Clone BS17578 Report

Search the DGRC for BS17578

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:175
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG31467-RA
Protein status:BS17578.pep: full length peptide match
Sequenced Size:1475

Clone Sequence Records

BS17578.complete Sequence

1475 bp assembled on 2009-12-07

GenBank Submission: KX805574

> BS17578.complete
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCAGGAGCTAAAG
CTGGTTCCTGAAGAGGATTTGCCCATTTTGTGGATAGGCGAACGCAAGTA
CAGAGGAAACGATATCCGCATTGCCGAGATTGAGCTGGAGTACATTGTGC
CCGGTTCGCAGCTCAGCTTTATAGATGTATCGCACGGCATCATGGGCCAT
CCCAAGAGCCTCTACAACACGCTTCTTAGTCTCGACTGGCCGGCTGTCCG
CTTCTCAAACTTCTCGGAAAAGTTCGATCCGTACCATATAATCAGGAGAC
CTCACCTGCAAATACCCAAGATAGGTGAGCTTCAGATGCGTACAATGAAA
GAGAAATATGAACATTTCTACAAGCTCTGTAAGGTTCATGAGCGGGTCAC
ACACCATCAGATCTGCAAGTGGGTCAAACGAGACATCAACATAGCCTTCT
TTCGGTCCGGAGGTCTACTCACGAACGTAGTCTCGCGTTGTGAAAAGGAG
TTGGCAAGCACATCTTCAGGACAAAGGGTCGATCAGATCATCTCCAACTA
TTTTAAGATCATGTCCAAAATACGCAAGGAGGATAGAGATCCGGAGCATG
CATCATCTACGCGTAGTAGTATTGCATCGCGATTTAGTGTAGGCAAGGCA
AAGCGGTAAAAGCTTTCTAGACCAT

BS17578.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:45:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1443 CG31467-PA 1..1443 17..1459 7215 100 Plus
CG31391-RA 1443 CG31391-PA 13..1367 29..1383 2380 78.4 Plus
CG14689-RA 1464 CG14689-PA 417..1044 439..1066 470 71.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1694 CG31467-RA 130..1574 17..1461 7225 100 Plus
CG31391-RA 1704 CG31391-RA 99..1453 29..1383 2380 78.4 Plus
CG14689-RA 1661 CG14689-RA 526..1153 439..1066 470 71.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10705290..10706734 1461..17 7225 100 Minus
3R 32079331 3R 10703623..10704977 1383..29 2380 78.4 Minus
3R 32079331 3R 10710096..10710723 1066..439 470 71.7 Minus
3R 32079331 3R 10710947..10711140 209..16 400 80.4 Minus
Blast to na_te.dros performed on 2014-11-28 01:45:03 has no hits.

BS17578.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:28 Download gff for BS17578.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 1..1443 17..1459 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:39:13 Download gff for BS17578.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1570 17..1457 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:56:40 Download gff for BS17578.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1570 17..1457 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:30 Download gff for BS17578.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1574 17..1461 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:58 Download gff for BS17578.complete
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..1570 17..1457 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:58 Download gff for BS17578.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10705294..10706734 17..1457 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:56:40 Download gff for BS17578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6531016..6532456 17..1457 100   Minus

BS17578.3prime Sequence

886 bp (824 high quality bases) assembled on 2007-05-15

> BS17578.3prime
ATGGTCTAGAAAGCTTTTACCGCTTTGCCTTGCCTACACTAAATCGCGAT
GCAATACTACTACGCGTAGATGATGCATGCTCCGGATCTCTATCCTCCTT
GCGTATTTTGGACATGATCTTAAAATAGTTGGAGATGATCTGATCGACCC
TTTGTCCTGAAGATGTGCTTGCCAACTCCTTTTCACAACGCGAGACTACG
TTCGTGAGTAGACCTCCGGACCGAAAGAAGGCTATGTTGATGTCTCGTTT
GACCCACTTGCAGATCTGATGGTGTGTGACCCGCTCATGAACCTTACAGA
GCTTGTAGAAATGTTCATATTTCTCTTTCATTGTACGCATCTGAAGCTCA
CCTATCTTGGGTATTTGCAGGTGAGGTCTCCTGATTATATGGTACGGATC
GAACTTTTCCGAGAAGTTTGAGAAGCGGACAGCCGGCCAGTCGAGACTAA
GAAGCGTGTTGTAGAGGCTCTTGGGATGGCCCATGATGCCGTGCGATACA
TCTATAAAGCTGAGCTGCGAACCGGGCACAATGTACTCCAGCTCAATCTC
GGCAATGCGGATATCGTTTCCTCTGTACTTGCGTTCGCCTATCCACAAAA
TGGGCAAATCCTCTTCAGGAACCAGCTTTAGCTCCTGGACTAGAGGCGAT
TCCTGAATTCGATAATTGTAGTTCTTTTTGTTTCTGCCGTAGAGAAGACT
GCGCTCCGCCTCCGTGAACTCGAGGTATTCTGGGTGGGCGGAAACAAAGT
GCTCGGAGCGGAAAAGGCGATTGATCTCCATTTCGATTACGTAATACGCC
CGGCGATGCATACAGATCCAGACTATTTGGATGGCCACTGCCAGAAAATG
CTCATGGAAAAACTTATCGTGGATTGTTGCTGAAAT

BS17578.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 1443 CG31467-RA 574..1443 886..17 4350 100 Minus
CG31391-PA 1443 CG31391-RA 574..800 886..660 510 88.9 Minus
CG31391-PA 1443 CG31391-RA 1195..1289 265..171 300 92.6 Minus
CG14689-PA 1464 CG14689-RA 895..929 559..525 150 97.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:14:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1694 CG31467-RA 703..1574 886..15 4360 100 Minus
CG31391-RA 1704 CG31391-RA 660..1453 886..93 1405 78.8 Minus
CG14689-RA 1661 CG14689-RA 704..1153 859..410 480 74.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:14:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10705290..10706161 15..886 4360 100 Plus
3R 32079331 3R 10703623..10704416 93..886 1390 78.3 Plus
3R 32079331 3R 10710096..10710545 410..859 450 73.3 Plus
Blast to na_te.dros performed on 2015-02-11 04:14:45 has no hits.

BS17578.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:53:36 Download gff for BS17578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-PA 574..1443 17..886 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:29:06 Download gff for BS17578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 703..1574 15..886 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:40:04 Download gff for BS17578.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 703..1574 15..886 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:40:04 Download gff for BS17578.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10705290..10706161 15..886 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:29:06 Download gff for BS17578.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6531012..6531883 15..886 100   Plus

BS17578.5prime Sequence

885 bp (789 high quality bases) assembled on 2007-05-15

> BS17578.5prime
GAAGTTATCAGTCGACATGAAGCGCATTCATGTGGATAACTACGCCCCAA
AGTACTATAGCGGCAAGTGGTCATGGGACTCGGAGAAAGACTGCCTCCAC
TTTCAGGCGCACAACGATCTGGAAAACGCAAGAGAGCGCTATATTATGAC
CAATGGCTACAGGTTCCTGCGCACAATAGACCAGGAGGAGGAGCTCATCT
TCCGACAGGAGTATGTGCTACCGAAAAGCAACTATAGTGACGTTGTGGTG
GTCGGAGATATTAGAAACTTGGTTCTCTACCTTATGCCTTCAGAATTTCT
AACCTACAAGTTCGTTGAGTTCATGTACGAGCGGGATACGCACTTGTTGC
TTCACTCCCTGATTATATACTTTGAGCACTATTTGCGACTGGTCGAGTTT
ATACTTATACGTCGGGATGAGCTTTCCGGTCCCCTGGGTCAGGTGCAGAG
CGAGCAGACCAACGATATGAAACGAACCTTTTCGGTATACTTAAGCCAGT
ATCGTATGCTTGTTGCACGAAACTACTGCCGCATCATCGGGGGCGAGGAT
AATATGTCCAAGTACTACCACATGAAGCCGATTTCCAACATTTCAGCAAC
AATCCACGATAAGTTTTTCCATGAGCATTTTCTGGCAGTGGCCATCCAAA
TAGTCTGGATCTGTATGCATCGCCGGGCGTATTACGTAATCGAAATGGAG
ATCAATCGCCTTTTCCGCTCCGAGCACTTTGTTTCCGCCCACCCAGAATA
CCTCGAGTTCACGGAGGCGGAGCGCAGTCTTCTCTACGGCAGAAACAAAA
AGAACTACAATTATCGAATTCAGGAATCGCCTCTAGTCCCAGAGCTAAAG
CTGGTTCCTGAAGAGGATTTGCCCATTTTGTGGAT

BS17578.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 1443 CG31467-RA 1..869 17..885 4295 99.7 Plus
CG31391-PA 1443 CG31391-RA 542..800 558..816 670 90.3 Plus
CG31391-PA 1443 CG31391-RA 13..200 29..216 565 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:59:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-RA 1694 CG31467-RA 130..998 17..885 4315 99.8 Plus
CG31391-RA 1704 CG31391-RA 99..955 29..885 1780 80.8 Plus
CG14689-RA 1661 CG14689-RA 109..302 16..209 400 80.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:58:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10705866..10706734 885..17 4315 99.8 Minus
3R 32079331 3R 10704121..10704977 885..29 1765 80.4 Minus
3R 32079331 3R 10710947..10711140 209..16 400 80.4 Minus
3R 32079331 3R 10710429..10710723 733..439 215 71.5 Minus
Blast to na_te.dros performed on 2015-02-10 14:58:58 has no hits.

BS17578.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:47:08 Download gff for BS17578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-PA 1..869 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 06:19:18 Download gff for BS17578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..998 17..885 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:56 Download gff for BS17578.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31467-RA 130..998 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:56 Download gff for BS17578.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10705866..10706734 17..885 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 06:19:18 Download gff for BS17578.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6531588..6532456 17..885 99   Minus

BS17578.pep Sequence

Translation from 16 to 1458

> BS17578.pep
MKRIHVDNYAPKYYSGKWSWDSEKDCLHFQAHNDLENARERYIMTNGYRF
LRTIDQEEELIFRQEYVLPKSNYSDVVVVGDIRNLVLYLMPSEFLTYKFV
EFMYERDTHLLLHSLIIYFEHYLRLVEFILIRRDELSGPLGQVQSEQTND
MKRTFSVYLSQYRMLVARNYCRIIGGEDNMSKYYHMKPISNISATIHDKF
FHEHFLAVAIQIVWICMHRRAYYVIEMEINRLFRSEHFVSAHPEYLEFTE
AERSLLYGRNKKNYNYRIQESPLVQELKLVPEEDLPILWIGERKYRGNDI
RIAEIELEYIVPGSQLSFIDVSHGIMGHPKSLYNTLLSLDWPAVRFSNFS
EKFDPYHIIRRPHLQIPKIGELQMRTMKEKYEHFYKLCKVHERVTHHQIC
KWVKRDINIAFFRSGGLLTNVVSRCEKELASTSSGQRVDQIISNYFKIMS
KIRKEDRDPEHASSTRSSIASRFSVGKAKR*

BS17578.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:59:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31467-PA 480 CG31467-PA 1..480 1..480 2536 100 Plus
CG31391-PA 480 CG31391-PA 1..456 1..456 1944 78.5 Plus
CG14689-PA 487 CG14689-PA 1..469 1..469 1685 68.2 Plus