Clone Sequence Records
BS17577.complete Sequence
1295 bp assembled on 2009-12-07
GenBank Submission: KX804027
> BS17577.complete
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGACATTCGAAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTCGAAACATTATGTTCAAGCATAAG
GATACTGTATCCTTAGAGGACTGCATGCTGCTGGACTTTCAAATCAGTAA
TCTCTTTCCCTTGACATTCGATCTACTCTATTCGATTTACATGCTTTTGG
AGCCGGAGCATCGATGGAATAACTGGGATGACCTCATCAATTATTACATC
TCCGTTCTGCAGGATGTTCTAAAGAAGATCGGCTATAAAGGCGTAATGCC
CAGTCAATCGGGTCTTTGGAAGCGCCTGCATCAACACAAGTACTACGAGT
TCTTTCTCATTAGCACCTTTCTACCGCTGATGTGGGCATTGAGGGATAAG
TCCGTTGACTTTGGCGATCTGCTTCAGAATGAAGAAAAGCGAAGAAAATG
CTCTTTTTCTAAAGGCTACATTAAGGAAGTCACCATATTGCTGGCTCGAC
TGGATCAATTGGGATTACTCCATGCCTAAAAGCTTTCTAGACCAT
BS17577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1263 | CG31436-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
CG13659-RA | 1254 | CG13659-PA | 106..440 | 134..468 | 325 | 73.1 | Plus |
CG31300-RA | 1269 | CG31300-PA | 148..437 | 164..453 | 310 | 73.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1402 | CG31436-RA | 78..1341 | 17..1280 | 6320 | 100 | Plus |
CG13659-RA | 1301 | CG13659-RA | 126..460 | 134..468 | 325 | 73.1 | Plus |
CG31300-RA | 1474 | CG31300-RA | 219..508 | 164..453 | 310 | 73.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25304214..25304768 | 17..571 | 2775 | 100 | Plus |
3R | 32079331 | 3R | 25304819..25305346 | 570..1097 | 2640 | 100 | Plus |
3R | 32079331 | 3R | 25305407..25305590 | 1097..1280 | 920 | 100 | Plus |
3R | 32079331 | 3R | 25283838..25284127 | 164..453 | 310 | 73.8 | Plus |
3R | 32079331 | 3R | 25285681..25285968 | 171..458 | 270 | 72.9 | Plus |
3R | 32079331 | 3R | 25287749..25287926 | 281..458 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:45:10 has no hits.
BS17577.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:27 Download gff for
BS17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 1..1263 | 17..1279 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:14 Download gff for
BS17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 38..1298 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:45 Download gff for
BS17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..1338 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:27 Download gff for
BS17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 38..1308 | 17..1287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:01 Download gff for
BS17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..1338 | 17..1277 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:01 Download gff for
BS17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25304214..25304768 | 17..571 | 100 | -> | Plus |
3R | 25304821..25305346 | 572..1097 | 100 | -> | Plus |
3R | 25305408..25305587 | 1098..1277 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:45 Download gff for
BS17577.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21129936..21130490 | 17..571 | 100 | -> | Plus |
arm_3R | 21130543..21131068 | 572..1097 | 100 | -> | Plus |
arm_3R | 21131130..21131309 | 1098..1277 | 100 | | Plus |
BS17577.3prime Sequence
852 bp (834 high quality bases) assembled on 2007-05-15
> BS17577.3prime
ATGGTCTAGAAAGCTTTTAGGCATGGAGTAATCCCAATTGATCCAGTCGA
GCCAGCAATATGGTGACTTCCTTAATGTAGCCTTTAGAAAAAGAGCATTT
TCTTCGCTTTTCTTCATTCTGAAGCAGATCGCCAAAGTCAACGGACTTAT
CCCTCAATGCCCACATCAGCGGTAGAAAGGTGCTAATGAGAAAGAACTCG
TAGTACTTGTGTTGATGCAGGCGCTTCCAAAGACCCGATTGACTGGGCAT
TACGCCTTTATAGCCGATCTTCTTTAGAACATCCTGCAGAACGGAGATGT
AATAATTGATGAGGTCATCCCAGTTATTCCATCGATGCTCCGGCTCCAAA
AGCATGTAAATCGAATAGAGTAGATCGAATGTCAAGGGAAAGAGATTACT
GATTTGAAAGTCCAGCAGCATGCAGTCCTCTAAGGATACAGTATCCTTAT
GCTTGAACATAATGTTTCGAAGGTGCAGGTCTCCGTGGCAAAGTACCCAG
TACTCGTCTTTTTTCTGGCTCTTTCGAATGTCCTTCCACTCTTCAACAAG
TCGCTCTAGGAAATCGTCCTTGATGCTTTCGAAGTACGGCTTATACTTAT
TCAACTCCGGCTCCTTTCCCAAAAGCTCAACGAAGAATTCCATTCCAGTT
CTCATAAAGGGATCATTCAGGACATGTGGCATCTCAAACAGTCCATGGGT
GTACGACTCTAGGAACTCTGGTTGCTCATTCTGCACTTTCAAGCTGACTG
CATGCCACTTGGCCAGTTTGAAGTAGATGCGTCGTATCTCATCTAATGTG
GCGTCCCGATCCCGTAGCACAATGTAACCCATCTCGGCCAGATCCTCAAA
GA
BS17577.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-PA | 1263 | CG31436-RA | 428..1263 | 852..17 | 4180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1402 | CG31436-RA | 505..1341 | 852..16 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25304819..25305346 | 726..199 | 2640 | 100 | Minus |
3R | 32079331 | 3R | 25305407..25305590 | 199..16 | 920 | 100 | Minus |
3R | 32079331 | 3R | 25304641..25304768 | 852..725 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 15:56:49 has no hits.
BS17577.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:28 Download gff for
BS17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-PA | 429..1263 | 17..851 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:54 Download gff for
BS17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 506..1348 | 9..851 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:41 Download gff for
BS17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 506..1348 | 9..851 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:41 Download gff for
BS17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25304642..25304768 | 725..851 | 100 | -> | Minus |
3R | 25304821..25305346 | 199..724 | 100 | -> | Minus |
3R | 25305408..25305597 | 9..198 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:54 Download gff for
BS17577.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21130364..21130490 | 725..851 | 100 | -> | Minus |
arm_3R | 21130543..21131068 | 199..724 | 100 | -> | Minus |
arm_3R | 21131130..21131319 | 9..198 | 98 | | Minus |
BS17577.5prime Sequence
846 bp (760 high quality bases) assembled on 2007-05-15
> BS17577.5prime
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGGACATTCGAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTTCGAACATTATGTTCAAGCA
BS17577.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-PA | 1263 | CG31436-RA | 1..748 | 17..764 | 3740 | 100 | Plus |
CG31436-PA | 1263 | CG31436-RA | 757..810 | 773..826 | 270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:06:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-RA | 1402 | CG31436-RA | 78..907 | 17..846 | 4060 | 99.5 | Plus |
CG13659-RA | 1301 | CG13659-RA | 126..460 | 134..468 | 325 | 73.9 | Plus |
CG31300-RA | 1474 | CG31300-RA | 219..508 | 164..453 | 310 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:06:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25304214..25304768 | 17..571 | 2775 | 100 | Plus |
3R | 32079331 | 3R | 25304819..25305095 | 570..846 | 1245 | 98.2 | Plus |
3R | 32079331 | 3R | 25283838..25284127 | 164..453 | 310 | 73.8 | Plus |
3R | 32079331 | 3R | 25285681..25285968 | 171..458 | 270 | 72.9 | Plus |
3R | 32079331 | 3R | 25287749..25287926 | 281..458 | 185 | 73.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:06:28 has no hits.
BS17577.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:04 Download gff for
BS17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:47 Download gff for
BS17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..906 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:50:52 Download gff for
BS17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31436-RA | 78..906 | 17..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:50:52 Download gff for
BS17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25304214..25304768 | 17..571 | 100 | -> | Plus |
3R | 25304821..25305094 | 572..845 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:47 Download gff for
BS17577.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21129936..21130490 | 17..571 | 100 | -> | Plus |
arm_3R | 21130543..21130816 | 572..845 | 98 | | Plus |
BS17577.pep Sequence
Translation from 16 to 1278
> BS17577.pep
MSGNPQNNQFNDDELVPPEWLNSEFMARVLEGNELEAAVKVIDLTFSPAS
AKGDHYASIMFRARVKYTNRKGEFQKSLIIKTMPEAEGHKKDMLGGSPIF
ETEMGLYTKVLPEFERILRQVGDDTQLYVNCIYHSLEPHQVLIFEDLAEM
GYIVLRDRDATLDEIRRIYFKLAKWHAVSLKVQNEQPEFLESYTHGLFEM
PHVLNDPFMRTGMEFFVELLGKEPELNKYKPYFESIKDDFLERLVEEWKD
IRKSQKKDEYWVLCHGDLHLRNIMFKHKDTVSLEDCMLLDFQISNLFPLT
FDLLYSIYMLLEPEHRWNNWDDLINYYISVLQDVLKKIGYKGVMPSQSGL
WKRLHQHKYYEFFLISTFLPLMWALRDKSVDFGDLLQNEEKRRKCSFSKG
YIKEVTILLARLDQLGLLHA*
BS17577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31436-PA | 420 | CG31436-PA | 1..420 | 1..420 | 2232 | 100 | Plus |
CG31300-PA | 422 | CG31300-PA | 9..417 | 9..416 | 1233 | 55.7 | Plus |
CG31104-PA | 420 | CG31104-PA | 4..415 | 6..416 | 1201 | 54.4 | Plus |
CG11893-PA | 416 | CG11893-PA | 1..411 | 1..416 | 1200 | 52.2 | Plus |
CG13658-PB | 422 | CG13658-PB | 1..417 | 1..416 | 1178 | 52 | Plus |