Clone BS17577 Report

Search the DGRC for BS17577

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG31436-RA
Protein status:BS17577.pep: full length peptide match
Sequenced Size:1295

Clone Sequence Records

BS17577.complete Sequence

1295 bp assembled on 2009-12-07

GenBank Submission: KX804027

> BS17577.complete
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGACATTCGAAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTCGAAACATTATGTTCAAGCATAAG
GATACTGTATCCTTAGAGGACTGCATGCTGCTGGACTTTCAAATCAGTAA
TCTCTTTCCCTTGACATTCGATCTACTCTATTCGATTTACATGCTTTTGG
AGCCGGAGCATCGATGGAATAACTGGGATGACCTCATCAATTATTACATC
TCCGTTCTGCAGGATGTTCTAAAGAAGATCGGCTATAAAGGCGTAATGCC
CAGTCAATCGGGTCTTTGGAAGCGCCTGCATCAACACAAGTACTACGAGT
TCTTTCTCATTAGCACCTTTCTACCGCTGATGTGGGCATTGAGGGATAAG
TCCGTTGACTTTGGCGATCTGCTTCAGAATGAAGAAAAGCGAAGAAAATG
CTCTTTTTCTAAAGGCTACATTAAGGAAGTCACCATATTGCTGGCTCGAC
TGGATCAATTGGGATTACTCCATGCCTAAAAGCTTTCTAGACCAT

BS17577.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1263 CG31436-PA 1..1263 17..1279 6315 100 Plus
CG13659-RA 1254 CG13659-PA 106..440 134..468 325 73.1 Plus
CG31300-RA 1269 CG31300-PA 148..437 164..453 310 73.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1402 CG31436-RA 78..1341 17..1280 6320 100 Plus
CG13659-RA 1301 CG13659-RA 126..460 134..468 325 73.1 Plus
CG31300-RA 1474 CG31300-RA 219..508 164..453 310 73.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25304214..25304768 17..571 2775 100 Plus
3R 32079331 3R 25304819..25305346 570..1097 2640 100 Plus
3R 32079331 3R 25305407..25305590 1097..1280 920 100 Plus
3R 32079331 3R 25283838..25284127 164..453 310 73.8 Plus
3R 32079331 3R 25285681..25285968 171..458 270 72.9 Plus
3R 32079331 3R 25287749..25287926 281..458 185 73.6 Plus
Blast to na_te.dros performed on 2014-11-28 01:45:10 has no hits.

BS17577.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:27 Download gff for BS17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 1..1263 17..1279 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:14 Download gff for BS17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 38..1298 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:45 Download gff for BS17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..1338 17..1277 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:27 Download gff for BS17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 38..1308 17..1287 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:56:01 Download gff for BS17577.complete
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..1338 17..1277 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:56:01 Download gff for BS17577.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25304214..25304768 17..571 100 -> Plus
3R 25304821..25305346 572..1097 100 -> Plus
3R 25305408..25305587 1098..1277 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:45 Download gff for BS17577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21129936..21130490 17..571 100 -> Plus
arm_3R 21130543..21131068 572..1097 100 -> Plus
arm_3R 21131130..21131309 1098..1277 100   Plus

BS17577.3prime Sequence

852 bp (834 high quality bases) assembled on 2007-05-15

> BS17577.3prime
ATGGTCTAGAAAGCTTTTAGGCATGGAGTAATCCCAATTGATCCAGTCGA
GCCAGCAATATGGTGACTTCCTTAATGTAGCCTTTAGAAAAAGAGCATTT
TCTTCGCTTTTCTTCATTCTGAAGCAGATCGCCAAAGTCAACGGACTTAT
CCCTCAATGCCCACATCAGCGGTAGAAAGGTGCTAATGAGAAAGAACTCG
TAGTACTTGTGTTGATGCAGGCGCTTCCAAAGACCCGATTGACTGGGCAT
TACGCCTTTATAGCCGATCTTCTTTAGAACATCCTGCAGAACGGAGATGT
AATAATTGATGAGGTCATCCCAGTTATTCCATCGATGCTCCGGCTCCAAA
AGCATGTAAATCGAATAGAGTAGATCGAATGTCAAGGGAAAGAGATTACT
GATTTGAAAGTCCAGCAGCATGCAGTCCTCTAAGGATACAGTATCCTTAT
GCTTGAACATAATGTTTCGAAGGTGCAGGTCTCCGTGGCAAAGTACCCAG
TACTCGTCTTTTTTCTGGCTCTTTCGAATGTCCTTCCACTCTTCAACAAG
TCGCTCTAGGAAATCGTCCTTGATGCTTTCGAAGTACGGCTTATACTTAT
TCAACTCCGGCTCCTTTCCCAAAAGCTCAACGAAGAATTCCATTCCAGTT
CTCATAAAGGGATCATTCAGGACATGTGGCATCTCAAACAGTCCATGGGT
GTACGACTCTAGGAACTCTGGTTGCTCATTCTGCACTTTCAAGCTGACTG
CATGCCACTTGGCCAGTTTGAAGTAGATGCGTCGTATCTCATCTAATGTG
GCGTCCCGATCCCGTAGCACAATGTAACCCATCTCGGCCAGATCCTCAAA
GA

BS17577.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-PA 1263 CG31436-RA 428..1263 852..17 4180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:56:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1402 CG31436-RA 505..1341 852..16 4185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25304819..25305346 726..199 2640 100 Minus
3R 32079331 3R 25305407..25305590 199..16 920 100 Minus
3R 32079331 3R 25304641..25304768 852..725 640 100 Minus
Blast to na_te.dros performed on 2015-02-12 15:56:49 has no hits.

BS17577.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:28 Download gff for BS17577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-PA 429..1263 17..851 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:19:54 Download gff for BS17577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 506..1348 9..851 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:28:41 Download gff for BS17577.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 506..1348 9..851 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:28:41 Download gff for BS17577.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25304642..25304768 725..851 100 -> Minus
3R 25304821..25305346 199..724 100 -> Minus
3R 25305408..25305597 9..198 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:19:54 Download gff for BS17577.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21130364..21130490 725..851 100 -> Minus
arm_3R 21130543..21131068 199..724 100 -> Minus
arm_3R 21131130..21131319 9..198 98   Minus

BS17577.5prime Sequence

846 bp (760 high quality bases) assembled on 2007-05-15

> BS17577.5prime
GAAGTTATCAGTCGACATGTCCGGGAACCCCCAAAACAACCAGTTTAACG
ATGACGAATTGGTGCCACCTGAGTGGCTCAACTCCGAGTTCATGGCTCGC
GTTTTGGAAGGCAATGAGCTGGAGGCCGCGGTCAAGGTTATCGATTTGAC
CTTCTCCCCGGCGAGTGCGAAGGGAGATCACTATGCCAGCATCATGTTCC
GGGCAAGGGTGAAGTACACCAACCGAAAAGGCGAGTTCCAGAAGTCGCTG
ATCATCAAGACAATGCCAGAGGCAGAGGGACACAAGAAGGATATGCTCGG
AGGATCGCCCATATTCGAAACGGAGATGGGATTGTACACAAAGGTGCTGC
CCGAGTTCGAGAGGATCCTTCGACAGGTCGGCGATGACACCCAGCTATAT
GTGAATTGCATATACCACAGCCTGGAGCCGCATCAGGTCCTGATCTTTGA
GGATCTGGCCGAGATGGGTTACATTGTGCTACGGGATCGGGACGCCACAT
TAGATGAGATACGACGCATCTACTTCAAACTGGCCAAGTGGCATGCAGTC
AGCTTGAAAGTGCAGAATGAGCAACCAGAGTTCCTAGAGTCGTACACCCA
TGGACTGTTTGAGATGCCACATGTCCTGAATGATCCCTTTATGAGAACTG
GAATGGAATTCTTCGTTGAGCTTTTGGGAAAGGAGCCGGAGTTGAATAAG
TATAAGCCGTACTTCGAAAGCATCAAGGACGATTTCCTAGAGCGACTTGT
TGAAGAGTGGAAGGGACATTCGAAGAGCCAGAAAAAAGACGAGTACTGGG
TACTTTGCCACGGAGACCTGCACCTTTCGAACATTATGTTCAAGCA

BS17577.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-PA 1263 CG31436-RA 1..748 17..764 3740 100 Plus
CG31436-PA 1263 CG31436-RA 757..810 773..826 270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:06:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-RA 1402 CG31436-RA 78..907 17..846 4060 99.5 Plus
CG13659-RA 1301 CG13659-RA 126..460 134..468 325 73.9 Plus
CG31300-RA 1474 CG31300-RA 219..508 164..453 310 75.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25304214..25304768 17..571 2775 100 Plus
3R 32079331 3R 25304819..25305095 570..846 1245 98.2 Plus
3R 32079331 3R 25283838..25284127 164..453 310 73.8 Plus
3R 32079331 3R 25285681..25285968 171..458 270 72.9 Plus
3R 32079331 3R 25287749..25287926 281..458 185 73.6 Plus
Blast to na_te.dros performed on 2015-02-13 15:06:28 has no hits.

BS17577.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:04 Download gff for BS17577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-PA 1..829 17..845 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:17:47 Download gff for BS17577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..906 17..845 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:50:52 Download gff for BS17577.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31436-RA 78..906 17..845 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:50:52 Download gff for BS17577.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25304214..25304768 17..571 100 -> Plus
3R 25304821..25305094 572..845 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:17:47 Download gff for BS17577.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21129936..21130490 17..571 100 -> Plus
arm_3R 21130543..21130816 572..845 98   Plus

BS17577.pep Sequence

Translation from 16 to 1278

> BS17577.pep
MSGNPQNNQFNDDELVPPEWLNSEFMARVLEGNELEAAVKVIDLTFSPAS
AKGDHYASIMFRARVKYTNRKGEFQKSLIIKTMPEAEGHKKDMLGGSPIF
ETEMGLYTKVLPEFERILRQVGDDTQLYVNCIYHSLEPHQVLIFEDLAEM
GYIVLRDRDATLDEIRRIYFKLAKWHAVSLKVQNEQPEFLESYTHGLFEM
PHVLNDPFMRTGMEFFVELLGKEPELNKYKPYFESIKDDFLERLVEEWKD
IRKSQKKDEYWVLCHGDLHLRNIMFKHKDTVSLEDCMLLDFQISNLFPLT
FDLLYSIYMLLEPEHRWNNWDDLINYYISVLQDVLKKIGYKGVMPSQSGL
WKRLHQHKYYEFFLISTFLPLMWALRDKSVDFGDLLQNEEKRRKCSFSKG
YIKEVTILLARLDQLGLLHA*

BS17577.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG31436-PA 420 CG31436-PA 1..420 1..420 2232 100 Plus
CG31300-PA 422 CG31300-PA 9..417 9..416 1233 55.7 Plus
CG31104-PA 420 CG31104-PA 4..415 6..416 1201 54.4 Plus
CG11893-PA 416 CG11893-PA 1..411 1..416 1200 52.2 Plus
CG13658-PB 422 CG13658-PB 1..417 1..416 1178 52 Plus