAGGAGAGCGTGGAAATTACGGATTTGGGCAAGCACAAG
AAGCGCGTGGGCATCCACACGGACATCACGTTCGAAATCACCTCCGATTC
GGACGGGAACGAGACCAGTTCCGCTCAACAGCAGGGCGACAAGGAGGACG
CCAGTGTGCCAATTTTCAAGGGTCGTGGTGGCAGCGAATCAAAGCACAAG
ACCCGCAAGCCATATGATCCCAAGTCGCAGTGGAATCCCAACTTCTCCGG
CGAGCAGCATGGCTACCAGGGCGCCAATCGAGGTGGCTACCAGGGCTCCA
ATCGCGGCGACTACTATCCGCAGTACTATCACGGCAACGTCTATGCCGGC
GGAAGTTCCGATGCAGGCAGCATTTACAGGAACGGCGAGACCTGGACGCA
CTACGTCCCGGTTTGGACCACGGAGCGAGTGCCGCAGGAGCAGGGACAGA
TCTATCGGCGGCCCAGCTGGAAGCCCTGCTACTGCATGTCATCCACGGAG
TTCAGACGCCGTCGGGATAGCAAAGCCAGAAGAGAGCAGACGGATCAGCA
CAACAAGGGTGTCATCAACAGTGGGGTTGTCCAGGTGGTGGATGGCAAGT
TGGAGCGGCCTTTCTCCTGAAAGCTTTCTAGACCAT
BS17575.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:17:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 954 | CG17350-PA | 1..954 | 17..970 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:17:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-RA | 1115 | CG17350-RA | 83..1036 | 17..970 | 4770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19382538..19383014 | 494..970 | 2385 | 100 | Plus |
2L | 23513712 | 2L | 19381863..19382131 | 88..356 | 1345 | 100 | Plus |
2L | 23513712 | 2L | 19382196..19382335 | 355..494 | 700 | 100 | Plus |
2L | 23513712 | 2L | 19381012..19381086 | 17..91 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:17:24 has no hits.
BS17575.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:44:09 Download gff for
BS17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 1..954 | 17..970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:31:17 Download gff for
BS17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..1036 | 3..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:49:17 Download gff for
BS17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 83..1035 | 17..969 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:44:10 Download gff for
BS17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 70..1036 | 3..970 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:17:49 Download gff for
BS17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17350-RA | 83..1035 | 17..969 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:17:49 Download gff for
BS17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
2L | 19382539..19383013 | 495..969 | 100 | | Plus |
2L | 19381012..19381084 | 17..89 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:49:17 Download gff for
BS17575.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19381012..19381084 | 17..89 | 100 | -> | Plus |
arm_2L | 19381865..19382131 | 90..356 | 100 | -> | Plus |
arm_2L | 19382198..19382335 | 357..494 | 100 | -> | Plus |
arm_2L | 19382539..19383013 | 495..969 | 100 | | Plus |
BS17575.pep Sequence
Translation from 16 to 969
> BS17575.pep
MSSFTAHLLILLLGGLLLTHHCVQGQASKVSSKLDFDESDGSNNQNQTGS
PGQPGQAGGTGNGSYDPGTGRSLSGGGGNAGGGSSGTSSGGNRPKIHGVR
VTVDTGDGQQQTKESKESVEITDLGKHKKRVGIHTDITFEITSDSDGNET
SSAQQQGDKEDASVPIFKGRGGSESKHKTRKPYDPKSQWNPNFSGEQHGY
QGANRGGYQGSNRGDYYPQYYHGNVYAGGSSDAGSIYRNGETWTHYVPVW
TTERVPQEQGQIYRRPSWKPCYCMSSTEFRRRRDSKARREQTDQHNKGVI
NSGVVQVVDGKLERPFS*
BS17575.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17350-PA | 317 | CG17350-PA | 1..317 | 1..317 | 1712 | 100 | Plus |