Clone Sequence Records
BS17578.complete Sequence
1475 bp assembled on 2009-12-07
GenBank Submission: KX805574
> BS17578.complete
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCAGGAGCTAAAG
CTGGTTCCTGAAGAGGATTTGCCCATTTTGTGGATAGGCGAACGCAAGTA
CAGAGGAAACGATATCCGCATTGCCGAGATTGAGCTGGAGTACATTGTGC
CCGGTTCGCAGCTCAGCTTTATAGATGTATCGCACGGCATCATGGGCCAT
CCCAAGAGCCTCTACAACACGCTTCTTAGTCTCGACTGGCCGGCTGTCCG
CTTCTCAAACTTCTCGGAAAAGTTCGATCCGTACCATATAATCAGGAGAC
CTCACCTGCAAATACCCAAGATAGGTGAGCTTCAGATGCGTACAATGAAA
GAGAAATATGAACATTTCTACAAGCTCTGTAAGGTTCATGAGCGGGTCAC
ACACCATCAGATCTGCAAGTGGGTCAAACGAGACATCAACATAGCCTTCT
TTCGGTCCGGAGGTCTACTCACGAACGTAGTCTCGCGTTGTGAAAAGGAG
TTGGCAAGCACATCTTCAGGACAAAGGGTCGATCAGATCATCTCCAACTA
TTTTAAGATCATGTCCAAAATACGCAAGGAGGATAGAGATCCGGAGCATG
CATCATCTACGCGTAGTAGTATTGCATCGCGATTTAGTGTAGGCAAGGCA
AAGCGGTAAAAGCTTTCTAGACCAT
BS17578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1443 | CG31467-PA | 1..1443 | 17..1459 | 7215 | 100 | Plus |
CG31391-RA | 1443 | CG31391-PA | 13..1367 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1464 | CG14689-PA | 417..1044 | 439..1066 | 470 | 71.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1694 | CG31467-RA | 130..1574 | 17..1461 | 7225 | 100 | Plus |
CG31391-RA | 1704 | CG31391-RA | 99..1453 | 29..1383 | 2380 | 78.4 | Plus |
CG14689-RA | 1661 | CG14689-RA | 526..1153 | 439..1066 | 470 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10705290..10706734 | 1461..17 | 7225 | 100 | Minus |
3R | 32079331 | 3R | 10703623..10704977 | 1383..29 | 2380 | 78.4 | Minus |
3R | 32079331 | 3R | 10710096..10710723 | 1066..439 | 470 | 71.7 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 400 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:45:03 has no hits.
BS17578.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:28 Download gff for
BS17578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 1..1443 | 17..1459 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:13 Download gff for
BS17578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1570 | 17..1457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:40 Download gff for
BS17578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1570 | 17..1457 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:30 Download gff for
BS17578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1574 | 17..1461 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:58 Download gff for
BS17578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..1570 | 17..1457 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:58 Download gff for
BS17578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10705294..10706734 | 17..1457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:40 Download gff for
BS17578.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6531016..6532456 | 17..1457 | 100 | | Minus |
BS17578.3prime Sequence
886 bp (824 high quality bases) assembled on 2007-05-15
> BS17578.3prime
ATGGTCTAGAAAGCTTTTACCGCTTTGCCTTGCCTACACTAAATCGCGAT
GCAATACTACTACGCGTAGATGATGCATGCTCCGGATCTCTATCCTCCTT
GCGTATTTTGGACATGATCTTAAAATAGTTGGAGATGATCTGATCGACCC
TTTGTCCTGAAGATGTGCTTGCCAACTCCTTTTCACAACGCGAGACTACG
TTCGTGAGTAGACCTCCGGACCGAAAGAAGGCTATGTTGATGTCTCGTTT
GACCCACTTGCAGATCTGATGGTGTGTGACCCGCTCATGAACCTTACAGA
GCTTGTAGAAATGTTCATATTTCTCTTTCATTGTACGCATCTGAAGCTCA
CCTATCTTGGGTATTTGCAGGTGAGGTCTCCTGATTATATGGTACGGATC
GAACTTTTCCGAGAAGTTTGAGAAGCGGACAGCCGGCCAGTCGAGACTAA
GAAGCGTGTTGTAGAGGCTCTTGGGATGGCCCATGATGCCGTGCGATACA
TCTATAAAGCTGAGCTGCGAACCGGGCACAATGTACTCCAGCTCAATCTC
GGCAATGCGGATATCGTTTCCTCTGTACTTGCGTTCGCCTATCCACAAAA
TGGGCAAATCCTCTTCAGGAACCAGCTTTAGCTCCTGGACTAGAGGCGAT
TCCTGAATTCGATAATTGTAGTTCTTTTTGTTTCTGCCGTAGAGAAGACT
GCGCTCCGCCTCCGTGAACTCGAGGTATTCTGGGTGGGCGGAAACAAAGT
GCTCGGAGCGGAAAAGGCGATTGATCTCCATTTCGATTACGTAATACGCC
CGGCGATGCATACAGATCCAGACTATTTGGATGGCCACTGCCAGAAAATG
CTCATGGAAAAACTTATCGTGGATTGTTGCTGAAAT
BS17578.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-PA | 1443 | CG31467-RA | 574..1443 | 886..17 | 4350 | 100 | Minus |
CG31391-PA | 1443 | CG31391-RA | 574..800 | 886..660 | 510 | 88.9 | Minus |
CG31391-PA | 1443 | CG31391-RA | 1195..1289 | 265..171 | 300 | 92.6 | Minus |
CG14689-PA | 1464 | CG14689-RA | 895..929 | 559..525 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1694 | CG31467-RA | 703..1574 | 886..15 | 4360 | 100 | Minus |
CG31391-RA | 1704 | CG31391-RA | 660..1453 | 886..93 | 1405 | 78.8 | Minus |
CG14689-RA | 1661 | CG14689-RA | 704..1153 | 859..410 | 480 | 74.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10705290..10706161 | 15..886 | 4360 | 100 | Plus |
3R | 32079331 | 3R | 10703623..10704416 | 93..886 | 1390 | 78.3 | Plus |
3R | 32079331 | 3R | 10710096..10710545 | 410..859 | 450 | 73.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:14:45 has no hits.
BS17578.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:36 Download gff for
BS17578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-PA | 574..1443 | 17..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:06 Download gff for
BS17578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 703..1574 | 15..886 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:04 Download gff for
BS17578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 703..1574 | 15..886 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:04 Download gff for
BS17578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10705290..10706161 | 15..886 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:06 Download gff for
BS17578.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6531012..6531883 | 15..886 | 100 | | Plus |
BS17578.5prime Sequence
885 bp (789 high quality bases) assembled on 2007-05-15
> BS17578.5prime
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCCAGAGCTAAAG
CTGGTTCCTGAAGAGGATTTGCCCATTTTGTGGAT
BS17578.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-PA | 1443 | CG31467-RA | 1..869 | 17..885 | 4295 | 99.7 | Plus |
CG31391-PA | 1443 | CG31391-RA | 542..800 | 558..816 | 670 | 90.3 | Plus |
CG31391-PA | 1443 | CG31391-RA | 13..200 | 29..216 | 565 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:59:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-RA | 1694 | CG31467-RA | 130..998 | 17..885 | 4315 | 99.8 | Plus |
CG31391-RA | 1704 | CG31391-RA | 99..955 | 29..885 | 1780 | 80.8 | Plus |
CG14689-RA | 1661 | CG14689-RA | 109..302 | 16..209 | 400 | 80.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:58:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10705866..10706734 | 885..17 | 4315 | 99.8 | Minus |
3R | 32079331 | 3R | 10704121..10704977 | 885..29 | 1765 | 80.4 | Minus |
3R | 32079331 | 3R | 10710947..10711140 | 209..16 | 400 | 80.4 | Minus |
3R | 32079331 | 3R | 10710429..10710723 | 733..439 | 215 | 71.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 14:58:58 has no hits.
BS17578.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:08 Download gff for
BS17578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-PA | 1..869 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:18 Download gff for
BS17578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..998 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:56 Download gff for
BS17578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31467-RA | 130..998 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:56 Download gff for
BS17578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10705866..10706734 | 17..885 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:18 Download gff for
BS17578.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6531588..6532456 | 17..885 | 99 | | Minus |
BS17578.pep Sequence
Translation from 16 to 1458
> BS17578.pep
MKRIHVDNYAPKYYSGKWSWDSEKDCLHFQAHNDLENARERYIMTNGYRF
LRTIDQEEELIFRQEYVLPKSNYSDVVVVGDIRNLVLYLMPSEFLTYKFV
EFMYERDTHLLLHSLIIYFEHYLRLVEFILIRRDELSGPLGQVQSEQTND
MKRTFSVYLSQYRMLVARNYCRIIGGEDNMSKYYHMKPISNISATIHDKF
FHEHFLAVAIQIVWICMHRRAYYVIEMEINRLFRSEHFVSAHPEYLEFTE
AERSLLYGRNKKNYNYRIQESPLVQELKLVPEEDLPILWIGERKYRGNDI
RIAEIELEYIVPGSQLSFIDVSHGIMGHPKSLYNTLLSLDWPAVRFSNFS
EKFDPYHIIRRPHLQIPKIGELQMRTMKEKYEHFYKLCKVHERVTHHQIC
KWVKRDINIAFFRSGGLLTNVVSRCEKELASTSSGQRVDQIISNYFKIMS
KIRKEDRDPEHASSTRSSIASRFSVGKAKR*
BS17578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31467-PA | 480 | CG31467-PA | 1..480 | 1..480 | 2536 | 100 | Plus |
CG31391-PA | 480 | CG31391-PA | 1..456 | 1..456 | 1944 | 78.5 | Plus |
CG14689-PA | 487 | CG14689-PA | 1..469 | 1..469 | 1685 | 68.2 | Plus |