Clone Sequence Records
BS17580.complete Sequence
1073 bp assembled on 2010-02-09
GenBank Submission: KX803101
> BS17580.complete
GAAGTTATCAGTCGACATGAGTACCGCTAATCATTTTCAAAGAATTCTTG
AGAAATTGTCAATCTCTGACAATGAAAGGGCCGTATATACCAAGGAAGCC
GAGGAAATTCAAAACTATGTAGTTGACGAACTTAAGCGGGTAGACAAAAC
CTTTCGCCAGGTATTCGACGGACTCAGTCTTGGAGGAAGTTACTTGGATC
GCGTCAAGCTAAATTTGCCCGATGAATTTGATCTGCACATGAAACTAAAG
TTTCCATTTGATATCCGACCGACTCGGATCGACCAAGGGTTTATTTATTT
AGAGGCTGATCTCACCGTAATCAATCCCCAACGCATCCATCGTATTGTAC
TTCAAGACTGGCTACGCAATGCATTCCGCAAGGTATTCAGGTCTAATCAG
ACAATTGCCACTACCAGTAATCGAGTCTACAAATTAACCTATACTCTTGA
GGGGTATGGTTGTGCCCATACCATTTTAGCCGTTTGTGGTAGTCGCTCGA
TATCTTTTGATTTGGTACCAGCATTCGAATTCTCTGGAAGCCAATGGCCG
TTTGATATTTGCCCGGTTCCTGCTGATGTTAGCAATAATTGGCCATGGTT
CGCCATTCCGCAACAGAAGAAGAAGTCGGCTAAACCGAGAACCACATTCA
TGGTTTGTGCACCACATTGGGAGCGCGAAATTATGAAGGGCAAGGATAAT
TTGAAGAACGTTCTACGGCTGATGAAAGGATTGCGGGATGCCCACGCCAG
GAAATTGCCTCACTTGTCCAGCTACATGTTGAAAACAGTTTTGCTTCATC
GCCTCGAAAGTGCTGACTGGGAAAGAGACCTGGGCACCCTATTGGTTGAG
ATGTGGAGTCATTTGGTGGATCATCTACGCGCTCGTAGACTGGAGTTCTT
TTTGGCTAAGGATCATAATGTATTCAATCGTATGAATCAAAATGAAATCA
AGATATGTCTAGAAAACGCAAGCACTCTGCTAAGAAAGCTTTGTATTGCT
CAGACATGCGGTGGTAGCTACCATCATGTGGCCCAACTATTCAATATTCC
AAATTAAAAGCTTTCTAGACCAT
BS17580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1041 | CG7194-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 70..1110 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302619..8303492 | 1057..184 | 4370 | 100 | Minus |
| 3L | 28110227 | 3L | 8303821..8303990 | 186..17 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:41 has no hits.
BS17580.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:27:32 Download gff for
BS17580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 18:15:35 Download gff for
BS17580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1108 | 17..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:29 Download gff for
BS17580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1108 | 17..1055 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:27:33 Download gff for
BS17580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 46..1096 | 17..1067 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:50 Download gff for
BS17580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..1108 | 17..1055 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:50 Download gff for
BS17580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8302621..8303490 | 186..1055 | 100 | <- | Minus |
| 3L | 8303822..8303990 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:29 Download gff for
BS17580.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8295721..8296590 | 186..1055 | 100 | <- | Minus |
| arm_3L | 8296922..8297090 | 17..185 | 100 | | Minus |
BS17580.3prime Sequence
854 bp (842 high quality bases) assembled on 2007-05-15
> BS17580.3prime
ATGGTCTAGAAAGCTTTTAATTTGGAATATTGAATAGTTGGGCCACATGA
TGGTAGCTACCACCGCATGTCTGAGCAATACAAAGCTTTCTTAGCAGAGT
GCTTGCGTTTTCTAGACATATCTTGATTTCATTTTGATTCATACGATTGA
ATACATTATGATCCTTAGCCAAAAAGAACTCCAGTCTACGAGCGCGTAGA
TGATCCACCAAATGACTCCACATCTCAACCAATAGGGTGCCCAGGTCTCT
TTCCCAGTCAGCACTTTCGAGGCGATGAAGCAAAACTGTTTTCAACATGT
AGCTGGACAAGTGAGGCAATTTCCTGGCGTGGGCATCCCGCAATCCTTTC
ATCAGCCGTAGAACGTTCTTCAAATTATCCTTGCCCTTCATAATTTCGCG
CTCCCAATGTGGTGCACAAACCATGAATGTGGTTCTCGGTTTAGCCGACT
TCTTCTTCTGTTGCGGAATGGCGAACCATGGCCAATTATTGCTAACATCA
GCAGGAACCGGGCAAATATCAAACGGCCATTGGCTTCCAGAGAATTCGAA
TGCTGGTACCAAATCAAAAGATATCGAGCGACTACCACAAACGGCTAAAA
TGGTATGGGCACAACCATACCCCTCAAGAGTATAGGTTAATTTGTAGACT
CGATTACTGGTAGTGGCAATTGTCTGATTAGACCTGAATACCTTGCGGAA
TGCATTGCGTAGCCAGTCTTGAAGTACAATACGATGGATGCGTTGGGGAT
TGATTACGGTGAGATCAGCCTCTAAATAAATAAACCCTTGGTCGATCCGA
GTCGGTCGGATATCAAATGGAAACTTTAGTTTCATGTGCAGATCAAATTC
ATCG
BS17580.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-PA | 1041 | CG7194-RA | 204..1041 | 854..17 | 4190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 273..1110 | 854..17 | 4190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:54:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302619..8303456 | 17..854 | 4190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:54:39 has no hits.
BS17580.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:50:06 Download gff for
BS17580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-PA | 204..1041 | 17..854 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:51:56 Download gff for
BS17580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 273..1120 | 7..854 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:23:30 Download gff for
BS17580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 273..1120 | 7..854 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:23:30 Download gff for
BS17580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8302609..8303456 | 7..854 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:51:56 Download gff for
BS17580.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8295709..8296556 | 7..854 | 99 | | Plus |
BS17580.5prime Sequence
831 bp (803 high quality bases) assembled on 2007-05-15
> BS17580.5prime
GAAGTTATCAGTCGACATGAGTACCGCTAATCATTTTCAAAGAATTCTTG
AGAAATTGTCAATCTCTGACAATGAAAGGGCCGTATATACCAAGGAAGCC
GAGGAAATTCAAAACTATGTAGTTGACGAACTTAAGCGGGTAGACAAAAC
CTTTCGCCAGGTATTCGACGGACTCAGTCTTGGAGGAAGTTACTTGGATC
GCGTCAAGCTAAATTTGCCCGATGAATTTGATCTGCACATGAAACTAAAG
TTTCCATTTGATATCCGACCGACTCGGATCGACCAAGGGTTTATTTATTT
AGAGGCTGATCTCACCGTAATCAATCCCCAACGCATCCATCGTATTGTAC
TTCAAGACTGGCTACGCAATGCATTCCGCAAGGTATTCAGGTCTAATCAG
ACAATTGCCACTACCAGTAATCGAGTCTACAAATTAACCTATACTCTTGA
GGGGTATGGTTGTGCCCATACCATTTTAGCCGTTTGTGGTAGTCGCTCGA
TATCTTTTGATTTGGTACCAGCATTCGAATTCTCTGGAAGCCAATGGCCG
TTTGATATTTGCCCGGTTCCTGCTGATGTTAGCAATAATTGGCCATGGTT
CGCCATTCCGCAACAGAAGAAGAAGTCGGCTAAACCGAGAACCACATTCA
TGGTTTGTGCACCACATTGGGAGCGCGAAATTATGAAGGGCAAGGATAAT
TTGAAGAACGTTCTACGGCTGATGAAAGGATTGCGGGATGCCCACGCCAG
GAAATTGCCTCACTTGTCCAGCTACATGTTGAAAACAGTTTTGCTTCATC
GCCTCGAAAGTGCTGACTGGGAAAGAGACCT
BS17580.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-PA | 1041 | CG7194-RA | 1..815 | 17..831 | 4075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 23:39:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-RA | 1365 | CG7194-RA | 70..884 | 17..831 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 23:39:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8302845..8303492 | 831..184 | 3240 | 100 | Minus |
| 3L | 28110227 | 3L | 8303821..8303990 | 186..17 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 23:39:35 has no hits.
BS17580.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 18:44:03 Download gff for
BS17580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-PA | 1..815 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 21:49:24 Download gff for
BS17580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..884 | 17..831 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:50 Download gff for
BS17580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7194-RA | 70..884 | 17..831 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:50 Download gff for
BS17580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8302845..8303490 | 186..831 | 100 | <- | Minus |
| 3L | 8303822..8303990 | 17..185 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 21:49:24 Download gff for
BS17580.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8295945..8296590 | 186..831 | 100 | <- | Minus |
| arm_3L | 8296922..8297090 | 17..185 | 100 | | Minus |
BS17580.pep Sequence
Translation from 16 to 1056
> BS17580.pep
MSTANHFQRILEKLSISDNERAVYTKEAEEIQNYVVDELKRVDKTFRQVF
DGLSLGGSYLDRVKLNLPDEFDLHMKLKFPFDIRPTRIDQGFIYLEADLT
VINPQRIHRIVLQDWLRNAFRKVFRSNQTIATTSNRVYKLTYTLEGYGCA
HTILAVCGSRSISFDLVPAFEFSGSQWPFDICPVPADVSNNWPWFAIPQQ
KKKSAKPRTTFMVCAPHWEREIMKGKDNLKNVLRLMKGLRDAHARKLPHL
SSYMLKTVLLHRLESADWERDLGTLLVEMWSHLVDHLRARRLEFFLAKDH
NVFNRMNQNEIKICLENASTLLRKLCIAQTCGGSYHHVAQLFNIPN*
BS17580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7194-PA | 346 | CG7194-PA | 1..346 | 1..346 | 1835 | 100 | Plus |
| CG12970-PC | 378 | CG12970-PC | 23..336 | 21..310 | 191 | 26.7 | Plus |
