Clone Sequence Records
BS17576.complete Sequence
1613 bp assembled on 2009-12-07
GenBank Submission: KX800864
> BS17576.complete
GAAGTTATCAGTCGACATGTACTTCTTTTTCTTCGTTATTCGACGGGCGC
AATATAATTGGTATACGGCAAATACCAAATCGAGAATTCGGATCATAGCT
ACCGGAATTTTCACAGTCGGCGTAATAGTGATTACATATATTCAGTGCCG
TGCAATGATGAGAGAATCCTTTCAGAAGAACATACCATCGAATGACAATT
CATTGAAGGATATGAATCCTGACGATATGCGGGCGAAGATAAAGGAGATG
ATGATGCACGCCTGGCGAAACTATGCTCGCGTTGTTTGGGGCACCAACGA
GTTTCGTCCGATTTCCCGTCGTGTCCATTTTGGTGGCGACTTCGCAACCT
ACAAGCTTGGTGCCACTATCATCGAGAGCTTGGACACTTTGCATTTGATG
GGTCTGAACAAAGAGTTGAGGCGTTCTCGGGATTGGATAGAGAAATCCTT
CCATTTGGACCGGGTTGATGAAGCGTTGTCCGTTTATGAACTGACATCCA
GGCTGCTGTGTCCCATGCTCACTCTATATTCCCTCACCGGGGATTCCCTC
TACATGGACAAGGCCATCCATATTGCCGATAAGATCCTGCCTGCCTTCGA
CACGCCAACTGGTATACCCAGACGACTAGTGGTCCCAAAAGAAGGCAGCA
CCCTCACGAAGTACCTAAGTGATATCTCTCGCACTTCTGAATTTGGCTCT
CTGCACCTGGAGTTCTACTATCTCAGTGAAGTCTCTGGATATCCGGTGTA
CAGGGAGCGAGTGGATGCTATCCGCGAGATATTAGCTAAAACAACCAGGC
CCAATGGCCTTTATCCCAATGCCTATTGCACAAAATTTGGTAAGTGGGAA
AATTACAACTGCTCCATGCACCGACTTTATGATACCCTGCTAAAGTCATG
GATTCAGTCCGGGAGAACTGATACTCAAAATGCTGATACCTTCAAAGAAG
CCATGCTAGCTGTGGCTCAAAATCTGGTTGTCATCAATCCCGAGGACGTG
ACCTACGTGTCCACGTTCAGGAATGGCACTCTTTTCCATCGTATGAGGCA
CTCCGATTGCTTTGCCGGCGGGCTTTTTGTCCTGGGAGCAGCAGAAACCC
AAATGAAGCACTGGGAAAAGTATGCCCATATTGGCATAGGCCTCACAGAT
ACTTGTCACGACAGCTACTGGAGTTCTCCCACTCGGTTGGGTCCGGATAC
GTTTGCCTTCACGGAGGAAAGCCAGCAGGAAATAGAGCCGCTCCAGAGGA
ACTATTACAATTTACGGCCGGAAGTCGCGGAAACTTACTTGGTTCTGTGG
CGCATAACCCATCATCCACAGTACCGCTTGTGGGGATTGGAGATGGTGCA
GGCGATAGAGAAGTACTGCCGAATGCCCTACGGATATACTGGAGTGATGG
ACGTTAACAACGTTACTTCGGAACCGGATGACGTGCAGGGGTCCTTCTTC
TTGGGCTCCACTCTGAAGTATTTGTATCTGCTCTTCTCCGACGACGACGT
GGTTTCGCTGGAGCAGTGGGTCTTCAACAGTGCAGGCCATTTCCTGCCCA
TTAAGGGCGTGAACCCAATGTATCGTCAGCATAACTCATCGAACTAAAAG
CTTTCTAGACCAT
BS17576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1581 | CG31202-PA | 1..1581 | 17..1597 | 7905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1686 | CG31202-RA | 4..1585 | 17..1598 | 7910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29928802..29930383 | 1598..17 | 7910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:45:14 has no hits.
BS17576.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:25 Download gff for
BS17576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 1..1581 | 17..1597 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:15 Download gff for
BS17576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 4..1582 | 17..1595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:47 Download gff for
BS17576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 4..1582 | 17..1595 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:25 Download gff for
BS17576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 1..1589 | 15..1604 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:03 Download gff for
BS17576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 4..1582 | 17..1595 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:03 Download gff for
BS17576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29928805..29930383 | 17..1595 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:47 Download gff for
BS17576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25754527..25756105 | 17..1595 | 100 | | Minus |
BS17576.3prime Sequence
872 bp (785 high quality bases) assembled on 2007-05-15
> BS17576.3prime
ATGGTCTAGAAAGCTTTTAGTTCGATGAGTTATGCTGACGATACATTGGG
TTCACGCCCTTAATGGGCAGGAAATGGCCTGCACTGTTGAAGACCCACTG
CTCCAGCGAAACCACGTCGTCGTCGGAGAAGAGCAGATACAAATACTTCA
GAGTGGAGCCCAAGAAGAAGGACCCCTGCACGTCATCCGGTTCCGAAGTA
ACGTTGTTAACGTCCATCACTCCAGTATATCCGTAGGGCATTCGGCAGTA
CTTCTCTATCGCCTGCACCATCTCCAATCCCCACAAGCGGTACTGTGGAT
GATGGGTTATGCGCCACAGAACCAAGTAAGTTTCCGCGACTTCCGGCCGT
AAATTGTAATAGTTCCTCTGGAGCGGCTCTATTTCCTGCTGGCTTTCCTC
CGTGAAGGCAAACGTATCCGGACCCAACCGAGTGGGAGAACTCCAGTAGC
TGTCGTGACAAGTATCTGTGAGGCCTATGCCAATATGGGCATACTTTTCC
CAGTGCTTCATTTGGGTTTCTGCTGCTCCCAGGACAAAAAGCCCGCCGGC
AAAGCAATCGGAGTGCCTCATACGATGGAAAAGAGTGCCATTCCTGAACG
TGGACACGTAGGTCACGTCCTCGGGATTGATGACAACCAGATTTTGAGCC
ACAGCTAGCATGGCTTCTTTGAAGGTATCAGCATTTTGAGTATCAGTTCT
CCCGGACTGAATCCATGACTTTAGCAGGGTATCATAAAGTCGGTGCATGG
AGCAGTTGTAATTTTCCCACTTACCAAATTTTGTGCAATAGGCATTGAGA
TAAAGGCCATTGGGCCTGGTTGTTTTAGCTAATATCTCGCGGATAGCATC
CACTCGCTCCCTGTACACCGGA
BS17576.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-PA | 1581 | CG31202-RA | 726..1581 | 872..17 | 4255 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1686 | CG31202-RA | 729..1585 | 872..16 | 4270 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29928802..29929658 | 16..872 | 4270 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:07:47 has no hits.
BS17576.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:18 Download gff for
BS17576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-PA | 727..1581 | 17..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 18:49:56 Download gff for
BS17576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 730..1589 | 10..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:06:58 Download gff for
BS17576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 730..1589 | 10..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:06:58 Download gff for
BS17576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29928798..29929657 | 10..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 18:49:56 Download gff for
BS17576.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25754520..25755379 | 10..871 | 99 | | Plus |
BS17576.5prime Sequence
867 bp (783 high quality bases) assembled on 2007-05-15
> BS17576.5prime
GAAGTTATCAGTCGACATGTACTTCTTTTTCTTCGTTATTCGACGGGCGC
AATATAATTGGTATACGGCAAATACCAAATCGAGAATTCGGATCATAGCT
ACCGGAATTTTCACAGTCGGCGTAATAGTGATTACATATATTCAGTGCCG
TGCAATGATGAGAGAATCCTTTCAGAAGAACATACCATCGAATGACAATT
CATTGAAGGATATGAATCCTGACGATATGCGGGCGAAGATAAAGGAGATG
ATGATGCACGCCTGGCGAAACTATGCTCGCGTTGTTTGGGGCACCAACGA
GTTTCGTCCGATTTCCCGTCGTGTCCATTTTGGTGGCGACTTCGCAACCT
ACAAGCTTGGTGCCACTATCATCGAGAGCTTGGACACTTTGCATTTGATG
GGTCTGAACAAAGAGTTGAGGCGTTCTCGGGATTGGATAGAGAAATCCTT
CCATTTGGACCGGGTTGATGAAGCGTTGTCCGTTTATGAACTGACATCCA
GGCTGCTGTGTCCCATGCTCACTCTATATTCCCTCACCGGGGATTCCCTC
TACATGGACAAGGCCATCCATATTGCCGATAAGATCCTGCCTGCCTTCGA
CACGCCAACTGGTATACCCAGACGACTAGTGGTCCCAAAAGAAGGCAGCA
CCCTCACGAAGTACCTAAGTGATATCTCTCGCACTTCTGAATTTGGCTCT
CTGCACCTGGAGTTCTACTATCTCAGTGAAGTCTCTGGATATCCGGTGTA
CAGGGAGCGAGTGGATGCTATCCGCGAGATATTAGCTAAAACAACCAGGC
CCAATGGCCTTTATCCCAATGCCTATTGCACAAAATTTGGTAAGTGGGAA
AATACAACTGCTCCATG
BS17576.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-PA | 1581 | CG31202-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:16:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-RA | 1686 | CG31202-RA | 4..855 | 17..867 | 4235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:16:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29929532..29930383 | 867..17 | 4210 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:16:07 has no hits.
BS17576.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:46:55 Download gff for
BS17576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-PA | 1..852 | 17..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:49:38 Download gff for
BS17576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 1..855 | 15..867 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:30:53 Download gff for
BS17576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31202-RA | 1..855 | 15..867 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:30:53 Download gff for
BS17576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29929532..29930388 | 8..867 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:49:38 Download gff for
BS17576.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25755254..25756110 | 8..867 | 99 | | Minus |
BS17576.pep Sequence
Translation from 16 to 1596
> BS17576.pep
MYFFFFVIRRAQYNWYTANTKSRIRIIATGIFTVGVIVITYIQCRAMMRE
SFQKNIPSNDNSLKDMNPDDMRAKIKEMMMHAWRNYARVVWGTNEFRPIS
RRVHFGGDFATYKLGATIIESLDTLHLMGLNKELRRSRDWIEKSFHLDRV
DEALSVYELTSRLLCPMLTLYSLTGDSLYMDKAIHIADKILPAFDTPTGI
PRRLVVPKEGSTLTKYLSDISRTSEFGSLHLEFYYLSEVSGYPVYRERVD
AIREILAKTTRPNGLYPNAYCTKFGKWENYNCSMHRLYDTLLKSWIQSGR
TDTQNADTFKEAMLAVAQNLVVINPEDVTYVSTFRNGTLFHRMRHSDCFA
GGLFVLGAAETQMKHWEKYAHIGIGLTDTCHDSYWSSPTRLGPDTFAFTE
ESQQEIEPLQRNYYNLRPEVAETYLVLWRITHHPQYRLWGLEMVQAIEKY
CRMPYGYTGVMDVNNVTSEPDDVQGSFFLGSTLKYLYLLFSDDDVVSLEQ
WVFNSAGHFLPIKGVNPMYRQHNSSN*
BS17576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31202-PA | 526 | CG31202-PA | 1..526 | 1..526 | 2813 | 100 | Plus |
| alpha-Man-I-PO | 667 | CG42275-PO | 194..656 | 65..521 | 1223 | 51.2 | Plus |
| alpha-Man-I-PN | 667 | CG42275-PN | 194..656 | 65..521 | 1223 | 51.2 | Plus |
| alpha-Man-I-PM | 667 | CG42275-PM | 194..656 | 65..521 | 1223 | 51.2 | Plus |
| alpha-Man-I-PL | 667 | CG42275-PL | 194..656 | 65..521 | 1223 | 51.2 | Plus |
